Basic Information

Insect: Napeogenes inachia
Gene Symbol: SCRT1
Assembly: GCA_959347355.1
Location: OY365800.1:12569623-12583744[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 2.9e-07 3e-05 25.1 3.0 1 23 268 290 268 290 0.98

2 5 0.0004 0.042 15.2 0.0 2 23 300 321 299 321 0.97

3 5 1.3e-05 0.0014 19.9 0.3 1 23 325 347 325 347 0.97

4 5 7.2e-06 0.00077 20.6 0.1 1 23 353 377 353 377 0.97

5 5 0.00012 0.013 16.8 0.6 1 20 383 402 383 404 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	2.9e-07	3e-05	25.1	3.0	1	23	268	290	268	290	0.98
2	5	0.0004	0.042	15.2	0.0	2	23	300	321	299	321	0.97
3	5	1.3e-05	0.0014	19.9	0.3	1	23	325	347	325	347	0.97
4	5	7.2e-06	0.00077	20.6	0.1	1	23	353	377	353	377	0.97
5	5	0.00012	0.013	16.8	0.6	1	20	383	402	383	404	0.93

Sequence Information

Coding Sequence: ATGCCGCGCTGCTACATGGTGAAGAAAGTCCAGCGTCACTATGCATCATCTCCCTGCAGCCCCACAGAGGCCAGCGTCGCGCCGCCCTGCTACAGCCCGTCTGAAGACCCAGCGGTCACAGAACCCCAACCACCATCCATCGAATATGAGGAAATCGGAAGCACACCGATCTCTGAGCGATCGGCGGCAGAAACAGAGGCGGCGCACGACTTGTTGTCGCTTGCTCATAGTCTGCCACCGCTACCACCCGCCAACAATATGGTCGCCGTGCTACCACCTGAACCATCCGCCAATAACATGGTCGCAGTGCTGCCGTCTGAAACACCCGCCAATAACATGGGCGCCGTTCCGCCGCCTGAACCATCCGCTAACAACGTGGTTGCATCGCTGCCACCTGAACCACCAAACAACAACATGATCGCTGTACTGCCATCGGAATCACCAACCAATAACATGGTTGCCGTGCTACCACCTGAACCACCCATCCTCCCCATATATACCTACACCATTCAGCCcactaatatatacataataactgATGAATCGCCTGAACCTATCTATCAGACCATGCCGGCAATTGCACCAATGCCACAGTTCGAGTACTCTCTCGAACCTCAAGTAAGTTATCTTACTTATCAACCGTCTTACACCCCGTTACCAGATATACCTATACCGGATACACCTATCTTACCTATATTGGTTCCTGCAGCAGATATTATACCGGAACCGACACCTTGTCTGGCCATGGAACCTGAACCTGTGGTGGTCAAAACACCGGTCATTAAAGAAAAACCTACAAAATATGATTGTAACGAGTGCGGCAAGTGCTATGCCACATCCTCAAACTTATCGCGTCACAAGCAAACTCACCGTAGCCTTGATTCGGTGGAGGCAAAGCGCTGTGAAGATTGCGGCAAAGTATATGTGTCCATGCCCGCGCTTGCTATGCACGTACTGACTCACCGAATGGGTCACGTTTGTGGCGTATGCGGCAAGCTGTTTTCAAGACCGTGGCTCCTGCGCGGCCATTTACGCTCCCATACTGGGGAGAGGCCATACGATTGCCCCTATGATGGTTGCACAAGGGCATTTGGGGATCGCTCTAATTTGCGTGCACATCTCCAAACCCATTCCGGTGACAAGAAATTTGAGTGTTCGAAGTGTCAGAAAACCTTCGCCCTCAAGAGTTACTTGGCAAAACATGAAGAGACGGTATGTTTTCGGGATGAGATTATGTGTGATCCAGAATTTGTGCAACCTTTATCACCTTCTGCACGGTTTCAAAAGCCGTGCGATCCGTTCAATCCATGTAAAAAGTACAAGTCGTGCAAGCTGTCTGAGACGTCATGTGTACGGCCTGAGAAAGAGAGTGTACAGCCTGCGCCAGAGAATATCCATCGTCTTCCAAAGGGTATTACCAGTGAAGCAGAGAATATTCAATCGGAATGTATTCAGCCCGAGCCAGAAATAATACAGTTTAAGTCAGCATGTTCACAGTTTGATGTGGAGTGTACCCAGTTTGAAACAGAGTGTCTTCGGCCTGAGCCAGCCATGATACGGTTTAAGCCAACGGGCACACAGAAAGAGATGGAGTCACCTGAATCACCGGAGAGTATGGTACATGAGTCAGATGATATTCGACCACAGCCAGCAGTTATACATTTCGATCCGTCTCGTGCACTGCCTGTGCCAAAAATTATACGATATGATCAGATTGTGCTGCCCGATTTGGACTAA
Protein Sequence: MPRCYMVKKVQRHYASSPCSPTEASVAPPCYSPSEDPAVTEPQPPSIEYEEIGSTPISERSAAETEAAHDLLSLAHSLPPLPPANNMVAVLPPEPSANNMVAVLPSETPANNMGAVPPPEPSANNVVASLPPEPPNNNMIAVLPSESPTNNMVAVLPPEPPILPIYTYTIQPTNIYIITDESPEPIYQTMPAIAPMPQFEYSLEPQVSYLTYQPSYTPLPDIPIPDTPILPILVPAADIIPEPTPCLAMEPEPVVVKTPVIKEKPTKYDCNECGKCYATSSNLSRHKQTHRSLDSVEAKRCEDCGKVYVSMPALAMHVLTHRMGHVCGVCGKLFSRPWLLRGHLRSHTGERPYDCPYDGCTRAFGDRSNLRAHLQTHSGDKKFECSKCQKTFALKSYLAKHEETVCFRDEIMCDPEFVQPLSPSARFQKPCDPFNPCKKYKSCKLSETSCVRPEKESVQPAPENIHRLPKGITSEAENIQSECIQPEPEIIQFKSACSQFDVECTQFETECLRPEPAMIRFKPTGTQKEMESPESPESMVHESDDIRPQPAVIHFDPSRALPVPKIIRYDQIVLPDLD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00842971;
90% Identity: iTF_01034936;
80% Identity: -