Basic Information

Insect: Napeogenes sylphis
Gene Symbol: -
Assembly: GCA_959347405.1
Location: OY365785.1:25162237-25168606[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 4.3e-05 0.0064 18.2 2.4 1 23 246 268 246 268 0.98

2 13 1.2 1.9e+02 4.2 5.1 1 23 276 299 276 299 0.92

3 13 0.36 53 5.9 0.8 1 23 303 326 303 326 0.93

4 13 0.00051 0.075 14.9 2.6 1 23 403 425 403 425 0.99

5 13 0.078 12 8.0 5.3 1 23 433 456 433 456 0.98

6 13 0.29 43 6.2 2.2 1 23 460 482 460 482 0.97

7 13 0.0001 0.016 17.0 3.4 1 23 487 510 487 510 0.98

8 13 0.074 11 8.1 1.2 1 23 514 537 514 537 0.89

9 13 0.086 13 7.9 0.2 2 19 555 572 554 575 0.92

10 13 1.3 1.9e+02 4.1 0.9 3 23 619 640 617 640 0.95

11 13 2.4e-06 0.00036 22.2 1.2 1 23 649 671 649 671 0.98

12 13 0.0021 0.32 12.9 1.7 1 23 677 699 677 699 0.96

13 13 4.6e-06 0.00069 21.3 2.6 1 23 705 728 705 728 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	4.3e-05	0.0064	18.2	2.4	1	23	246	268	246	268	0.98
2	13	1.2	1.9e+02	4.2	5.1	1	23	276	299	276	299	0.92
3	13	0.36	53	5.9	0.8	1	23	303	326	303	326	0.93
4	13	0.00051	0.075	14.9	2.6	1	23	403	425	403	425	0.99
5	13	0.078	12	8.0	5.3	1	23	433	456	433	456	0.98
6	13	0.29	43	6.2	2.2	1	23	460	482	460	482	0.97
7	13	0.0001	0.016	17.0	3.4	1	23	487	510	487	510	0.98
8	13	0.074	11	8.1	1.2	1	23	514	537	514	537	0.89
9	13	0.086	13	7.9	0.2	2	19	555	572	554	575	0.92
10	13	1.3	1.9e+02	4.1	0.9	3	23	619	640	617	640	0.95
11	13	2.4e-06	0.00036	22.2	1.2	1	23	649	671	649	671	0.98
12	13	0.0021	0.32	12.9	1.7	1	23	677	699	677	699	0.96
13	13	4.6e-06	0.00069	21.3	2.6	1	23	705	728	705	728	0.98

Sequence Information

Coding Sequence: ATGTTTGACCTAAAGGCCTGTGTTGTGTGTTTAAAAACagatgttcaaatatttagcaTGAACACCGGACAACTGAGACAACAATTCTATCTAATAGCTGggataaagacAAAATGTGAAGATGGTCTACCAGAATATTTGTGTTATCAGTGTAAAGCATATGTAAAAAGCTTCCTAAAATTTCGTGAAAAATGCCAAAGAACATATTATGTGTTGCAAGAAATTTTACGTACAAATAATGAGATAACAAAGTCCATATTAGATGAATTAGATTATAATGTACTCAACATAAGGCCTACCCTTGCTTACATTGACCCAGGTAAGTGTAGTACCCGATAtgaagatataaaatttaaatgggtGAAACAAAATCGTATATGTATAGAACCCCAGGAGAATATTCCAGTGATATTATGTAGTACAgcagaaaatatatttgatgtCTCAACACAAGCAAAATTAACTCAAGAGGatgtaaaaaatgaaaaaaaatacaataatatttctgtTAGCTTAACAAATAATGCTTGTGTtaagaaaaatgaaaatgatttGTTTGATAGTAATATGGATATTAGTACTAATGAGCTGGATGAGGTTCTGGAGCCTCATGAGAAACGAGTAGATGATGCTGATGGTTCTGTTTTGGATGAGGAATATGGCGAAGTTGTTGCTATCAGTTTGAAAGAGGCACAGGCTGTAGTAGAAGTGAATAAGAGGTTTGCTATTGGAAAGTTTCGTTGTGAAATCTGTGATAAAGCATactgtaatgaaaaaaatttgGATCTTCATAAAAGAATGCATGATGAGAATATCAGTGGCACACATTTCTGTTTgttgtgtaaatattattataagacagAATTCCTTTTGAAGAACCATTACAAAGATAAACACATGTACAAGTATTTATGCAGGAAGTGCCCAGAAGTAAGCTTTGACAGatattCAGCAAAAAGGCATTACATGTTGAATCATGGCCGAAAAGGTTCAAAGAATGATGTCACCGTATGTGATAAAGgaattaagaaaaacaaaatagttGTTGATAAGAAAAATAGAAGACAAACtgacatgtatgtattaaaaaaaaacaagaaagcAAAAGATCCGGATGATTTCCTCGTATACACACCTATAAAACAGGAAGAGCAATACACAATGGTGCTGGACAGacagaaaacaaaaaattacattGAATCACCATACAAGTGCCAGTACTGTTTTAAGGGTTTTAGAGAAATTGTTACCTATGAGAAACATATGCAGAAACATGATCCTgtgTACTCTGGTGAGTATCAATGTGACATGTGCAAGATCTACTGTTCCAGCACTCGGAAGATGTACAAGCACATGAATACTACACATAACTTTAAATTCTCCTGTCAGATGTGCAGCTTGGTGTGTTACAGCAGaggACAAGCAAGATCTCATTATCAATGGCACAAAAATGTCACATATTCGTGTCCGCACTGCACTAAAATATTTACGAAGCAGTCAACGAGGTTAACCCACATCCGCATCAAGCACCCGTCTACTTACATCTGTAACATCTGCGGCCACAGCTACGTGAGTGAGGCCGGACTGTACTGCCATAAGAAGATCGCACACAGCGCTGAGGAGATAAAGGTGCAGGAGCAGCCGGCGCCCTGCGTGTCTCTGTACTGCGGCGACTGCGACGTGCAGTTCACCAACCAGAAGGCCTTCGACACGCACTTCGGCTCCTCCAACAAACACGCCGATACTAACGTATCTACCAAACCGTCCCGCAATAAAAAGCGTCCAGGTCGATCTCGCGGGCGACCACGTGTCGCCTCCGACGTACTTAACACAGGCGTCACCAGCGCCTCGCACTGCGAGATATGTCAACAATATCTATCGAACGACGTGCAGGCGAAGCGCCACTACGAGACGGAACACCCTGGAGCCACCTACCTCAAGAGATATATGTGTGATATCTGTGGACACACTACCAAGCAATACGCGAACCTCTTAGTACACATGCGGACACACACGCAAGAAAAGCCGTACTCGTGTCCGCACTGCCAGCGACGGTTCAGTATGGTCAGCAACAGAGACAGACATTTAGTGGTACACACTGGCGAGAAGCGCTACCAGTGCCAGCACTGCAACCGACGCTTCACACAGAGCAGTGCCGTGAAGCTTCACATTCAGACCGTACATATGAAGATACCCTACGCGCCCTGGAACAAGAAGAACCGCAAGCGACGGCAGGAGGGACTCGCCCCCTCCCCGCCCCCCGCCACCCCCGCCGCGCCCCGCCTCGCCCCCGCCGGCACACTACCACATAAGGTGCTACTGGACACCGGGAACTACCTCAGTGCGTACATCACTTATAATGAGTAA
Protein Sequence: MFDLKACVVCLKTDVQIFSMNTGQLRQQFYLIAGIKTKCEDGLPEYLCYQCKAYVKSFLKFREKCQRTYYVLQEILRTNNEITKSILDELDYNVLNIRPTLAYIDPGKCSTRYEDIKFKWVKQNRICIEPQENIPVILCSTAENIFDVSTQAKLTQEDVKNEKKYNNISVSLTNNACVKKNENDLFDSNMDISTNELDEVLEPHEKRVDDADGSVLDEEYGEVVAISLKEAQAVVEVNKRFAIGKFRCEICDKAYCNEKNLDLHKRMHDENISGTHFCLLCKYYYKTEFLLKNHYKDKHMYKYLCRKCPEVSFDRYSAKRHYMLNHGRKGSKNDVTVCDKGIKKNKIVVDKKNRRQTDMYVLKKNKKAKDPDDFLVYTPIKQEEQYTMVLDRQKTKNYIESPYKCQYCFKGFREIVTYEKHMQKHDPVYSGEYQCDMCKIYCSSTRKMYKHMNTTHNFKFSCQMCSLVCYSRGQARSHYQWHKNVTYSCPHCTKIFTKQSTRLTHIRIKHPSTYICNICGHSYVSEAGLYCHKKIAHSAEEIKVQEQPAPCVSLYCGDCDVQFTNQKAFDTHFGSSNKHADTNVSTKPSRNKKRPGRSRGRPRVASDVLNTGVTSASHCEICQQYLSNDVQAKRHYETEHPGATYLKRYMCDICGHTTKQYANLLVHMRTHTQEKPYSCPHCQRRFSMVSNRDRHLVVHTGEKRYQCQHCNRRFTQSSAVKLHIQTVHMKIPYAPWNKKNRKRRQEGLAPSPPPATPAAPRLAPAGTLPHKVLLDTGNYLSAYITYNE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00843040;
90% Identity: iTF_00461859;
80% Identity: -