Nina017239.1
Basic Information
- Insect
- Napeogenes inachia
- Gene Symbol
- X-element\ORF2
- Assembly
- GCA_959347355.1
- Location
- OY365798.1:11901757-11910672[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.048 5.1 8.6 0.1 2 23 265 286 265 286 0.95 2 11 0.16 17 7.0 0.5 5 23 294 314 291 314 0.89 3 11 0.0015 0.16 13.3 2.3 2 23 1051 1073 1050 1073 0.94 4 11 0.0031 0.33 12.4 0.3 1 23 1079 1101 1079 1101 0.97 5 11 0.019 2.1 9.9 0.2 1 23 1110 1133 1110 1133 0.92 6 11 4.3e-05 0.0046 18.2 3.2 1 23 1138 1160 1138 1160 0.98 7 11 8.5e-06 0.0009 20.4 1.0 1 23 1166 1188 1166 1188 0.97 8 11 0.00017 0.018 16.3 4.9 1 23 1194 1216 1194 1216 0.98 9 11 3.9e-07 4.1e-05 24.6 0.3 1 23 1222 1244 1222 1244 0.98 10 11 0.0027 0.28 12.6 3.8 1 23 1250 1272 1250 1272 0.98 11 11 1.3 1.4e+02 4.1 0.1 1 22 1277 1298 1277 1298 0.91
Sequence Information
- Coding Sequence
- ATGGAAGTGTTTCTTTATAATTCTACAGTGTGTAGATTATGTGGTGAAGAAAATGATAATGGgacattattatattcatgtgaAGAAAATAACCAAAGCTTATGTGAAATAATAAACGCCTATTTGCCAATAAAGGTATCTGATGATGGTGAACTACCACGAACTATTTGTCCTGGATGTACCATTCAGCTCGAAGCCACTGtcgagtttttaaatttaattataagtggACAGaaaattttaagaGAACTGTACCAACgagaaaaagaatataaaaagagTGTTCTCAGCAGTTCTAATAAACAAGTTCCTGAAGTTAtatcagaaaaaataatttatgaaataaaCACTAGCAATGGAGTGTATCAAGTTGAGCATCCCATATCGTTACAAGTCAGTGGTCTTGATAAACCCAAACGCAAGCGGGGCCGCCCCCCTAAGAAACAAAAGAGTCCTGAAGAACTTGCCCAGGAAACTGAAAAGCCTAAAGCAGAAGCAAGATATGAGAAGGAGGATGAAGAAAGATCAGGAAAAAGAAGGCGGAAGACACCTACTAGATTTAGAGAGGCTGTTCAgggTAAAGAATTAGAAAGAATATTTATAGAAGAAGGAGTTATAGATGATGCTGAGAGTGACCAAAATTCAAAGGCTGATATGACCCAAGAAAATAAGCTACCAGTAAATAAAGAACCACAGGTCATAGGACACTTGGAGGCATCTGGAGAGCTTGTTGTAGTTGTCAAGGGAAAGGGGAGAGGAAGACCTAAAGGTCGAATGCGGCAAAGGCGAGAAGAGTGTGCTATTTGTGGCATGGAGTTTTCTTCAACTGGTCGCTACATGTCGCACATCGCACAACACGGGCCGGTACTGTACAAGTGCGACTGTGGAGAGGCTTTTACTACTAAGCTCCTATTCTCCGAGCATCAGAAGTCCAGTGAACATACAGGTCGGACAATTGTGCCTTACCGGAATGATGTTGAATTGTCAAAAAATATGtcagttattaaagaaacaaaatttgAAATCACTCCAGAAAATTCATGTGATAGATTGGATCAGACAAACGGTCTACAAATTTCCCAAGCATTGCCGGATTTAAGTGATATTGACCCATTAAAGGTTGATGAGAATGAGATAAGCATTGTAAAGAATGAAGAAGTGGTAAAACTCAGTGACAACGATGGAAATGATCAGGAAAACAATGACCACACACCAGTACTACTTACTCTAAGCACAAACATCATAGAGTTTGCTCGACCATTGACACTCAGCAATAGACGCACTGATTGGAATTCATTCAGACAACATattgatgaaaatataaaaatgaaagtgGCTCTGAAAACCCCAGAAGACCTAGACAACGCAACCAAATATATCACATCACTGATACAAGAAGCTTGTTGGCTAAGCACTCCAGAAATAAGCGGTACATTTAGAGAGACAAACTACcctatgaaaataaaaacttcagTACTTGAGAAACGTCGAATGCGAAGATTGTGGCAACAAAGCAGACTATCGGAGGATAAAACTAATTTCAACAAGGCAGCAGCAGAGTTGAAAAAGATGCTCCAAAAATGGCATGATGACACTCTGCAAACGGAACTGGAATCTCTAAGCGCAACCAAAGCAACAAACTATTCACTATGGAAGGTAACCAACAACTACAATAGACCGATCATTGCCAAACCACCATTACGAACATCATACGGCTGGGCAAGATCCGCACAGGAGAAAGCAGACATATTTGCGGAGCACCTATCAAAAGTATTTTCGCCAAATGACTCCGAAGATAAGACGTTTGAAGCTCATGTTGATAGCATACTTAACCAGGAACTACAGATGGATCAACCACCTAAACCGGTGACGGCTAGAGAAGTGTGGAAGGTAGCAACAGAGTTGAAAGAAAGGAAAGCTCCAGGTTTTGACCTCATCACCAAGGAAGTGATAAAACAACTGCCGAGAAAAGCTGTAACCTTCCTAACAACTCTATATAATGGCATATTGAGAGTCCAATACTTCCCTCAGATATGGAAAGTATCCCAAATAATTCTTATACACAAAGAAGGCAAACCTCCGACTGAAGTTAGCTCCTATAGACCAATAAGCCTGCTCCCCACTCTATCAAAGATCTTCGAAAAACTCCTTCTTCACCGAATACTTCCTATACTTGAAAGTAACAATGTAATACCTCATCATCAATTTGGATTTAGACATCAACATTCAACCGTAGAACAAGTGCATAGAGTCTATGACAAAATCAGAAAAAGCCTGGAGGAAAAAGAATACTGTTCTGCGGTATTCCTAGATATTCAGCAGGCTTTTGACAAAGTTTGGCACAAGGggttattgtacaaaataaaaacaaatcttcCACATACCTACTTTTTGCTCTTCAAGTCATACCTTGCTGAACGTGTGTTCCAGGTCAAAGAAGGAGAAACAATGTCAAGATTTTATGATATTCACGCTAGTGTTCCACAAGGCTCAGTTTTAGGTCCACTCCTGTATACGATCTTCACAGCTGACCTGCCTGGCACAAAGGATGTCACAATCGCAACCTTCGCGGATGATACTGCCATCCTGGCAAGCAGTAAAGATCCCGGGGTAGCATCAGTAATCCTCCAAAAAGGTCTAGATGATACAACTACATGGTTGCAAAATTGGCGAATTAAACCCAGTGCAACAAAATCGGCTCACGTTACATTCACATTGCGAAAAGGTAATTGCCCACAAGTCAAGCTAGAAAACCACACCCTACCACAACGTGACAGCATCCGGTATCTTGGACTTTACCTGGACCGTCGTCTAACATGGaagGCAATCTTAAAACCGGTTTGGACATATGGACTTCAGCTGTGGGGTAGTGCTACAGATTCTAATATATCATGCCTGCAAAGAATGCAAAATATGATCCTTCGAAAAATCAGCAATGTGCCTTGGTGTGTCACAAATGCCGAAATACACAAACACTTGGAAAAGACAACCATTAAAGAAGAAATCAAGCAAATTAGACTACAATATAAGGAGAGGCTAGACAAGCACCCTAACACCCTCGCACAACAACTGACTATACCTTCGGTGGAGGTGGGCGACAACTTAACGGACAACGAGGAACTCCACAACACAAAgggaaaagttaaaataaagtgCAACCACTGCGACAAAATGTTCAGCAACAGACAGAGCAAGTCCCTTCACATAAAGGCGGTGCACCTCGGCGAGAAGGCGTACGCATGCGTGGAGTGCGGTGCGAGGTTCGCGTACCCGCGCTCGCTGGCACTGCACCGACACAAGCACCGCCGCGCCGCAGCGCACCACGGGTACGCCTGCGACCTCTGCGGGAAGGTGCTGAACCACCCGTCATCCGTGGTGTACCATAAGCAGGCTGAGCACGCGGCCCAGCGCTACGTGTGCGGCGCCTGCGGAAAACACTTCAGGCACAAGCAGCTGCTGCAGCGCCACCAGCTCGTGCACTCGCAGGCGCGACCGTTCACGTGCAAGGTCTGCAACGCGACGTTCAAGACCAAGGCGAACCTCCTCAATCATCAACTTTTACATTCCGGTGTCAAGAAGTTCTCGTGCGAAATATGCAAGCACAAGTTCGCCCACAAGACCAGCCTCACCCTACACATGCGATGGCACACCGGAGTGAAGCCGTTCACGTGCGGGGTCTGCGGCAAGAGCTTCAGTCAGAAGGGCAACCTGTCGGAGCACGAGCGCATCCACACGGGCGAGAAGCCGTATCAGTGCTCGCTGTGCCCGCGCCGCTTCACCACGTCCTCGCAGCACCGTCTGCATGCCAGGCGACACTACGAGCGCGCGCACGCCTGCGGCCGCTGCGGGAAGCGCATGTCCTCACGCAGCGTGTGGGCGGCCCACGTGCGGCGCGACGACTGTCTGCCGAGACGACACACCAGGCATAAGGTCCACAAACAAATCAGCCTGCTCGTGAACGACAAGAACCAGCAACAGTTACAAATAGAAGATACCAAGCTCTCCGAAGACGAGACGACGGAAGAGAGGGTAATATACGTCGCCTATGACACGGAGGATTCCAACTCTCCCGCGTTTCATATATTGGATCCGGAGCGGACGGTAGATATAGAAGATAACAAAGTAGTAACCACATGTGAGCTATACACCAGACCGTCCCTGTTAGTTCCACAACCATTGCAACACCTTCAGCTGGAGCCGGTCTCGGAGTGCCCTCAGCTTGAGGACGAGGCGCTGGAGATACAAGACCAGGTGCTGGAATTGGATGATGAACAGGTTAAACTAGAAAATCAATTGGACCTCGTACAGGAGGAGATCCAGGAGATTGAAGAGGAAGAAACCGAGCAGGTGATCGGTGGACAGAGTATACCTGTGACAGACGAGCGAGGCAACCCCCTGCACTTCACGATGGCAGACGGAACTAAGTTGGCCATCACCTCCATTGACGGGAAGTCACTACAgGTGATAACGCAAGATGGACAGACTATACCCGTGGAGATAAATGGATATGACGATGAAGAGgaTTCGTCCGGGAGCAACACTGTAGTTCATCAACTGAACCTACAGAAGACTGTGGAATCAACCAGTACCACTCCAGTCACCCACTACTTCACTATTGTCTGA
- Protein Sequence
- MEVFLYNSTVCRLCGEENDNGTLLYSCEENNQSLCEIINAYLPIKVSDDGELPRTICPGCTIQLEATVEFLNLIISGQKILRELYQREKEYKKSVLSSSNKQVPEVISEKIIYEINTSNGVYQVEHPISLQVSGLDKPKRKRGRPPKKQKSPEELAQETEKPKAEARYEKEDEERSGKRRRKTPTRFREAVQGKELERIFIEEGVIDDAESDQNSKADMTQENKLPVNKEPQVIGHLEASGELVVVVKGKGRGRPKGRMRQRREECAICGMEFSSTGRYMSHIAQHGPVLYKCDCGEAFTTKLLFSEHQKSSEHTGRTIVPYRNDVELSKNMSVIKETKFEITPENSCDRLDQTNGLQISQALPDLSDIDPLKVDENEISIVKNEEVVKLSDNDGNDQENNDHTPVLLTLSTNIIEFARPLTLSNRRTDWNSFRQHIDENIKMKVALKTPEDLDNATKYITSLIQEACWLSTPEISGTFRETNYPMKIKTSVLEKRRMRRLWQQSRLSEDKTNFNKAAAELKKMLQKWHDDTLQTELESLSATKATNYSLWKVTNNYNRPIIAKPPLRTSYGWARSAQEKADIFAEHLSKVFSPNDSEDKTFEAHVDSILNQELQMDQPPKPVTAREVWKVATELKERKAPGFDLITKEVIKQLPRKAVTFLTTLYNGILRVQYFPQIWKVSQIILIHKEGKPPTEVSSYRPISLLPTLSKIFEKLLLHRILPILESNNVIPHHQFGFRHQHSTVEQVHRVYDKIRKSLEEKEYCSAVFLDIQQAFDKVWHKGLLYKIKTNLPHTYFLLFKSYLAERVFQVKEGETMSRFYDIHASVPQGSVLGPLLYTIFTADLPGTKDVTIATFADDTAILASSKDPGVASVILQKGLDDTTTWLQNWRIKPSATKSAHVTFTLRKGNCPQVKLENHTLPQRDSIRYLGLYLDRRLTWKAILKPVWTYGLQLWGSATDSNISCLQRMQNMILRKISNVPWCVTNAEIHKHLEKTTIKEEIKQIRLQYKERLDKHPNTLAQQLTIPSVEVGDNLTDNEELHNTKGKVKIKCNHCDKMFSNRQSKSLHIKAVHLGEKAYACVECGARFAYPRSLALHRHKHRRAAAHHGYACDLCGKVLNHPSSVVYHKQAEHAAQRYVCGACGKHFRHKQLLQRHQLVHSQARPFTCKVCNATFKTKANLLNHQLLHSGVKKFSCEICKHKFAHKTSLTLHMRWHTGVKPFTCGVCGKSFSQKGNLSEHERIHTGEKPYQCSLCPRRFTTSSQHRLHARRHYERAHACGRCGKRMSSRSVWAAHVRRDDCLPRRHTRHKVHKQISLLVNDKNQQQLQIEDTKLSEDETTEERVIYVAYDTEDSNSPAFHILDPERTVDIEDNKVVTTCELYTRPSLLVPQPLQHLQLEPVSECPQLEDEALEIQDQVLELDDEQVKLENQLDLVQEEIQEIEEEETEQVIGGQSIPVTDERGNPLHFTMADGTKLAITSIDGKSLQVITQDGQTIPVEINGYDDEEDSSGSNTVVHQLNLQKTVESTSTTPVTHYFTIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -