Nina024756.1
Basic Information
- Insect
- Napeogenes inachia
- Gene Symbol
- -
- Assembly
- GCA_959347355.1
- Location
- OY365802.1:2425866-2440165[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.8 3e+02 3.0 0.4 1 20 268 287 268 288 0.95 2 13 0.7 75 4.9 1.5 1 23 308 331 308 331 0.92 3 13 0.1 11 7.6 1.4 2 21 369 388 368 389 0.92 4 13 1.7 1.8e+02 3.7 0.3 1 9 394 402 394 403 0.90 5 13 3.5 3.7e+02 2.8 3.5 1 21 577 596 577 597 0.92 6 13 1.7 1.8e+02 3.7 0.7 1 23 631 653 631 653 0.93 7 13 0.00025 0.027 15.8 2.2 2 23 738 759 737 759 0.96 8 13 0.15 16 7.1 0.5 2 23 775 796 774 796 0.96 9 13 2e-07 2.1e-05 25.5 2.4 1 23 802 824 802 824 0.99 10 13 0.012 1.3 10.5 3.4 2 23 830 851 829 851 0.96 11 13 0.61 64 5.2 1.6 3 21 859 877 857 878 0.90 12 13 3.9 4.1e+02 2.6 0.1 1 20 882 901 882 902 0.90 13 13 0.00014 0.015 16.6 0.7 3 23 914 935 913 935 0.97
Sequence Information
- Coding Sequence
- atgaaaagtagTAAAAAGAGAACTCGAAAGTCTAAATTAGTGCCGCGGCAATGCTTGGATTCGGATGACGAAAACATAGCATATATGCAGAATGAAATTGAACAAACTATAGCCAGGATGACCTCAAATTCAATTCTCAAAAAATTAAACCGACACACAGAAGAACCTTTGAAATTTTCAATTAAGGTAGAAGTTGAAGAAGTGGATGAaccaataaataatcaaattaaacaaGAAGAAACAGAGGGAGAATTGAATATATCAATAGACTCTGTAGTAAGTTTAAAGGAACCAAACActgataaaaatactaaaatcaaGTGCCTTCATGAAAAAACAACCTCCCCGGCAGCAATACTGAAAGAAAGAATGATAAAAGAAGAATTTAATAGAGTGTCTAAACAAACAACAAGTAAAGCAGATAAACTTATAGAAATTCATATATTAAACTGGGATGGGAAATATTCTCAGGAAATAGAGATAGATGATAAGGAATTGCAATTGCAAACCGTTATTGGGAAGTGGAAAAATTGGCACAAAACAAACCCCAAACACCGAGATATACCTTTGTCATACAAATGTTATATATGTTCAAAGGCCTGGTGGCATTATTATGATTTCCGTCAACATTTCCACACTCATGATGTAGCTGAATTAGAAATAGAATCTTGTGGCCACGAGTGTAACGTTATCGCTTATCAAAATGAACAACCAGATTATGATATACCCTTAGATGATACTTGTTGGCGGTGCGGTCAAGACTTTTCATCTCACCAAATTGCTAAAAAAGGCAACAAGATTTATAGATGTAGCGGATGTTTAGATAGATTCATTACATGTATGCTGTTAAATGAGCATTTGGGGAATTGTCAATTCTTCAAGAGAACATTAGACGCAGGCGGTGTAGAAACAAATGAAGTATTTTCATGTATACTCTGtcctgtaaaatatttttcgcaTATAGAATTagagaaacatttaaaaacgaGGCACTCGGTAAGATCAGACATACCAGTGGTTATTAATGTCAAGAATTGTCCTACTTGCAACCAACAATTCATTGATGGGTATTCACATGAATGTGACAAAGTATTATTCAAAAAAAgctgtaaattttgtaaaagaatTTTCCATAAATCTACTGATCTTCAAATTCATGAAAATGTTGTTAAGAAATATCACAAATGTACTATATGTGGTAAGATGTTATTGGCTGAGTGTATGGAGTTGAAACATCTATTTTCACACAGCACTGCCTACTCCATGGTTTACAAATGTACACTCTGTCCAGACTTTGTGTACTTTGTACGTGAGTTTATGATGAAGAAACACAAACTTGCATGTCACAAAGAACACAATATTGATGTCAACAATTATTTTTCTGAAATGatagTGGTACCCAAAACTCTCCTGAAAAATACACCGTTAAAGACATATctacctaaaataaaattaaaaagtaatattattgatcAGCAGGTTCAAGATAATACTAATGAAGTGAGTGAAGGTTTGGAAAAGGGACTTCTTGgtaatataaatgatatgGTTGTTAAGGAAGAAGTCGTAGAACATGTTGTGAAAGTATGTGATTTAAATAGTGATATAAAAGTTGAGGTTAAAGATGAACCTTTTGATGACattgattataatttgataaacgATAACGATTATGAAAATGATGATAAGAATGATGAAGACTTTAAGTTAATATATACTTCAAAAATCTACAGCTGCAAGAAATGTCCCTACAAAGGTACTCACAAACACTACAAGGAACACATGAAGGGGAGGTGTCGGAACTCCTTTTACACCTGCACTAAATGTAACTCAAATCATACGTCCTTGAAGGATTACTTGTGTCATTTCCAGCAACACAATTATGTTCCGCATACATGTCCTAAGTGCTTGAAGCAAGTACCAGTGATGGGGAAATTAACAACACATGTGTaccaacatataaaaaataactttgtgGGTGTGcgttatattaaagataaagcTTTTAATAACTGCTACCAGTGCAGACAGTGTCGTGTTAAGGTGGTGTCTAGTGATTTCTTTATGCATTGGGAGTCTCATATCGAGATAAAGAATCTGGTAACGAGATCAAAAACAACCGATTTAATGGAGAAAAATCCAATATTGCTGGATGTTATTGCTATGCTCCAAGACGAAAACCCAGAAATATCAAGAGAACTGCAAACAAAGCAATGTCTGATGTGTTTTAAGAATTTTTCAAGAAAGAACGATCTGAAACGACATTTAATAGAGCACCTTTTGAAAGACGCGTATGTCCATAGAGACAAGTACGAGTGTCTGAAGTGTCAGATATGTAGTGTCGGGTTCAATAAAATTGATATttacaaACGTCACATGAGAGACCACGGGTCCCTCCCTCTGTACAAATGTGAGATATGTGATAAAACATTCAGTGACTCAAGTAATTtctcaaaacataaaaaagtacaCAACCTCTCCGTCCTGATATGTGATAAATGTAAAAAGAAGTTTACATGTAAAGCATTTTTGATTAAACATATGGAGATGCACGACAAGATGACGCCGATAGTGTGCGAGTGTTGCCGGCGCGTGTTCCACTCCCCCTCCCTCTACCGCAAGCACCGCAACGGCCGCTACAGGTTCAAGTGCCCCGTCTGCATACTCACCTTCTACTCGCTCAAGGAGAAGTGGGACCACATGTGGCTGGAACACAAGGAGAGAAAATATTTGGCTGATTGTCCGATCTGCAAGAAGTCCTTCAGGAAGTACCAGGACGTGAAGATGCACATCAAGACAGTACACGACAGCAAGTACGTTTACAAACCGACATACGTCAAGATAAACAAGAATGAAGAGGTTATTGTATtGGAAACAGTTAATAATTTACCAGTAGTAGAGACGGAGGTTGGTTCACTTCGAGGATTGTATTCAGAAGATAgaagttataaaatgtttttgggaGTTCCATATGGAACCGTCGTGAAGGAAAATCCATTTGggCTGTCCATCCCTCACCCAAAGTTTGAAACTATTTTTGACGCGAATGACGATTCTAAGATAAGTCCACAAATTGaagaatttaataacaaaatatgtggTTCCCTTGACTGCCTGCGACTTAATATTTATGTCCCAAAAGAGGGAAAAGATTTAGCAGTTTTCGTTTGGATTCACGGTGGGCGGTTTGAAATCGGTTCTGGCTCCAGATTCATTCATGGCCCCAAATACTTTATGAAGCAAGAAGTTATAATGGTGACAATAAATTACAGACTTGGGCCTTATGGCTTCATGTGTTTAGACACGCCAAAGGTCCCCGGAAACCAGGGTATTCGAGACGCCTTGATGGCTCTGAGATGgatcaaaaagaatattaaatattttggtgGAAGCGACAATATCACAGTCAGCGGTCACAGCGCTGGTGCATTCATTGTCGAATTTCTGATAAAATTGAACGAAGGGCTCTTCGATAAAGCAATTTTGATGAGCGGCACGATTACAAGACCAGGTTCTATCAAACCTTGTGATAAAACACAACCTATAACCATGGCAGCGAAGTTAGGTTTCCGGACCAACGACAGTGAAGATGCTCTTCATTTTTTGACCAAATGCGATCCACATTTAGTTGTGAAGGCACATATAGATTCAGGTATCAGATTCCGTCCAACAGTAGAAAAGAAATTCCGTGACATAGAACAAATTGTCATCGACGATAATAAAAACGTtaacaagaaaattaaaataatgattgggAACTGTAGCGCTGAATccatactattattttatcacaAGACTGACGAAGAATTGAACGCATTAGATGTATttagaaaaactttaaatactgCTTTTAAATTCAATGAAGAAGAACTAAATACAGCAGAAAGGATAGTCCGGCAATTTTATGTTGGAGATGAAAAAATAGATGAAAGGGTTATGTTGAATTTAACCCAATTCTATTCAGATTTTAATTTCGTTTTTCCAGTACAGAAAACAGTTACTTCGTTCGCAGAGCAAGGGTTAgatgtatattattatgtattttcatataatggtcaaagaaattttattaaaaagaagaataaaatGGTTCATGGTGGCGCCTCTCATGCGGATGACATAGCATTCCTCTTCGATTTGTCTTTTGAAGCGGAAACAAGTATTGGTgatcaattaattattgatcAAATGACTGAAATGTGGGCTAATTTTGCAAAATATGGGAACCCGACGCCAAAACCAACTCAATTATTACCAAGAAAATGGCTACCTGTGACAGAAGATGAAATGTACTATTTAAACATAAACACTGATATAAAATGTAGAACTAAACCGAGCCACAATAGAATGGCTTTTTgggaattattttataaatactacaatgaaaatatgatataa
- Protein Sequence
- MKSSKKRTRKSKLVPRQCLDSDDENIAYMQNEIEQTIARMTSNSILKKLNRHTEEPLKFSIKVEVEEVDEPINNQIKQEETEGELNISIDSVVSLKEPNTDKNTKIKCLHEKTTSPAAILKERMIKEEFNRVSKQTTSKADKLIEIHILNWDGKYSQEIEIDDKELQLQTVIGKWKNWHKTNPKHRDIPLSYKCYICSKAWWHYYDFRQHFHTHDVAELEIESCGHECNVIAYQNEQPDYDIPLDDTCWRCGQDFSSHQIAKKGNKIYRCSGCLDRFITCMLLNEHLGNCQFFKRTLDAGGVETNEVFSCILCPVKYFSHIELEKHLKTRHSVRSDIPVVINVKNCPTCNQQFIDGYSHECDKVLFKKSCKFCKRIFHKSTDLQIHENVVKKYHKCTICGKMLLAECMELKHLFSHSTAYSMVYKCTLCPDFVYFVREFMMKKHKLACHKEHNIDVNNYFSEMIVVPKTLLKNTPLKTYLPKIKLKSNIIDQQVQDNTNEVSEGLEKGLLGNINDMVVKEEVVEHVVKVCDLNSDIKVEVKDEPFDDIDYNLINDNDYENDDKNDEDFKLIYTSKIYSCKKCPYKGTHKHYKEHMKGRCRNSFYTCTKCNSNHTSLKDYLCHFQQHNYVPHTCPKCLKQVPVMGKLTTHVYQHIKNNFVGVRYIKDKAFNNCYQCRQCRVKVVSSDFFMHWESHIEIKNLVTRSKTTDLMEKNPILLDVIAMLQDENPEISRELQTKQCLMCFKNFSRKNDLKRHLIEHLLKDAYVHRDKYECLKCQICSVGFNKIDIYKRHMRDHGSLPLYKCEICDKTFSDSSNFSKHKKVHNLSVLICDKCKKKFTCKAFLIKHMEMHDKMTPIVCECCRRVFHSPSLYRKHRNGRYRFKCPVCILTFYSLKEKWDHMWLEHKERKYLADCPICKKSFRKYQDVKMHIKTVHDSKYVYKPTYVKINKNEEVIVLETVNNLPVVETEVGSLRGLYSEDRSYKMFLGVPYGTVVKENPFGLSIPHPKFETIFDANDDSKISPQIEEFNNKICGSLDCLRLNIYVPKEGKDLAVFVWIHGGRFEIGSGSRFIHGPKYFMKQEVIMVTINYRLGPYGFMCLDTPKVPGNQGIRDALMALRWIKKNIKYFGGSDNITVSGHSAGAFIVEFLIKLNEGLFDKAILMSGTITRPGSIKPCDKTQPITMAAKLGFRTNDSEDALHFLTKCDPHLVVKAHIDSGIRFRPTVEKKFRDIEQIVIDDNKNVNKKIKIMIGNCSAESILLFYHKTDEELNALDVFRKTLNTAFKFNEEELNTAERIVRQFYVGDEKIDERVMLNLTQFYSDFNFVFPVQKTVTSFAEQGLDVYYYVFSYNGQRNFIKKKNKMVHGGASHADDIAFLFDLSFEAETSIGDQLIIDQMTEMWANFAKYGNPTPKPTQLLPRKWLPVTEDEMYYLNINTDIKCRTKPSHNRMAFWELFYKYYNENMI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -