Nsyl002801.1
Basic Information
- Insect
- Napeogenes sylphis
- Gene Symbol
- -
- Assembly
- GCA_959347405.1
- Location
- OY365776.1:36667067-36672549[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 3.5 5.2e+02 2.8 2.0 2 21 490 509 489 513 0.88 2 11 0.0069 1 11.3 10.0 1 23 527 550 527 551 0.96 3 11 0.13 19 7.3 0.3 1 22 555 576 555 579 0.90 4 11 0.00098 0.15 14.0 0.1 2 22 630 650 629 650 0.95 5 11 2e-05 0.003 19.3 0.9 1 23 706 727 706 727 0.98 6 11 7.8e-07 0.00012 23.7 0.4 1 23 733 756 733 756 0.97 7 11 0.051 7.6 8.6 0.3 2 19 788 805 787 808 0.91 8 11 0.2 30 6.7 1.0 2 23 815 838 815 838 0.95 9 11 0.47 69 5.5 7.8 1 20 845 864 845 867 0.96 10 11 0.012 1.7 10.6 1.2 1 19 873 891 873 894 0.95 11 11 3.2 4.7e+02 2.9 0.0 6 23 911 929 904 929 0.84
Sequence Information
- Coding Sequence
- ATGCTCTCGCCTCACGAAGACGACGATGACAGCCATCTATGCATTAAATGCAATGCAACTATTATCGGCCTCGACAACTATGTTAAACACAGAAAACAAGTTTGTCGTAAAAGAAAAATTGATTCCAAACCAGATTCCGTTTCTATTGATCCAATAGATGCAAATTACAGCCTCGGTGCTGATGTATTCTTCCAATCTTTGGAACTTCAAAGCAGCGTAAAAAGATCACCTTTGTCACGATTGACGCCACCTACACCAGTCACTAAAACCTGcgttgaaaaaaaaagtgtattgaATGTTGCATCTTCATCTAGAGAAATACCGAGAATAAGCCCTATTGAAAGTAATTTGAGGGGTGAAGATTGGATTGGTGGTCACAGTTTAAGGATAGGAAGCAATGAAGATAATCagactaaattaattaatgctgTTGCTAATATAAGTGGATCCGTGAAGAAAGAAACCAGCAATAACTCTTACAATATATGTGATTTTAATGTCTACAAAGAAGAAAATTCAGAAGAATCAAATGTTTCGGAAGACGAAGACGAAGAAGAAATAGTTGTTGATGAAGAGTCATGGACCCTACCACCGAACTATACTGGAGGAAAATGGCGACCTGCTTCTCCGGAACAGGAATGGGATGCAAGAGAAGAACAGGAACAGGTCGATcgtgactatgactatgacgcCCCACCACCGGAACATACCAAGGGTAAATGGGTTCCAGGTGCTAATGAACGAACTCAAATCATGCAAACTACCATTCAATCGAAAGGATCTGTCCAATATTGGTGTGGTCCTTGTAACCGGCGGTTAGGCTCTAGAGCTATCTacgaaaaacatttaaaatctaatttacACATGCGAAAAGTACAACCAGAACATGAATTAGAGTTTTCAGGAAGTTTGGTACCTACTACTAATTCTCCCTCAAAGCCAAGGTCAGCTAGGGCTTCTATGTTTGTAAGCGCTGTATATTCACCACCTCCTAGAAAGAGAGCGAAAAGAGAACCAAAACTTAGcgtcaaaattaataaaaagaaaagaaaaagaactTCCTGCTTTATTCAATGCTCGGGTTGCAAGACCCGAGTTAAAAAGCATTTAATGGGCAAACATTTAATATCCCACTATCATTTTAGGAAAGGATCTGTTATAAAGAATTATTCTTACCAACAGTTAGTTCTCAGTAACATGGACGCTATTGTACACCAAGCACCATTTCAGTGCAGTCCATGCAAGTTTTATACAAACTGGCTCTCAAATTTCATGCAACACTGGATATCAGAAGAACACAATAATACAACATCATCAATGGATGGTAAATATTGGTGTTCTTTTTGTAAATTTGATTGTGAAACAACTGAAGAAATGTTTACCCACATGTCAAGTATTGAACACAGAGAAGTCGTGGCTGCTATAAATAGATCAATGCCAATTATAATACGTAAGAAGACCATAGTGAAATGTAAAACCTGTCTCGTAATTTTCCGTTACAATGCAGAAGTAAAGAACCATTGCCGTAAGACAGGACACGAACTTCCTTACACAGCTACCAATATGCATCAAGAGCTTCATAGATGTCATCACTGCAAAAAACAGTTTAAGTTCTCTGTATCTTTGGCAGCTCATCTTAAATCCAGACATCATGATAAAGCATATTTCTGTCTCGTATGTTCAATAATGTTTGATTCTAACGAAGAAGTCAAGTTGCATCGACAATCTATGGAGCATAGGGTAAAACGTATCGAAATTTTGCAAGAACGTGGAATACTTACTAAAAAGATTACAAAGAGGTGTCCATATTGCCCgcagtatataatattaaagaatattttagaacTTAGAGATCATATACAAAAAGTTCATCCGAGTGTAAagaaaaaatGTCCGAAATGTGGAGAGGCATTCATTTTCTCCCAAGAAGTATCAAGACACATTCGTTCCAATGCTTGTAAGTTAGAAAAGCTCGAAGAAGCTCCGTCACCCATAAAGTGGAACTGCAGTCAGTGCCTATTCTCCACCGATTCTCAAGCAGAATGCTTTTTTCACGAAGTTCTCCATTCTGATCCGATCAGTGACACTACTAAAACAAAAAGAGTAGTTAAGAAATACAAATGCCCTCTCTGCCCGAAAACCTTTACCAAGCCATCTTTAAGATTGCATCTGAGGCAACACACTTTTGAAAGACCTTTTATTTGTACAATTTGTGGAGCAAACTTCACCCGTCAGTCTAGTTTGGCGAATCACACTAGGACAGAGCACAATGAAGTCCCGGAGCCCCCGCTCGACAATCACCCGGAGACTTCCCTTTTGACCTCGCCAGGAGACACCGATGCAGCACCTGATCGCATCCTACAGTGCCAAAAGTGTAACAAAAAATTTGGAAAAAGGCTGGCGCTGTCGCAGCATGCGGTGACGTGCGCGGGCGTGGAGCGCCGCTGCCCGCACACGGGGTGCTCCTATATCGCGTCCAGCGTCACTCAGCTCACCAGGCACCGTCGCGGACATGGGGAAATTGTAAAACAATACGAATGTCCGCATTGTCAATTTAAAACTGATAAATCTAGTCATATGAAGAGGCACTTATTTTGTCACGAGGGTATTAAGCCTTACGCCTGCCCTCATTGCAGTTTTACTTGTGGTAGTTTGGAAAACCTCCGTAAGCACGCAGTCCGCAGCGCACAACACCGCGGGTTGCCGCTATACTCGTGCCGCGCCGCACCCTGTGCCTTCACCACCGACCGCGCCGCTGAGCTGCGCCGCCACCTTGCCATCGATCACGCTGACCTTTACGACGCACGTGCAGCACTGCGAGCCGTACAGACGCACCTCATGACCGTAGACCTGAAATAG
- Protein Sequence
- MLSPHEDDDDSHLCIKCNATIIGLDNYVKHRKQVCRKRKIDSKPDSVSIDPIDANYSLGADVFFQSLELQSSVKRSPLSRLTPPTPVTKTCVEKKSVLNVASSSREIPRISPIESNLRGEDWIGGHSLRIGSNEDNQTKLINAVANISGSVKKETSNNSYNICDFNVYKEENSEESNVSEDEDEEEIVVDEESWTLPPNYTGGKWRPASPEQEWDAREEQEQVDRDYDYDAPPPEHTKGKWVPGANERTQIMQTTIQSKGSVQYWCGPCNRRLGSRAIYEKHLKSNLHMRKVQPEHELEFSGSLVPTTNSPSKPRSARASMFVSAVYSPPPRKRAKREPKLSVKINKKKRKRTSCFIQCSGCKTRVKKHLMGKHLISHYHFRKGSVIKNYSYQQLVLSNMDAIVHQAPFQCSPCKFYTNWLSNFMQHWISEEHNNTTSSMDGKYWCSFCKFDCETTEEMFTHMSSIEHREVVAAINRSMPIIIRKKTIVKCKTCLVIFRYNAEVKNHCRKTGHELPYTATNMHQELHRCHHCKKQFKFSVSLAAHLKSRHHDKAYFCLVCSIMFDSNEEVKLHRQSMEHRVKRIEILQERGILTKKITKRCPYCPQYIILKNILELRDHIQKVHPSVKKKCPKCGEAFIFSQEVSRHIRSNACKLEKLEEAPSPIKWNCSQCLFSTDSQAECFFHEVLHSDPISDTTKTKRVVKKYKCPLCPKTFTKPSLRLHLRQHTFERPFICTICGANFTRQSSLANHTRTEHNEVPEPPLDNHPETSLLTSPGDTDAAPDRILQCQKCNKKFGKRLALSQHAVTCAGVERRCPHTGCSYIASSVTQLTRHRRGHGEIVKQYECPHCQFKTDKSSHMKRHLFCHEGIKPYACPHCSFTCGSLENLRKHAVRSAQHRGLPLYSCRAAPCAFTTDRAAELRRHLAIDHADLYDARAALRAVQTHLMTVDLK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01034137;
- 90% Identity
- iTF_00461931;
- 80% Identity
- -