Nina028107.1
Basic Information
- Insect
- Napeogenes inachia
- Gene Symbol
- -
- Assembly
- GCA_959347355.1
- Location
- OY365803.1:16158168-16161578[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0094 0.99 10.9 3.6 1 23 235 258 235 258 0.94 2 10 2.5e-05 0.0026 19.0 1.5 2 23 284 306 283 306 0.97 3 10 0.0008 0.085 14.2 0.6 1 23 328 350 328 350 0.97 4 10 1.3 1.4e+02 4.1 4.4 2 23 355 376 354 376 0.82 5 10 1.3 1.4e+02 4.1 0.1 1 21 380 400 380 403 0.79 6 10 0.064 6.8 8.2 3.5 2 23 410 432 409 432 0.96 7 10 0.005 0.53 11.7 0.4 2 23 440 462 439 462 0.92 8 10 0.00044 0.047 15.0 3.5 1 23 468 490 468 490 0.98 9 10 5.6e-06 0.00059 21.0 7.0 1 23 496 518 496 519 0.96 10 10 0.00017 0.018 16.3 2.0 1 23 524 546 524 547 0.96
Sequence Information
- Coding Sequence
- ATGGAATTTGGCGAGATCGTCGTCAAGGACACGCCCGGGCTTTGCCGGTGCTGTTTGTCTGAGGGATGTTATAAGGACCTGGGTACTGAATACCCTTGGATGGAAGACACAGAAGTATACGCTCATATGTTGCTAGAATGCTTTGATGTTAGTATCTCCCAACATATGGAAGGACCTAACGGCCCAAACCGGTTAATTTGTGAGGTCTGCATTACAAGGCTCCGAGATGcttgtaactttaaaaagcaggtCCTTGATTCGGAGAAGAAATTTATCGACATGGTCGGTAGGGGAGCTTTTAAGCCTAAAGTGCTAATGTATCCTGACCAAATGAAGTCTGAGACTCATGAAGTGCCGGTGGAAGAGGCTGAAATAGAGTATCTGGAGGAAGAGGTTGATTATGATGaTATACCACTTAATGAGTTAGCAGAAACATCTGTATCGGAGGACATTACAGTGGCCACTCTACCGGTAGCCGCAAAACGAGGAAGACCCAAAAAGACTGTAAAAACTGAGAAAAAGAAGAAGTTAGAGGACAAAGTCAAGCCCAAAACCTCTAAAGGTGCAAAGCCACATACGGCATCCGAGGCGGTGAATAAGTCCTTAATGTCCGCCACAAAACGGAACAGACTAATGAAACTGAACGCTATAACTGTTCTGGAATGTTCTACCGTTGTACCGTTCAAGTGGCACCGCCACAACTATCTGTGCTTCTTCTGCCATCAAACCTTTAAAACTTTAGAACCTTTAAAGGAACATACTAGAAACAACCACAAAAACTCTAACATCAAATCCGCTGTTTCATATCTTAAAAGGGACGAAAAAGTCAAAATCGATGTGTCCGGTACAAAGTGTCGCATTTGTGATGAGTGTTTTGATGACCTGGACTCTCTCATAAATCATTTAAAGACGAACCATGACAGGATATTCAGAGATGATTGTGGATTTGGACTTATTCCATACAATCTACAGGATGATAAGTATATTTGCGCAATTTGTAAGAAAGATTTCGAATATTTCATCAAACTGAATCAACACATGAACGAACATTTTGGAAATTGTGTTTGCGAACTTTGCGGTAAATCGTTCTTGAGTCAGGATCGTTTAAGATGCCACTTCCTCAGCCACGGCTCGAGATTCCAATGCAAGGTTTGTCCAGAAATATTGGATTCACTAACCCAGAAGGTTAACCACGAATCGGAAGTTCATAACAAGAAGCGTGTCATAAAATGTCATTTCTGTCCAGAAACATTCGGCAACTATATTCTCAGGAAACGTCACCACAATTCCGTTCATAATGTCGCCATGCCGGCAGTCACCTGTCCGGTCTGCGGCAAGACATTTCACATAGTTAGTAAAATGATGACCCACGTCAAAGAAGTCCACGTCAGGGAAAAAAACTTCTCGTGTGGTCTCTGCGAACAGAAATTCTTTTCTCGTTCTCACGTTCAGAAGCATATGATCAAGCATGTAGGAGAAAAAATACATCAGTGCGAGATATGTAAGAAGTCTTACGCTAGAAAGCACACTCTCAAAGACCATATGAGAATTCACCACaatgacaaaaaatatgtttgctcGGTCTGCGATCATGCGTTCGTACAaaacaagattttaaaattacatatgcGGATACATCATACTGAATGA
- Protein Sequence
- MEFGEIVVKDTPGLCRCCLSEGCYKDLGTEYPWMEDTEVYAHMLLECFDVSISQHMEGPNGPNRLICEVCITRLRDACNFKKQVLDSEKKFIDMVGRGAFKPKVLMYPDQMKSETHEVPVEEAEIEYLEEEVDYDDIPLNELAETSVSEDITVATLPVAAKRGRPKKTVKTEKKKKLEDKVKPKTSKGAKPHTASEAVNKSLMSATKRNRLMKLNAITVLECSTVVPFKWHRHNYLCFFCHQTFKTLEPLKEHTRNNHKNSNIKSAVSYLKRDEKVKIDVSGTKCRICDECFDDLDSLINHLKTNHDRIFRDDCGFGLIPYNLQDDKYICAICKKDFEYFIKLNQHMNEHFGNCVCELCGKSFLSQDRLRCHFLSHGSRFQCKVCPEILDSLTQKVNHESEVHNKKRVIKCHFCPETFGNYILRKRHHNSVHNVAMPAVTCPVCGKTFHIVSKMMTHVKEVHVREKNFSCGLCEQKFFSRSHVQKHMIKHVGEKIHQCEICKKSYARKHTLKDHMRIHHNDKKYVCSVCDHAFVQNKILKLHMRIHHTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00959703;
- 90% Identity
- iTF_00461838; iTF_01034972; iTF_00843006;
- 80% Identity
- -