Nsyl032225.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Napeogenes sylphis
Gene Symbol
-
Assembly
GCA_959347405.1
Location
OY365785.1:30549516-30560366[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.00048 0.071 15.0 4.0 1 23 13 35 13 35 0.98
2 16 0.00031 0.046 15.6 6.4 1 23 41 64 41 64 0.98
3 16 0.00042 0.062 15.1 3.4 2 23 70 91 70 91 0.97
4 16 4.8e-06 0.00071 21.2 0.4 1 23 97 119 97 119 0.98
5 16 0.00024 0.036 15.9 3.9 1 23 125 147 125 147 0.98
6 16 0.00026 0.039 15.8 0.4 1 23 154 177 154 177 0.92
7 16 9.9e-05 0.015 17.1 0.3 2 23 186 208 185 208 0.96
8 16 0.00062 0.093 14.6 1.4 2 23 215 236 212 236 0.93
9 16 1e-05 0.0015 20.2 0.9 1 23 242 266 242 266 0.96
10 16 0.00082 0.12 14.2 2.1 1 23 272 294 272 294 0.95
11 16 8.9e-05 0.013 17.3 1.0 3 23 303 324 302 324 0.96
12 16 0.64 96 5.1 0.1 1 23 330 353 330 353 0.92
13 16 0.026 3.9 9.5 1.9 2 20 360 378 360 380 0.96
14 16 5.1 7.6e+02 2.3 4.5 1 19 550 568 550 572 0.89
15 16 6.2 9.3e+02 2.0 0.3 2 16 583 595 582 603 0.68
16 16 0.0019 0.28 13.1 2.0 1 23 726 748 726 748 0.98

Sequence Information

Coding Sequence
atgAGTAAAACAACTAAGCACAGAGCCTTTGatgattttaaatgtaaattttgttCTAAGAGGTTCAATGAAAAAGCAGGTCTCAATCACCACTTACAACTACATACAACGGATCGTCCATACACATGTCCCCACTGCACGCACACAAGCAAGACCAAGAAGTACTTAAGTCGTCACATCAAGACAGTTCATAATCCTGGGGCAGAAGAGTGTGGAGTGTGCGGGAAAAAGTTCCATTTCAAATGTCTTTTGGAACGGCACATGTTAATACATACAGatacGAGGCCCTTTAAATGTGATGTCTGTGGGAAAGGATTTAATTCACCGTATTCTTTATCAACCCACAAGTTGATACATGCTGATTTAAAACCGTACAAATGTTCGTTCTGCGACTACGCATGCAGAGATAACTCAACTCTGCGCAAACATGAGGAACGACACATGGGTATTAAGAAGCGCTATGAATGCAGAATGTGCAATAGAAGTTATAAAACCAAAAGCGTACTCAAAATACACGTCGCTGAAGTCCACATGGACATTGATGTCAAGAATTCTCCTTGCACGATCTGCGAGAAGATGTTCAAGTCTGTGTCGCGGCTCAACAGCCACATTaaaattgtCCACAAGCGCATATATTCATGTAAATGCGATATTTGTGGAATGGTATTAAGTAATAGATACAACATGGCGTCTCATCTCACAAAACACGCAAAATATAAACCATTTGTGTGCAGTTTTGAAAAGTGCGGGAAAAGGTTTAAGGATAAGGGCGGTCTCAAGAAACACACAATAATCCACTACCCAGATCAACAACACCCTTGTCTTATTTGCGGTAAACGCTTCGCGCGACTTCACAGACTACAGACACACGCGCTGCAGCACAGAGAGAAGACCAAGACTGTGTTCTGTGACTACTGTGGGAAGGGTTTCTACAACAAGAACTATTTAGTGACGCACATAACGAGGAAGCACTATATAAAGCAGCACTACATATGTGATATTTGCGGACTCTTGACGTACAACAAACCAAGTATAGTGATGCATTTGAAATATGGACACTTGAACGAGAATgaTCGCAAATGCAAGATATGTAAGAAGATATACAAAAAGCATCAATACTTAAAAATGCATTACTGGAACACGCATTgcgttaaatataaagttatgaaTAGGAGgcCACCAAAAAAACGTATTGTAATAAAAGAAGAACCAAAAGACTATAAAGAAATTGAACTTTTGCACGAAGTCAAAGTAGAACATTTGAGCGATTCCGAAGAGAAATCAAACGAATACTCCAAGCGTGTGCTCTCAGAGGACGTATCAAGAGCTTTATTATCCAAAGATCAGTCCCCTCTTCAACACATGGATGACTTTTTTATAGAACACATTATAAAATCAACGGAGCCTGTACAAGAAGTACCTAAAAACATGGAAATCGACAAGAAGAGTCAGAGGAAAGCTAAAAAGCACATAAACAAACTGCTGGTTAGAGCAAAACGAAAGAAAGAGCTGAAGGAATTAGAGAGAGCGAGACGGGTGTATAATGACAGGATAAGAAAAGCTTCGGGAGTGCCATTAGATTTCACTCCCGATATTGCAGTTAGTGTTACggacaaaaacaaaacaaataaatttgtcaTAAACACTCATCAGTGTTACATTTGCTTTAAGttaTACGAAACAAAAGAAAAACTGCTGGAACATTGTCAAGAACATTTCGATGTTTGTAATTccacaattttaaaaaaatgcccTCTCTGCGACTacgtaactaaattaaatattgtgagACATTTGAAAAATGTTCACAAAATTAACATCAAAATGCAATATAACATTAAGGATAGAAAGAATAACAATGACGGGTCAAGATTCTATTATGCTATTGATAATGATAAAGTTGACAAAATAGAAGTTATACCAAGTGTCAAGAATTTGAACAAACAAGCCTATTTAAGAATGGATAAGAGAAAGCGAGATTTAAATAACAAGAGAATACAGAAAACAAAGCTAGTTAAAAAAAACGGAGAGTGGATAGTTGAGAAGTTAAATGTTAAAGTCAATGATTATATAATACCCAAAATAGATGATGTTTTGAATGTTGGTAGCAATGATTATTTCGGTAGATTGAAAAGGTTGAGTGTTATCGCTAAAAAGGATGGAAAGAAAATAATGTATCCGTGTGAAAAGTGCGAGAAGATTTGTCAAACTCTGAGTGCATTGAAATTGCATTCAAGGAAGCATGAGGATAATCCAAAACCGTTCAAACCTAAAGTCTGGAAGCATAAGTCAAATCAAATACTGACTGCTGAACCAAAACCGATAAAAACAACGACTCCATCACAAAGTAGATACGAAAAACCGAAACCGATCGTCAATAATCACAAATGTGATCCGAAATTGCGGGacttttatgaaaataacataaagGGTGGGGATATAGAGTTTTggcattttttgaaaattttcaacAAAATGTCCAGAGAAAATATCAACGATTTCGAAGATTTGGAGAATCGTAGCGATTTTGGTATACATTATAAGGAAAAGATTGttgaagaaaaacaaattaccCCTCAAGGCgcgaatgatattaaaaaacgaAATCCTCGTAAAGCAGCATTTATAAGAACTATAATGATAAGCAGAAAAGAATATAATAGAAGAAAGTTTTTGAAGAAAAAATTGAGAGAAAAAATAATTCCAACAACTTAA
Protein Sequence
MSKTTKHRAFDDFKCKFCSKRFNEKAGLNHHLQLHTTDRPYTCPHCTHTSKTKKYLSRHIKTVHNPGAEECGVCGKKFHFKCLLERHMLIHTDTRPFKCDVCGKGFNSPYSLSTHKLIHADLKPYKCSFCDYACRDNSTLRKHEERHMGIKKRYECRMCNRSYKTKSVLKIHVAEVHMDIDVKNSPCTICEKMFKSVSRLNSHIKIVHKRIYSCKCDICGMVLSNRYNMASHLTKHAKYKPFVCSFEKCGKRFKDKGGLKKHTIIHYPDQQHPCLICGKRFARLHRLQTHALQHREKTKTVFCDYCGKGFYNKNYLVTHITRKHYIKQHYICDICGLLTYNKPSIVMHLKYGHLNENDRKCKICKKIYKKHQYLKMHYWNTHCVKYKVMNRRPPKKRIVIKEEPKDYKEIELLHEVKVEHLSDSEEKSNEYSKRVLSEDVSRALLSKDQSPLQHMDDFFIEHIIKSTEPVQEVPKNMEIDKKSQRKAKKHINKLLVRAKRKKELKELERARRVYNDRIRKASGVPLDFTPDIAVSVTDKNKTNKFVINTHQCYICFKLYETKEKLLEHCQEHFDVCNSTILKKCPLCDYVTKLNIVRHLKNVHKINIKMQYNIKDRKNNNDGSRFYYAIDNDKVDKIEVIPSVKNLNKQAYLRMDKRKRDLNNKRIQKTKLVKKNGEWIVEKLNVKVNDYIIPKIDDVLNVGSNDYFGRLKRLSVIAKKDGKKIMYPCEKCEKICQTLSALKLHSRKHEDNPKPFKPKVWKHKSNQILTAEPKPIKTTTPSQSRYEKPKPIVNNHKCDPKLRDFYENNIKGGDIEFWHFLKIFNKMSRENINDFEDLENRSDFGIHYKEKIVEEKQITPQGANDIKKRNPRKAAFIRTIMISRKEYNRRKFLKKKLREKIIPTT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01033938;
90% Identity
iTF_01033938;
80% Identity
-