Nsyl036677.1
Basic Information
- Insect
- Napeogenes sylphis
- Gene Symbol
- Zfy1
- Assembly
- GCA_959347405.1
- Location
- OY365787.1:15879863-15882707[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.18 27 6.8 4.3 1 23 81 103 81 103 0.95 2 17 0.00033 0.049 15.5 2.3 2 23 110 132 109 132 0.92 3 17 5.3e-05 0.0078 18.0 1.5 3 23 140 160 139 160 0.97 4 17 1.6e-06 0.00024 22.7 3.6 1 23 166 188 166 188 0.98 5 17 0.00063 0.094 14.6 0.3 1 23 194 216 194 216 0.96 6 17 2.4e-05 0.0036 19.0 2.7 1 23 222 244 222 244 0.97 7 17 0.82 1.2e+02 4.8 7.7 1 23 250 272 250 273 0.92 8 17 0.00043 0.064 15.1 0.4 1 23 302 325 302 325 0.95 9 17 0.00081 0.12 14.2 4.1 1 23 331 353 331 353 0.96 10 17 0.00043 0.063 15.1 0.0 1 23 359 381 359 381 0.98 11 17 0.0076 1.1 11.2 0.2 1 23 387 409 387 409 0.94 12 17 0.00091 0.14 14.1 0.9 2 23 612 634 612 634 0.96 13 17 1.8e-05 0.0027 19.4 0.3 1 23 640 662 640 662 0.95 14 17 0.00011 0.016 17.0 0.8 1 23 668 690 668 690 0.96 15 17 0.042 6.2 8.8 6.5 1 23 696 718 696 718 0.96 16 17 0.00012 0.018 16.8 0.2 1 23 724 746 724 746 0.96 17 17 0.0027 0.4 12.6 0.4 1 23 751 774 751 774 0.93
Sequence Information
- Coding Sequence
- ATGGACGCCTTCCAAGCACTTAAAACTTTTCGAAATCATTTCGTAACACATCACGAGAGTCGAAGCCGATACCCGGACTTCTCGGACTCGAGCGATTCCGAAGCGGAAAAGATCATCTCCGAGTCGGACCCGAATCGTTTCGACGATCTGACGGACGGCAACATGCGGAAGGACAAGATGGACGAGGAGACGCGTCTCGAGCTCGACGAGGTTCAGACGAAAATCAACGGAAAAGTGTACTTCACGTGCAAGATATGCGACAAGAGGCTGAGCTCGACGCACACGTACATCTTCCACAAGCGCATACATACGGGCGAGCGACCGTGCGTGTGCCACGTGTGCGGCAAACAATTCCGGGCGCCCACCGGGCTGAGGCGCCACCTCACCGAGACGCACGAACGCGCGCGACGCCCCGCCTGCACGGCCTGCCACAAGAGTTTCGCCAACTCGCAGAACCTCAAGCAGCATGCGCGCATCCACACAGGCGAACGCCCCTTCGAGTGTGCGCACTGCGGGAAGCGCTTCACGCAGAGCGGCTCGCTGCACGTGCATCTCAAGACACACGGCGCGCTGTTTCCACACGCATGCGCCGACTGCGGCGCCGGCTTCCGTTTGCGCTCCGGACTCGCGCGACACCGCCTCAAGCACACGGGCGAGCGTCCGCACACCTGCGCGCTCTGCGGAAAGGGCTTCCGACAGAAGCACGAGCTCAACAGCCACGCGCTCACACACTCCGACAGTAAGCCGCACGCCTGCGCCCTCTGCGGCTCCGCCTTCCGACAGCGACGGGCCCTGAGGCACCACTGCAAACGGCACCACGATAACGAACCAACGGAGGGAACACATACATCGAAGGCGACGTTACGGCACGACAACGAAGAGGCAACCCGCGAGGCACGTCGTCACCGGTGCTACGTGTGCGCGAGAACGTTCTCAGACGGCGGCAATCTGGCACGACACGTGCGCGCGTTGCACGCCGGCCGCCGACCGCACGCCTGCACGCTGTGCCGCCGCGCATTCACGCGCAAGCAGCACCTGGACGAGCACGTGCGTTCACACTCGGATCGACGCGACTATGTGTGCGACGTGTGCGGGAAGGCATCCAAAACGGGCGCAGGGCTGCGCGCTCACCGCCTCGTCCACGCGGAAGGATTCTCGTTCGCGTGCGGAGCGTGCGACTCCGCCTTCAAGACGCGACGCCAGCTGCGCGCGCACTCGTCCGTGCACACGGGCGAGCGCCCTCACGCCTGCCCGTCGCCGGGCGCGGCGAAGGAGCGCGCCTGCAGGTATCGCGCCACGGAGTGCCACGATGATGTACCGTTACGGGAACGCTTAAAGACCGTTCGCAATGACGAATATTTACGACTCCGAGAGTGCGACGACCGCGTCGACAGGGGTGACTCCGTTGCGCACGTGACTCTGCCCGCTttccattataataaaattagagagaaaaaaaataagcagatcgtaagaatttatttaaatgattcattaaaatatagaaaatttaaatcgACACAGTGCAACACTTCCGATCCGATCGCGACAAATGATGTAGAGAAGGAAGTCCTCCACGACGCGGATGGCGAGGTGGCCCATGGTGAATTTTCCGAACAGAGTACCGTGGAAGATTTCGGTCCACTGCCGGAATCCGTTTTCGAAGCGATCGAAGATTCGCAAGAGTGTGATGAAGTAGGAAACAACTTCAACCGAAACGAGTCGGCAACTAACGTAAACGTCGCCATAGAAGAAGTCAACGATCACCGACACCCGTCCCCGGACGAAGTCACCACCATGAATAGAACCGACGCGAAGAGTAACAAGACTCGAAAGTGTCCGAAATGCGACAAGACGTACGCCGCTTCCTCGAGCTACTTCTATCACCTAAAATATTCTCACAACCAAACTAAAGAACACGAGTGCGAAGTGTGCGGAAAAAAGTTCGGGACCAAGGCGAGTCTGACGGCCCACGGCTCCATCCACACCGGCGACCGGCGCCACGCGTGCAAGGAATGCGAGAAGAGGTTCCGCACCGCGGCCGGCCTGTACATCCACGAGCAGACGCACTCCGGCGTCAAAAAACACAACTGTTCCTCGTGCGAGCGCTCGTTCCGGTGGCGCACGCACCTGCAGAGGCACGAGCGGCGCCACCGGGGCGAACGGCCGCACGCGTGTCCCACGTGTGCCCGCGCCTTCAGCGTGCGCGCCGACCTGCTGAGACACGCGCGGACGCACGCGGCCGGAGCGCACGCCTGCGACCGCTGCGGAGGCACCTTCGCACAGCCGCGGTACCTCAGGGTGCACGTTCTCAATAAACACCCCGATGCCTCTCCCGCGAGGaatgattgtaaataa
- Protein Sequence
- MDAFQALKTFRNHFVTHHESRSRYPDFSDSSDSEAEKIISESDPNRFDDLTDGNMRKDKMDEETRLELDEVQTKINGKVYFTCKICDKRLSSTHTYIFHKRIHTGERPCVCHVCGKQFRAPTGLRRHLTETHERARRPACTACHKSFANSQNLKQHARIHTGERPFECAHCGKRFTQSGSLHVHLKTHGALFPHACADCGAGFRLRSGLARHRLKHTGERPHTCALCGKGFRQKHELNSHALTHSDSKPHACALCGSAFRQRRALRHHCKRHHDNEPTEGTHTSKATLRHDNEEATREARRHRCYVCARTFSDGGNLARHVRALHAGRRPHACTLCRRAFTRKQHLDEHVRSHSDRRDYVCDVCGKASKTGAGLRAHRLVHAEGFSFACGACDSAFKTRRQLRAHSSVHTGERPHACPSPGAAKERACRYRATECHDDVPLRERLKTVRNDEYLRLRECDDRVDRGDSVAHVTLPAFHYNKIREKKNKQIVRIYLNDSLKYRKFKSTQCNTSDPIATNDVEKEVLHDADGEVAHGEFSEQSTVEDFGPLPESVFEAIEDSQECDEVGNNFNRNESATNVNVAIEEVNDHRHPSPDEVTTMNRTDAKSNKTRKCPKCDKTYAASSSYFYHLKYSHNQTKEHECEVCGKKFGTKASLTAHGSIHTGDRRHACKECEKRFRTAAGLYIHEQTHSGVKKHNCSSCERSFRWRTHLQRHERRHRGERPHACPTCARAFSVRADLLRHARTHAAGAHACDRCGGTFAQPRYLRVHVLNKHPDASPARNDCK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -