Nsyl038759.1
Basic Information
- Insect
- Napeogenes sylphis
- Gene Symbol
- X-element\ORF2
- Assembly
- GCA_959347405.1
- Location
- OY365788.1:3329493-3341513[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00048 0.072 14.9 0.7 1 23 1014 1037 1014 1037 0.94 2 10 1.5 2.3e+02 3.9 0.4 2 23 1061 1083 1060 1083 0.94 3 10 0.058 8.6 8.4 0.2 2 23 1106 1128 1105 1128 0.94 4 10 0.00011 0.017 16.9 2.7 1 23 1132 1154 1132 1154 0.97 5 10 1.4 2.1e+02 4.1 0.4 1 22 1159 1180 1159 1182 0.73 6 10 3.6 5.3e+02 2.8 0.4 2 19 1190 1207 1190 1212 0.77 7 10 0.003 0.44 12.5 1.1 1 23 1219 1242 1219 1242 0.96 8 10 0.0021 0.31 12.9 0.5 1 23 1248 1270 1248 1270 0.98 9 10 1.2e-05 0.0018 20.0 2.1 1 23 1276 1298 1276 1298 0.98 10 10 0.00025 0.037 15.9 2.4 1 23 1304 1327 1304 1327 0.97
Sequence Information
- Coding Sequence
- atggcCCCAATAAACTTTCTTCAGTGGAACTGTACTAGTATTCGATCTAAAAAACATGAACTGTTTTCTCTTATTAATTTACACAATCCTGTCGTCATTGCTGCTTCTGAAACATGGTTAGTGCCAGGGTCCCGTTTTCGTGTCCCTGGTTTCTCCTGCTTGAGGGATGACAGAGATAATGGTTATGGTGGTTGTGCCATTTTTATTCGTAACTCCTCTCTCTTTTCACAAATTCCCCTTCCTTCTTTTAGTCCCGTCATTAATGTTGTTGCTGTTAGAGCTTTTGATATTTCTATTCTATCTCTTTATGTTCCCCATCCTTCTGCTTCTCTTATACCGTCTCTTCGGTCTATTTTTTCCCATCTGCCCCATCCGATACTAGTCTTGGGAGATTTTAACTCTCACCATTTGTTATGGGGATCTCATTTTTGTGATAGATTTGGAATTCTTCTAGTAGAAATGTTTGAGGATGTAGATATTTGCATCCTTAATGATGGATCTTCTACTCGGAGAGTGTATCCAGGTCAGAACCCTAAATCTGCTGTTGACCTTTCTTTAGCTTCTCTCTCCTTATCTTCTAAATTTTCTTGGAGAGTTCTTTCCTCTTCTTTTAGTAGTGATCACTTCCCTATTCTTCTTTCCTTAAATGACAGGCTCTTCACAAATTCTATTCCAAGTTctcttttgaaatataaactgGGACTTGTGGACTGGTCTGCTTATGCTGAATCTGTTGACATCTTGTTGGATTCCGTTTCTGATCTTAGCATCAATAGCGATCCTGTTTTGTGTTACAATCAGTTTCTTAATACTTTGATTTCTTCAGCTGACTCGCACTTCCCCATTAAAATTCATCCTAAATATTTTCGACTTTCTCCTCCCTGGTGGGATGAAGAATGCACTTTTTTGGCAAAAACAAGAAAGTTAGCAGAGAAATCTTACTCTCTTCATATGACTttggataattttattaaatatcaacaaCTAAATGCCAAATTTAAGCGTCttgtattaaaaaagaaaaaaagaagttGGATTTTATTCTGTGAATCGCTCAGTCCTCGATCCCCCTCTTCTGTGGTTTGGTTAAACCTTAAAAGATTTCGTCGAGCCCTAATTTCAAATAATCTTAATGCGAATGATCCATCAATATGGCTCAATGATTTTTTTGACAGACTTGCCCCGCCATATGTTCCTTTCCAAGATAATTTCCTGACTCCGCCGTCTTTTCAGACGATCGATGAGATGGACGTTCCCTTTTCCTTTTCTGAGCTTCATTGTGCTCTCTCTGGCCTTAAAGACTCGTCTCCAGGTGAAGATGGTATCCCttactcttttattttaaatataagtgatAAAGCAAAACAATTCTTCCTTAACATCATAAATTCATTCTTCCTCCTCGGTATTGTTCCAGAATCATGGAAATCTCAAATAGTTTTACCAATTTTAAAACCTGATAAAAACCCTATTGAATCGACCTCTTACCGCCCTATTGCATTGTCCTCTACTCTTGCCAAAATTACTGAGCATTTGTTAAAGAACCGACTGGAATGGATAGTGGAAAGCAGAAAAATCCTCTCTTCTTATCAATTTGGCTTTCGAAAAGGTTTGAGTTCCATGGATAGTCTTAGCATTCTGTCGACAGACGTTCGATTAGCTTTTAATAAAGGAGAGTATCTTGTGGGTGTTTTCCTTGATATAGCTTCTGCCTATAACAATGTTGTTCTTCCGTTACTCAGACGTAAAATGCAACAGCTGAGTATACCTCCGTTGTTGACCCATTTCATATGCAATCTACTCTTTTGCAGATCTATTAAAGTCAAATATCTTAATAGTATTCTTCCCCCTAGGACGGTTTGGAAAGGTCTTCCTCAAGGCTCTGTTCTCAGCCCTCTTCTTTACAGCATTTATACTTATAATCTTGATTTATCCGTAAACaacttttgtaaaattttacagtACGCTGatgatatagttatatattatagttcttCGTCTATTGACGATATATCTTTCGGCATTAATTCTGCTCTACATTACCTCGATCAGTGGCTTTCAGATCATGGCCTGTCCTTATCAGTAGGTAAGAGTCAGGCTATAATTTTTACTAAGAAAAGAATCATTCCTTCTTTAGAGTTAGTCTGTGGTAATCAACACATTGCTCTTGTTGACAAGGTGAAATTTCTTGGGATTTATCTAGACAAACGACTTAACGGGATTGCTCATGCTGAATTTATTAGTGAAAAATGTGAAAAAGGTATTAACGTTCTTCGTGCCGTCTCTGGTGTTTGGTGGGGATCTCACCCTTATTCTCTTAAGTTACTTTACAACGCGATTATTCGAAGTCATATAGATTATGGTCTTTTTGTTTTGGAACCTCTTAATAAATCGGCTGCCGAAAAACTCAACAAAATTCAACATCGGTGTCTCCGAATCATTTTAGGAGCAATGAAATCCTCCCCAATTAATGCTCTACAAGAGGAAGATGGGTTAAAAGATATGTGGAAAGATCATTATAGTGAGGGAGAACTGGAAATATACGGGGATATGATAAGGGATTGTTTTGTAATGCCaTGGTATTCTCCATCAATCAATAAATCGGAGTATATTTGTGAATCATGTATAATAAGGTTGAGAGTTGCAGTCAGTTTTAAGAAAGAGATGCTGTTATCAGATAACACTCTAAAAGAGTATTTTGATGAGGGTagAATAAGAGCAACCACAAAATCAAGGGACGGACTGGAACAGTTACTATCATTGAAATGGAAGTGGGCGGGCCACATAGCCCGTCTGAAAGACTACAAGTGGACCAGAACAGTGACCGAATGGAAAGGCCCACAAGGGACACGTAGAATAGGAAGGCCCTGTGCTAGATGGGTCGACGAGATCATAAAAACGGCCAGATCAGTGTTAGGATGTCCACCTAGAAAAGGCGGTCGACAGAGAGACCCGGTATTGATAAAGAGTCAAGAaaatttagatataataatagaaaacacAAACCTCACACCATTTGCCAATTGTGATATTCGCGGATTTGAATGCTGCTTCTGCCCTCAGACATTTCCACAGCCTTGGAACCTTAAAATCCATACATTGGAGGAACACGCCGGCAAGGAATTGTATAAGATATATTGCGCTCCCGCTAAGAGTATTAAAGTTGATGTCACTGACCTCAAGTGTAGAATTTGTGAGGAAAATATATCAACCTTTGATGATGTCTTCGAACATTTGAAACAGAAACACGATAAGAAGTTTCACAATGACGCCTACAAAAACCTAGTACCTTTCAAGTTCGAGGATGATATCCTCAGATGCTACGTTTGTGAAGAAGAGTTTATTAGTTTCCAACTCCTTAATAATCACGTTAATttgaatcattttaaaaattttgaatgtGATAAATGTGGTCGTGGTTTTATTAACAAGAGGACTCTTCAAGTACATAAACATAGACACAAAGTTGGCATATTTGAATGTACATATTGTGTAAAAGTGTTCTGGACTAGAGTTCGTCAACTGGAACATGAGAGGTCTGTCCATAAACTAAATAGCAAGCGTAATCGGTGCGCATTTTGTGGAATGAGATTCTCTGATATGGCAAGAAAAAAAGACCACGAAGTCAGGGTTCACAATGCTCCGAAACAAACATTTGATTGTCAATTTTGTAGCAAAGCATACGATAGTCAAAGATCATTGCAGTATCATGTCAAAAGCGTCCACTTGATGCTTCGTCCCTTCAAATGCGAGGAGTGCGCTGCCGGGTTTTTTAAACGCGTAGATTTAAGGAAGCACATGGTGAAGCATTCAGGAATCAAGCAGTTTACGTGCAGTGTGTGTTTTAAATCCTACGGGAGGAAGTATACTTTACGTGAACACATGCGTATTCACGAAAACGACCGTCGGTTCAAATGCGACCAATGCGGTCAGACGTTCGTTCAAAAATGTACCTGGCAGGGTCACATGCGAgccaaacataataaaaaatga
- Protein Sequence
- MAPINFLQWNCTSIRSKKHELFSLINLHNPVVIAASETWLVPGSRFRVPGFSCLRDDRDNGYGGCAIFIRNSSLFSQIPLPSFSPVINVVAVRAFDISILSLYVPHPSASLIPSLRSIFSHLPHPILVLGDFNSHHLLWGSHFCDRFGILLVEMFEDVDICILNDGSSTRRVYPGQNPKSAVDLSLASLSLSSKFSWRVLSSSFSSDHFPILLSLNDRLFTNSIPSSLLKYKLGLVDWSAYAESVDILLDSVSDLSINSDPVLCYNQFLNTLISSADSHFPIKIHPKYFRLSPPWWDEECTFLAKTRKLAEKSYSLHMTLDNFIKYQQLNAKFKRLVLKKKKRSWILFCESLSPRSPSSVVWLNLKRFRRALISNNLNANDPSIWLNDFFDRLAPPYVPFQDNFLTPPSFQTIDEMDVPFSFSELHCALSGLKDSSPGEDGIPYSFILNISDKAKQFFLNIINSFFLLGIVPESWKSQIVLPILKPDKNPIESTSYRPIALSSTLAKITEHLLKNRLEWIVESRKILSSYQFGFRKGLSSMDSLSILSTDVRLAFNKGEYLVGVFLDIASAYNNVVLPLLRRKMQQLSIPPLLTHFICNLLFCRSIKVKYLNSILPPRTVWKGLPQGSVLSPLLYSIYTYNLDLSVNNFCKILQYADDIVIYYSSSSIDDISFGINSALHYLDQWLSDHGLSLSVGKSQAIIFTKKRIIPSLELVCGNQHIALVDKVKFLGIYLDKRLNGIAHAEFISEKCEKGINVLRAVSGVWWGSHPYSLKLLYNAIIRSHIDYGLFVLEPLNKSAAEKLNKIQHRCLRIILGAMKSSPINALQEEDGLKDMWKDHYSEGELEIYGDMIRDCFVMPWYSPSINKSEYICESCIIRLRVAVSFKKEMLLSDNTLKEYFDEGRIRATTKSRDGLEQLLSLKWKWAGHIARLKDYKWTRTVTEWKGPQGTRRIGRPCARWVDEIIKTARSVLGCPPRKGGRQRDPVLIKSQENLDIIIENTNLTPFANCDIRGFECCFCPQTFPQPWNLKIHTLEEHAGKELYKIYCAPAKSIKVDVTDLKCRICEENISTFDDVFEHLKQKHDKKFHNDAYKNLVPFKFEDDILRCYVCEEEFISFQLLNNHVNLNHFKNFECDKCGRGFINKRTLQVHKHRHKVGIFECTYCVKVFWTRVRQLEHERSVHKLNSKRNRCAFCGMRFSDMARKKDHEVRVHNAPKQTFDCQFCSKAYDSQRSLQYHVKSVHLMLRPFKCEECAAGFFKRVDLRKHMVKHSGIKQFTCSVCFKSYGRKYTLREHMRIHENDRRFKCDQCGQTFVQKCTWQGHMRAKHNKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -