Nsyl000274.1
Basic Information
- Insect
- Napeogenes sylphis
- Gene Symbol
- -
- Assembly
- GCA_959347405.1
- Location
- OY365776.1:1853196-1857069[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.6e-11 1.4e-08 35.6 0.1 2 42 14 54 13 57 0.88 2 2 9.9 5.5e+03 -1.4 0.0 28 43 244 260 243 261 0.84
Sequence Information
- Coding Sequence
- atggaaTCAACCGATAAGAAAACACGTGGTAAATGGACTGAGAGACAGCTTAAATCAGCTATTGAATCGGTCAAAAGCAAGCAAATGTCACAACGACAAGCAGCAGCAACCTTCAAAATCCCAAGAAGAACTTTACGAAACCATTTAAAATCTGGCATCGAGGAAAAGAGCATTGGACGAAAAACTGTACTAACTAAAGACCAAGAAAAAGGTTTAGCAAAACGAATAATACGACTGGCTCAAGTAGGAGTGCCGTTGACCCGCAAGATTGTTAGGAAACAAGCCTACTTATTTTGTAAAGCCCATGATATAACAAATACCTTCAATGACACAAAATGCATAGCTGGCAGAAAATGGCTGAAGAATTTTTTGAAAAGAAACCCCGAAATTTCTATTCGCAAAGCACAGTTTATGAACCCTGCAAGGGCTCAGAAATTGAACAAGCACAATGTGCAACTGCATTTTCAAGCAGTAAAAAAACTGTATGATGATTTAGACATTCCCCAACATCCAGAAAGATTATACAATATCGATGAGAAAGGATGTCGATTAACGTTGCACCACCAGCAACAAGTTCTTGCACAAAAGGGAAGCAAAAGAGTACATTTCATAGCAAATGAACATGCTGAAAACGTCACAATCGCAATGTGTGTTAACGCTTCTGGTAATTCAGTTCCacctatgattttatttaaaggaaAAAGACTACGCCCAGAATTTAACGATAATTTGCCTGATAGCACTCTTGTCAATATGGCACCAAAAGGTAGTATGACTACTGAATTGTTTGTAGACTTCATCCATTATCTCGGCAACTACAAGTCGCCTGGGAAATGTTTACTTATTTTCGATGGAGCTGCTTCGCATCTAGATGCGAGGATTGTCGATGCTGCAgatgaaaataacataatattatattgtttaccaTCCAACACCACTCATGAGTTGCAACCATTGGATAAATCTGTCAATAAATCATACGAACACCACTGGGATGAAGAAGTATTATCGTACGCCTATCGTCATCCAGAACGCAAAATCACCAAGgcaagatttaataaaattttctccAGGGTATGGCCTAAGTGTATAACCCCAGAAAATATAAAGAATGGGTTTAGAGCAACTGGACTCCATCCTTACAATCCGAGTGCAATTCCCATAGAGGCATTTGCACCTTCTATCCTCTCAGAACGGCCTCCTATGCACGAAACAGCTCAGCAACAAAACAGCTCTGACACGAATTGTGAAGAAAATGATTGCACATCGCCGTCTTTATTAGCTGAAGATCGTGATGTACCTTACTGTACCTTTGAGTCGCAAAGATTACAGCCTTTGGCTCTATCTTTGCTTGAATGTTCATCTCCACCTCCATTAAATCTGCAGTCAAAAAATCAAACGTCAACTAATGCAGTTAAGAAATTGGTTGACTACAGTTCTTCCTGTGAATCTGATGCTGAGGATATAGAACAATCAGAGATTATTTGCGATAGGGAACGACAATATCGTTCTCCTATTCCAAGCACGTCTGGACTAGGACACCATTTACAACGAAGACCAGTAATTGTAAGAGTTGGCAATTTCACTAGTGGTATACAAGCAGGTGAAGATGTGGATATTGTGTGCTACGCGGATGACACCGCTGTTTTATTTTCCGGCTTATCCTGGGAGACTGTTATTAAACAGGCTGATTCTGGTATACGTGCGCTTTCCAGATGGTTATTGAAAAATCTCTTAACTCTCAACGTGAAAAAAACAGTATACCTTTGTTTTTCTAAAACAAATTCTTCAGCACCAAAGTTTCCACTTAACCTCAAAGTTCATAAGCCAACCTGTAACTCTATTACGTGTGCCTGTGAAGCTTTAAATAGAGTCGAAACCGTGAAGTACCTTGGTGTTATCCTAGATGAAAACCTAAATTTCAAAAGCCACATTGAGGTACTCTCCGGGCGGGTGCGCAAGGTTATTGGAATCATGAAGAATTTGCGGGATGTGGCTCCTCCTGATATACTGATATTGCTTCTGCAATTACCACCCACACCACCCATTCAAAAATTTGCTTATTACCATAAGATTTATACGTCATCAGAATCAGAATCAGAAGATAAAGGAGTGGAACCACCTCGAATAGAGCCGGATCGAATAGAGACTTGGGACATCGAACAAGACGATCGTGATTCCGATGATTCTGATAATGTGccattatcaaatttaaaacgAAGCATTAATCAGAAAAGACAAAAGAGGTCTCCGTTTCACGAATTCATACCGACACCTAACTTTGCAACAGTCAAAAGTAAACCAAGGCGAAaagcaattaattatattgGTCAAAAAGTAACCAAAGATCTGTTTAATGCTGTTCAAGAAAAGAAATCAAAAATAGCAAAACCGAAGACAAAACATACCGAAGATAACAGCCGAAGAAATAAcctaagaaacaaaaataataatggagGTGGAGACGCAGATAAAAAGAGGGTTAAAGTAAAAAGAGCATTTGTTAACAAAAGAGGTACTAGGCCAAAAGAAAACCAGACCGAAACATGGTATTGCCGAGCTTGTAAAGTTGAACGAGTCGCAGATACGCGGCAATGCTTTATTTGTTCTTTGTGGTACCACGAAGAATGTGTTGGGCTAACGAAGAATGACGTAGAAGAGTTTTTATGCCCAGATTGTAACTAA
- Protein Sequence
- MESTDKKTRGKWTERQLKSAIESVKSKQMSQRQAAATFKIPRRTLRNHLKSGIEEKSIGRKTVLTKDQEKGLAKRIIRLAQVGVPLTRKIVRKQAYLFCKAHDITNTFNDTKCIAGRKWLKNFLKRNPEISIRKAQFMNPARAQKLNKHNVQLHFQAVKKLYDDLDIPQHPERLYNIDEKGCRLTLHHQQQVLAQKGSKRVHFIANEHAENVTIAMCVNASGNSVPPMILFKGKRLRPEFNDNLPDSTLVNMAPKGSMTTELFVDFIHYLGNYKSPGKCLLIFDGAASHLDARIVDAADENNIILYCLPSNTTHELQPLDKSVNKSYEHHWDEEVLSYAYRHPERKITKARFNKIFSRVWPKCITPENIKNGFRATGLHPYNPSAIPIEAFAPSILSERPPMHETAQQQNSSDTNCEENDCTSPSLLAEDRDVPYCTFESQRLQPLALSLLECSSPPPLNLQSKNQTSTNAVKKLVDYSSSCESDAEDIEQSEIICDRERQYRSPIPSTSGLGHHLQRRPVIVRVGNFTSGIQAGEDVDIVCYADDTAVLFSGLSWETVIKQADSGIRALSRWLLKNLLTLNVKKTVYLCFSKTNSSAPKFPLNLKVHKPTCNSITCACEALNRVETVKYLGVILDENLNFKSHIEVLSGRVRKVIGIMKNLRDVAPPDILILLLQLPPTPPIQKFAYYHKIYTSSESESEDKGVEPPRIEPDRIETWDIEQDDRDSDDSDNVPLSNLKRSINQKRQKRSPFHEFIPTPNFATVKSKPRRKAINYIGQKVTKDLFNAVQEKKSKIAKPKTKHTEDNSRRNNLRNKNNNGGGDADKKRVKVKRAFVNKRGTRPKENQTETWYCRACKVERVADTRQCFICSLWYHEECVGLTKNDVEEFLCPDCN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -