Nina025221.1
Basic Information
- Insect
- Napeogenes inachia
- Gene Symbol
- -
- Assembly
- GCA_959347355.1
- Location
- OY365802.1:7703651-7710165[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 4.2e-05 0.0045 18.2 2.4 1 23 246 268 246 268 0.98 2 13 1.2 1.3e+02 4.2 5.1 1 23 276 299 276 299 0.92 3 13 0.35 37 5.9 0.8 1 23 303 326 303 326 0.93 4 13 0.00049 0.053 14.9 2.6 1 23 403 425 403 425 0.99 5 13 0.076 8.1 8.0 5.3 1 23 433 456 433 456 0.98 6 13 0.28 30 6.2 2.2 1 23 460 482 460 482 0.97 7 13 0.0001 0.011 17.0 3.4 1 23 487 510 487 510 0.98 8 13 0.072 7.7 8.1 1.2 1 23 514 537 514 537 0.89 9 13 0.084 8.9 7.9 0.2 2 19 555 572 554 575 0.92 10 13 1.3 1.3e+02 4.1 0.9 3 23 619 640 617 640 0.95 11 13 2.4e-06 0.00025 22.2 1.2 1 23 649 671 649 671 0.98 12 13 0.0021 0.22 12.9 1.7 1 23 677 699 677 699 0.96 13 13 4.5e-06 0.00048 21.3 2.6 1 23 705 728 705 728 0.98
Sequence Information
- Coding Sequence
- ATGTTTGACCTAAAGGCCTGTGTTGTGTGTTTAAAAACagatgttcaaatatttagcaTGAACACCGGACAACTGAGACAACAATTCTATCTAATAGCTGGGATAAAGacAAAATGTGAAGATGGTCTACCAGAATATTTGTGTTATCAGTGTAAAGCATATGTAAAAAGCTTCCTAAAATTTCGTGAAAAATGCCAAAGAACATATTATGTGTTGCAAGAAATTTTACGTACAAATAATGAGataaCAAAGTCCATATTAGATGAATTAGATTATAATGTTCTCAACATAAGGCCTACCCTTTCTTACATTGACCCAAGTAAGTGTAGTACCCGATatgaagatataaaatttaaatgggtGAAACAAAACCGTATATGTATAGAACCCCAGGAGAATATTCCAGTGATATTATGTAGTACtgcagaaaatatatttgatgtgTCAACACAAGCAAAATTAACTCAAGAGGatgttaaaaatgaaaaaaaatacaataatatttctgtTAACTTAACCAATAATGCTTGTGTtaagaaaaatgaaaatgattTGTTTGATAGTAATATGGATATTAGTACTAATGAGCTGGATGAGGTTCTGGAGTCTCATGAGAAACGAGTAGATGATGCTGATGGTTCTGTTTTGGATGAGGAATATGGCGAAGTTGTTGCTATCAGTTTGAAAGAGGCACAGGCTGTAGTAGAAGTGAATAAGAGGTTTGCTATTGGAAAGTTTCGTTGTGAAATCTGTGATAAAGCATactgtaatgaaaaaaatttgGATCTTCATAAAAGAATGCATGATGAGAATATCAGTGGCACACATTTCTGTTTgttgtgtaaatattattataagacagAATTCCTTTTGAAGAACCATTACAAAGACAAACACATGTACAAGTATTTATGCAGGAAGTGTCCAGAAGTAAGCTTTGACAGatattCAGCAAAAAGGCATTACATGTTAAATCACGGCCGAAAAGGTTCAAAGAATGATGTAACCATATGTGATAAAggaattaagaaaaacaaaatagttgTTGATAAGAAAAATAGAAGACAAACTGacatgtatgtattaaaaaaaaacaagaaagtaAAAGATCCGGATGATTTCCTCGTATACACACCTATAAAACAGGAGGAGCAATACACAATGGTGCTGGACAGacagaaaacaaaaaattacattGAATCACCGTACAAGTGTCAGTACTGTTTTAAGGGTTTTAGAGAAATTGTCACCTATGAGAAACATATGCAGAAACATGATCCTGTGTATTCTGGTGAGTATCAATGTGACATGTGCAAGATCTACTGTTCCAGCACTCGGAAGATGTACAAGCACATGAATACTACACATAACTTTAAATTCTCCTGTCAGATGTGCAGCTTGGTGTGCTACAGCAGAGGACAAGCAAGATCTCATTATCAATGGCACAAAAATGTCACATATTCGTGCCCGCACTGCACGAAAATATTTACGAAGCAGTCAACGAGGTTAACCCACATCCGCATCAAGCACCCGTCTACTTACATATGTAACATCTGCGGCCACAGCTACGTGAGCGAGGCCGGACTGTACTGCCATAAGAAGATCGCACACAGCGCTGAGGAGATAAAGGTGCAGGAGCAGCCGGCTCCATGCGTGTCTCTGTACTGCGGCGACTGCGACGTGCAGTTCACCAACCAGAAGGCCTTCGACACGCACTTCGGCTCCTCCAACAAACACGCCGATACTAACGTATCTACGAAGCCGTCCCGCAATAAAAAACGTCCAGGTCGTTCTCGCGGGCGACCACGTGTCGCCTCCGACGTACTTAACACGGGCGTCACCAGCGCCTCGCACTGCGAGATATGTCAACAATATCTATCGAACGACGTGCAGGCGAAGCGCCACTACGAGACGGAACACCCTGGAGCCACCTACCTCAAGAGATATATGTGTGATATCTGTGGACACACTACCAAGCAATACGCGAACCTGTTAGTACACATGCGGACACACACGCAAGAAAAGCCGTACTCGTGTCCGCACTGCCAGCGACGGTTCAGTATGGTCAGCAACAGAGACAGACATTTAGTGGTACACACTGGCGAGAAGCGCTACCAGTGCCAGCACTGCAACCGACGCTTCACACAGAGCAGTGCCGTGAAGCTTCATATTCAGACCGTACATATGAAGATACCCTACGCGCCCTGGAACAAAAAGAACCGCAAGCGACGGCAGGAGGGTCTCGCCCCCTCCCCGCCCCCCGCCACCCCCGCCGCGCCCCGCCTCGCCCCCGCCGGCACACTACCACATAAGGTGCTACTGGACACCGGGAACTACCTCAGTGCCTACATCACTTATAATGAGTAG
- Protein Sequence
- MFDLKACVVCLKTDVQIFSMNTGQLRQQFYLIAGIKTKCEDGLPEYLCYQCKAYVKSFLKFREKCQRTYYVLQEILRTNNEITKSILDELDYNVLNIRPTLSYIDPSKCSTRYEDIKFKWVKQNRICIEPQENIPVILCSTAENIFDVSTQAKLTQEDVKNEKKYNNISVNLTNNACVKKNENDLFDSNMDISTNELDEVLESHEKRVDDADGSVLDEEYGEVVAISLKEAQAVVEVNKRFAIGKFRCEICDKAYCNEKNLDLHKRMHDENISGTHFCLLCKYYYKTEFLLKNHYKDKHMYKYLCRKCPEVSFDRYSAKRHYMLNHGRKGSKNDVTICDKGIKKNKIVVDKKNRRQTDMYVLKKNKKVKDPDDFLVYTPIKQEEQYTMVLDRQKTKNYIESPYKCQYCFKGFREIVTYEKHMQKHDPVYSGEYQCDMCKIYCSSTRKMYKHMNTTHNFKFSCQMCSLVCYSRGQARSHYQWHKNVTYSCPHCTKIFTKQSTRLTHIRIKHPSTYICNICGHSYVSEAGLYCHKKIAHSAEEIKVQEQPAPCVSLYCGDCDVQFTNQKAFDTHFGSSNKHADTNVSTKPSRNKKRPGRSRGRPRVASDVLNTGVTSASHCEICQQYLSNDVQAKRHYETEHPGATYLKRYMCDICGHTTKQYANLLVHMRTHTQEKPYSCPHCQRRFSMVSNRDRHLVVHTGEKRYQCQHCNRRFTQSSAVKLHIQTVHMKIPYAPWNKKNRKRRQEGLAPSPPPATPAAPRLAPAGTLPHKVLLDTGNYLSAYITYNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00843040;
- 90% Identity
- iTF_00461859;
- 80% Identity
- -