Nina022144.1
Basic Information
- Insect
- Napeogenes inachia
- Gene Symbol
- -
- Assembly
- GCA_959347355.1
- Location
- OY365800.1:23396090-23402798[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.017 1.8 10.0 1.3 2 23 30 51 29 51 0.95 2 13 0.26 28 6.3 4.7 1 23 89 112 89 112 0.95 3 13 2e-05 0.0021 19.2 2.0 1 23 114 136 114 136 0.97 4 13 0.44 47 5.6 0.4 1 23 171 193 171 193 0.86 5 13 6.6 7e+02 1.9 1.1 3 19 224 240 222 242 0.91 6 13 0.0013 0.14 13.5 0.9 1 20 280 299 280 301 0.94 7 13 0.037 3.9 9.0 0.1 1 23 313 336 313 336 0.95 8 13 0.44 47 5.6 0.1 4 23 344 365 342 365 0.89 9 13 1.4 1.5e+02 4.0 1.2 3 23 372 392 372 392 0.96 10 13 0.0017 0.18 13.2 0.8 1 23 397 419 397 419 0.96 11 13 0.0005 0.054 14.8 1.0 3 23 427 447 425 447 0.96 12 13 1.4e-06 0.00015 22.9 1.6 1 23 453 475 453 475 0.97 13 13 8.3e-06 0.00088 20.5 1.9 1 23 481 504 481 504 0.98
Sequence Information
- Coding Sequence
- ATGGCTTCGCACACCCATACTCACCCTGACAGACCAAGCTGTTATATGATCCCTAAACCCACTACAATAGATATTGTTGGCGGTATATACTGTCACATATGTAATTTTACATATGCAAATAAGAGGGAGTATGATATACATTATGTTAAACATGAAACTGGCACAAAGGAAATTGTTTACACTTGTGTGGTTTGTCGCAAGGGGATTGCAGGATATCCAAGCTTCCGTGGTCATTGTTACACAAGTCATGTCATCAAAGATAGATTTAAATGCGAACactgttgtaaattattttcaaagttcACATCTTTACAGGAACATATTGTTGTCATGCATAGATTCAAATGCAACACTTGTAAAAAAGAaTTTACATCAAAAAAAGAATTGAAGCTACATGAAATCATTCACAATGACAATGATAGTCCACCATACAAGTGTCAAGCATGTAGCACTCAGATAGATACACTTGAAGGATGCAAGAATCATATTGATATGCACTCtgcatttatttacttttgccCCATTTGCAATGAAAATATATCTAACAAGGAAAATGCTCCAGAGcactttaaaaaacattttggcGATGTCATTAATACAAATACAgttgaaatacaaaaaagtttGGAAAAAGAAGAAAGTTCTATAGAACATTTGGGTggtatattttgttgttattgcTCCCTGATTTACAAAAACCGAATGGAATTTGATGCTCACTTCTCATGTGAACATGGAGACAAAGATATAGTCTATGGGTGTATTGTCTGTGGCAAGAAGGTTGAGAAATATTCAGTGTTTAGTGACCATGCTTATAATCACTTCACTAAAGACAGGTTTTGTTGCGACATATGCCTGAAGACGTTCAACCGCCTGTCCCTGCTGGTGACGCACACGTCGGCGTGTCAGGCGGACGCGCACTCGGGTGGCAAGCCCTTCGCGTGCCCGGCGTGCGGCCGCCGCTACGGCAGCGAGCTGCGACTGAGAGAGCATCTGCGACTGGCGCACGGCCGGGACAGACCAGCCTGCGCCGAGAGAGGCTGCCGGGAGGAGTTTGCCACACCAAAGGAGTTGATGTTCCACCAACGTCTTCACCGCACTAACCAGAACTGGTGTCGCCAATGCGGGCTCCTGTTCACGTCGTTAGCCTCGTGCGAGCGCCACCTCGACGTCCACAAGAAGAAGCTGTACGTCTGTCCGGTCTGCAACAAAAACTACAGCGAGAAACACCTCATACTGAAACACGTGTCCCTACATTTCGAAACCGTTTTACATCTCTGCAAGGTGTGCGGGAAGGTCTACAACGCCAAAAATCGTCTCATCGAACACATAAAGACACATTCCGAATCGAAAACGCATAGCTGTACCTACTGTGgaaaaagttttgtaaaattaggACAACTGCAACAACATCTGAACGTCCACACTGGCTCGAAGCCATATAAATGTCCGGTGTGCTCGAAATCGTTCGCCAGCTATCCCAACTGGCACAAACATCTGCGTCGAATGCACAAGAGCGACGGAAAAACATACAAAAGACCAGATCCGGAGACCGAAGAGGAATCAAACGACGTCGAGAGTATCGAAGAATTTCCCATAGACATCGACGCACGGAACTTAGTAGCGCCCAAGGAAGAACTAGCGGGCATCATGGATACTAACTCGGCGCACATGTTCCACGAACCCAACCACGGCTTCGACCCCGGCGTGGTCGAGAGGGAGCCGGATGCGCTCGGCAGCGGAGCGCCCGCCCACGTGCTGGCCGCCGCGCCCGCCCACGTGCTGGCCGCCGCGCCCGCCCACGTGCTGGCCGCCGCGCCCGCTCACGTGCCGGCCGCCGTGCCCGACCGAGTGCTGGCCGCCGTGCCCGCCGAGTACGGCCCGGAGTTCAGCGGGGTCATCGACCTCGACGACCACATGTTGCCGCACATCGACCCCCTCCTCACCATCAGCCGCCCGCCCGACTACGAACCCTTCGCCCCCAAATGGGAGCCCCTCATCACCAAGGTGTACCAGGACTACTCCTACGGCTACGGCGAGATGGAGTCCGGTCGGCTGTCCATCATCAACACGGACATATTTTGA
- Protein Sequence
- MASHTHTHPDRPSCYMIPKPTTIDIVGGIYCHICNFTYANKREYDIHYVKHETGTKEIVYTCVVCRKGIAGYPSFRGHCYTSHVIKDRFKCEHCCKLFSKFTSLQEHIVVMHRFKCNTCKKEFTSKKELKLHEIIHNDNDSPPYKCQACSTQIDTLEGCKNHIDMHSAFIYFCPICNENISNKENAPEHFKKHFGDVINTNTVEIQKSLEKEESSIEHLGGIFCCYCSLIYKNRMEFDAHFSCEHGDKDIVYGCIVCGKKVEKYSVFSDHAYNHFTKDRFCCDICLKTFNRLSLLVTHTSACQADAHSGGKPFACPACGRRYGSELRLREHLRLAHGRDRPACAERGCREEFATPKELMFHQRLHRTNQNWCRQCGLLFTSLASCERHLDVHKKKLYVCPVCNKNYSEKHLILKHVSLHFETVLHLCKVCGKVYNAKNRLIEHIKTHSESKTHSCTYCGKSFVKLGQLQQHLNVHTGSKPYKCPVCSKSFASYPNWHKHLRRMHKSDGKTYKRPDPETEEESNDVESIEEFPIDIDARNLVAPKEELAGIMDTNSAHMFHEPNHGFDPGVVEREPDALGSGAPAHVLAAAPAHVLAAAPAHVLAAAPAHVPAAVPDRVLAAVPAEYGPEFSGVIDLDDHMLPHIDPLLTISRPPDYEPFAPKWEPLITKVYQDYSYGYGEMESGRLSIINTDIF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00842998;
- 90% Identity
- iTF_01034996;
- 80% Identity
- -