Basic Information

Insect: Napeogenes sylphis
Gene Symbol: -
Assembly: GCA_959347405.1
Location: OY365788.1:3287604-3291307[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00088 0.13 14.1 1.7 1 23 232 254 232 254 0.98

2 10 0.95 1.4e+02 4.6 0.2 3 23 279 300 277 300 0.93

3 10 0.0025 0.37 12.7 0.3 2 23 322 343 321 343 0.94

4 10 0.00042 0.062 15.1 0.8 1 23 347 369 347 369 0.98

5 10 0.019 2.9 9.9 0.1 1 23 376 399 376 399 0.92

6 10 7.2 1.1e+03 1.8 0.3 3 23 407 428 405 428 0.82

7 10 5.7e-05 0.0085 17.8 1.7 1 23 434 457 434 457 0.97

8 10 0.00012 0.019 16.8 1.4 1 23 463 485 463 485 0.98

9 10 1.1e-06 0.00016 23.3 1.0 1 23 491 513 491 513 0.99

10 10 1.3e-06 0.00019 23.0 1.1 1 23 519 542 519 542 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00088	0.13	14.1	1.7	1	23	232	254	232	254	0.98
2	10	0.95	1.4e+02	4.6	0.2	3	23	279	300	277	300	0.93
3	10	0.0025	0.37	12.7	0.3	2	23	322	343	321	343	0.94
4	10	0.00042	0.062	15.1	0.8	1	23	347	369	347	369	0.98
5	10	0.019	2.9	9.9	0.1	1	23	376	399	376	399	0.92
6	10	7.2	1.1e+03	1.8	0.3	3	23	407	428	405	428	0.82
7	10	5.7e-05	0.0085	17.8	1.7	1	23	434	457	434	457	0.97
8	10	0.00012	0.019	16.8	1.4	1	23	463	485	463	485	0.98
9	10	1.1e-06	0.00016	23.3	1.0	1	23	491	513	491	513	0.99
10	10	1.3e-06	0.00019	23.0	1.1	1	23	519	542	519	542	0.98

Sequence Information

Coding Sequence: ATGACTGATTCAAGCGTATCTAAGAAAGTTAAAGGACCTTTAATTGATCCGGCGTTGTGTAGGTGCTGTCGGTCGATAAAAAGATGCCGCTTGTTAACCACAGAGTACGAGTTTATGGAATCGAAGGAAGTGTATTCTGATATGTTTATGGACGTATTTGGATTGCTTcTAACTCATCTCGATGGAGACAGTAAAGATTCTGCAATATGTGCAACTTGTGTCACAAGACTGCGGGAGGCGAGTGCGTTCAGACGACAGGTGCTGCAGTCTGAGCAAATGTTCATTGAAGGGCTACAGAGTAGAGACGAAATGGAGAACAATGTCAAGCTTGAAATAAAGTTGGAACCAACAAATGAAATGGAATCCCAGGAAGGAGACATGTCTGATAGCCACGatattGATGATGATGTAAAATTGATTACACATATAGATACTTCAGAGCCACAGTTAATCACAAAACCATTaagaaaaacaagaaatacCTACAAAAGCAAAAATTTCCTTATTCAATTAAGTTCCAATACAAAAAttgacaaattattaaatattacaaATCCAAAggaaaaattaacaaaatcaaaaaagaAGTTATCTCAAAAACAAATTACAGACCACGACGAGATGGCTCTCAGGAACACTGTGGATATAGTTACTAATTCATATGTCTGTCCGTTCCATAACCGAATAAGTTTCTACTACTGCTATTATTGCAAGGACCAGTTCACAAACCCGAATGAACTCCGAGAACATACGATGACCCACGATCCCAAAGAATTATTTGAAATGTGcatagaaaataagaaaataccaAAGGTTGATATCACAAGAATCGATTGTCGGATGTGTTCGGAGACAATCGATAATCTCGATACATTTAAACTACATTTGAGTAACGTTCATAATAAAGTGTTATATCCAGTGACGaatgagtttttaaaatttcgtCTGACATTGACGAATTTAATGTGCACCGAGTGTAACAGCATCTTTCCCTACTTTGATGCTTTGAAGAAACATATGACCGATCACTTCGGAACCTTCACATGTGATATATGCGGAGCCTGCTTCCTGGAACAGGCCTCCTTGAGGACTCACatcaaaaatcataataaagttGATGCGAACTTCCCCTGTGAGGTCTGCGGAAAGAATTTAAAATCCAAATACAGCAGGGGGCTGCACGTCGCTACTGTACACGAAAAGAAACCAACAGTGAACTGTTACAAATGTGATTCCAGCTTCCTATCGTACGCGTTACGAAATCGTCATTTAATTGAAGTGCACGGAGACAAACGCACCTTCCCCTGCAAGTTGTGTGATAAAGTTTATAATCGAAGAAAAACATTAATGGAACACAACAGACGGAACCACCTGAAAGTGTACAGACATCAGTGTGATCTGTGCGATCAGAGGTTTTATTTACCTTCAAGATTAAAGGAACACATGGCAACACATACCGGGGAAAGAAACTTTAGGTGTGAATTCTGTGATAAAAGCTATCCCAGACTCCAGTCCTTACAAGAACACATCCGGACCCACAATAATGAGAGAAGGTTCAAGTGTGAAGTGTGTAATTCAGCATTTACTCAGAACGGCAGTTTAAAGAACCACATGAAGACTCAACACCAAGTTTATGATATAGATGGaagttttaattga
Protein Sequence: MTDSSVSKKVKGPLIDPALCRCCRSIKRCRLLTTEYEFMESKEVYSDMFMDVFGLLLTHLDGDSKDSAICATCVTRLREASAFRRQVLQSEQMFIEGLQSRDEMENNVKLEIKLEPTNEMESQEGDMSDSHDIDDDVKLITHIDTSEPQLITKPLRKTRNTYKSKNFLIQLSSNTKIDKLLNITNPKEKLTKSKKKLSQKQITDHDEMALRNTVDIVTNSYVCPFHNRISFYYCYYCKDQFTNPNELREHTMTHDPKELFEMCIENKKIPKVDITRIDCRMCSETIDNLDTFKLHLSNVHNKVLYPVTNEFLKFRLTLTNLMCTECNSIFPYFDALKKHMTDHFGTFTCDICGACFLEQASLRTHIKNHNKVDANFPCEVCGKNLKSKYSRGLHVATVHEKKPTVNCYKCDSSFLSYALRNRHLIEVHGDKRTFPCKLCDKVYNRRKTLMEHNRRNHLKVYRHQCDLCDQRFYLPSRLKEHMATHTGERNFRCEFCDKSYPRLQSLQEHIRTHNNERRFKCEVCNSAFTQNGSLKNHMKTQHQVYDIDGSFN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00958877;
90% Identity: iTF_00959645;
80% Identity: -