Basic Information

Insect: Napeogenes sylphis
Gene Symbol: -
Assembly: GCA_959347405.1
Location: OY365785.1:14431875-14435479[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 8.5e-06 0.0013 20.4 2.9 1 23 135 157 135 157 0.98

2 14 0.0025 0.37 12.7 2.6 1 23 163 185 163 186 0.93

3 14 0.0035 0.52 12.2 2.3 1 23 192 214 192 214 0.97

4 14 2.3e-05 0.0034 19.1 4.4 1 23 219 241 219 241 0.98

5 14 1.8e-05 0.0027 19.4 6.3 1 23 247 269 247 269 0.99

6 14 6.4e-07 9.5e-05 24.0 1.2 1 23 275 298 275 298 0.94

7 14 1.4e-06 0.00021 22.9 4.8 1 23 304 326 304 326 0.98

8 14 1.3e-05 0.002 19.9 0.8 1 23 332 354 332 354 0.98

9 14 0.0001 0.015 17.1 1.3 1 23 360 382 360 382 0.99

10 14 2.5e-08 3.7e-06 28.4 1.3 1 23 388 410 388 410 0.99

11 14 3.4e-06 0.0005 21.7 3.7 1 23 416 438 416 438 0.98

12 14 0.063 9.3 8.3 3.1 1 23 444 463 444 463 0.95

13 14 7.8e-07 0.00012 23.7 0.8 1 23 469 491 469 491 0.98

14 14 0.00021 0.032 16.0 6.2 1 23 497 519 497 519 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	8.5e-06	0.0013	20.4	2.9	1	23	135	157	135	157	0.98
2	14	0.0025	0.37	12.7	2.6	1	23	163	185	163	186	0.93
3	14	0.0035	0.52	12.2	2.3	1	23	192	214	192	214	0.97
4	14	2.3e-05	0.0034	19.1	4.4	1	23	219	241	219	241	0.98
5	14	1.8e-05	0.0027	19.4	6.3	1	23	247	269	247	269	0.99
6	14	6.4e-07	9.5e-05	24.0	1.2	1	23	275	298	275	298	0.94
7	14	1.4e-06	0.00021	22.9	4.8	1	23	304	326	304	326	0.98
8	14	1.3e-05	0.002	19.9	0.8	1	23	332	354	332	354	0.98
9	14	0.0001	0.015	17.1	1.3	1	23	360	382	360	382	0.99
10	14	2.5e-08	3.7e-06	28.4	1.3	1	23	388	410	388	410	0.99
11	14	3.4e-06	0.0005	21.7	3.7	1	23	416	438	416	438	0.98
12	14	0.063	9.3	8.3	3.1	1	23	444	463	444	463	0.95
13	14	7.8e-07	0.00012	23.7	0.8	1	23	469	491	469	491	0.98
14	14	0.00021	0.032	16.0	6.2	1	23	497	519	497	519	0.98

Sequence Information

Coding Sequence: atgacGGAATCATACAGCATTGATGGTATTTGTCGCTGTTGTCATGCTCAGGGTACATTCAAGAATCTTAGTGAAACGCATACGGCGGAAGGGAACCAAGAAATTTACTACAACATTATTCaagaaacatttaatattgaaATAAAACCTATAGCAAAAATGGATGGTTACTCCATATGCAATATTTGCATACCTAAGTTGCTTGCTGCAAATGAATTCAGACAGCAGGTACTTACCTGTgagaaagtaattaaaaagtattataatgataataaagatgaaTGTAGCAATGGAGATGTGGATGATAAACCATTATCTACTTTCAGAAGTTTTGAAGTTGAGTTGACCATACATAAAAcagataaatacataaacaagtcacagaaaacaaaaataaaaaaattctgtTGTGATGTATGTGACAAGAGATTTTCTTACAACGGCTCTCTGGAAGTACACAAGAAGACTCACAGCGGTGAAAAATCGTTCCTATGTAGattatgtgataataaatttactttaaataaagaattaataaaacacATCAACTCTCATCACTCGCTGGACGGACTGTTTCCGTGTAGATTTTGCTCAAAACATTTAGAAAACGCTCGCTCATTAAAAAATCATATGACCatacattttaatgaaaaatttacGTGCACGCATTGTAACAAAGAATTCCAaagaaaaaaaggtttaaaGGAACATTTAAAGATACATACGGGCGAAAAAAACTACTCTTGTACGCTGTGTAATAAGGCCTTCTGTCATAATCAAACACTCAAATCTCATATGTTAACGCACACGGGTGAGAGACCGTACGTATGTGACATATGCGGACGAAGATTCCCTCAACGAACACATTTAAAACGGCACATATTCCTAATACACACAGGTGTAAAGCCTCATACATGTAAGGTGTGCAACAAACAGTTTTCGAGCAAGAGTTACTTATCAATACACCAGCGGACGCACACGGGTGAACGACCATACTCTTGTGAAGTTTGTAAGAAGGATTTCACAGCGTATACAACTTTGAAAGTACACATGCGAGTGCATACAGGTTTAAAACCGTATGTGTGCACATTCTGTAACCGCCAATTTGCTCAATTAGCCAGTTTTAAGCTTCACGAAAGAACTCATACCGGGGAACGACCGTACACTTGTAAAGTGTGTAAAAAATCGTTTTCAGATAACGGTTATTTGAAAATTCATATGCGAGTACACACAGGGGAGAAACCGTTTTGCTGTGAGATTTGTAAACGAACGTTCAGAGAGACTGGACAATTAAAAAGACACATGAGAGTACATACTGGCATAAAACCGTATACATGCAAGATATGTAACAAACAGATTGGTAACTTATCCAAGCACATGCGCGTACACACAGACGAGCGACCATTCAACTGTAATATATGCAACAAACAGTTTTCTATTAACGGTAATTTGAAACTGCATATGCGTATACACACGGGTGAGAAACCGTTCAGTTGCGATGTGTGTAACAGCCACTTTACACAAAGCAGTGGCTTAAAAAGACATAGATGCACGCATGTGAAGGCAGACTGA
Protein Sequence: MTESYSIDGICRCCHAQGTFKNLSETHTAEGNQEIYYNIIQETFNIEIKPIAKMDGYSICNICIPKLLAANEFRQQVLTCEKVIKKYYNDNKDECSNGDVDDKPLSTFRSFEVELTIHKTDKYINKSQKTKIKKFCCDVCDKRFSYNGSLEVHKKTHSGEKSFLCRLCDNKFTLNKELIKHINSHHSLDGLFPCRFCSKHLENARSLKNHMTIHFNEKFTCTHCNKEFQRKKGLKEHLKIHTGEKNYSCTLCNKAFCHNQTLKSHMLTHTGERPYVCDICGRRFPQRTHLKRHIFLIHTGVKPHTCKVCNKQFSSKSYLSIHQRTHTGERPYSCEVCKKDFTAYTTLKVHMRVHTGLKPYVCTFCNRQFAQLASFKLHERTHTGERPYTCKVCKKSFSDNGYLKIHMRVHTGEKPFCCEICKRTFRETGQLKRHMRVHTGIKPYTCKICNKQIGNLSKHMRVHTDERPFNCNICNKQFSINGNLKLHMRIHTGEKPFSCDVCNSHFTQSSGLKRHRCTHVKAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01033926; iTF_00461748;
90% Identity: iTF_01033926; iTF_00461748;
80% Identity: -