Nina018009.2
Basic Information
- Insect
- Napeogenes inachia
- Gene Symbol
- -
- Assembly
- GCA_959347355.1
- Location
- OY365798.1:22665996-22674327[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.95 1e+02 4.5 0.0 1 23 189 211 189 211 0.94 2 15 0.034 3.6 9.1 1.6 1 23 218 240 218 240 0.97 3 15 0.22 23 6.5 0.1 1 23 244 267 244 267 0.97 4 15 1.3e-05 0.0014 19.8 2.1 1 23 272 295 272 295 0.91 5 15 0.0029 0.3 12.5 2.2 2 23 302 323 301 323 0.96 6 15 1.2e-06 0.00013 23.1 2.5 3 23 337 357 336 357 0.98 7 15 0.00029 0.031 15.6 3.0 3 23 365 385 364 386 0.94 8 15 0.0002 0.021 16.1 0.2 2 23 411 433 410 433 0.96 9 15 0.0093 0.99 10.9 0.6 1 23 440 463 440 463 0.95 10 15 0.048 5.1 8.6 0.0 6 22 473 489 472 491 0.88 11 15 0.22 23 6.6 0.1 2 13 501 512 500 516 0.85 12 15 0.32 35 6.0 0.2 2 11 546 555 545 559 0.86 13 15 0.22 23 6.6 0.1 2 13 624 635 623 639 0.85 14 15 3.7e-05 0.004 18.4 0.4 2 23 669 690 668 690 0.96 15 15 3.8e-06 0.0004 21.5 1.1 1 23 695 718 695 718 0.97
Sequence Information
- Coding Sequence
- ATGTcagacatacagataaaatTAGAGTTACAGGAAGAAGATGAGCCTGTAGAAGTGGAAGTgagtttaaaaatagaacatgaAGATGAAAGCCAGTCATACATAAGCAATAGTCCACAACAAAATGTAATGGAAGACAATTTTGTAGCAATAAAACAAGAAGTGGAAGAAAGTATAGATGTTAAAGTAGAAAGTATAGAAATCAAAGCAAACACATGTGGCCAGAGTCCAGATTTAATaaagaagaatattttaaaaccagaACTGTTATATTTTGACAGTGaaCCTGAGGACCTCTCTGTAAGAAAAACTAGACACTATTACTCTGAAGATGAAGACACAGAAAAAAATTCACAAGACTCGGACTATGAATATCTTCCagaacaaactaaaaaaaaaaAGAAGGAACCGAACATAAAGCCTACATTTAATGgaaaaagtaaaaATGACAGAGACCAAAAGTACTCAGAAGAGATAACAAAACACATAGAGATAGTGACAATAGACGAAGAGGCTCGAAAGCTGGAACACCACGAGCTGCTGCTCAGCCGCCTGCACATGAACTACACCTGCGAGCCCTGCGCCCTCGGGTTCGTCATCGAGGAGGCCTACACGATGCACATGAGAATACACTCCccaGAGAACGGCGACCACGAGTGCAGCATATGCAAGTCCCGCGTGAAGACTCCGGACGTGCTGTACCGGCACCGCCTGCGCCACTACCGGCGCTACCGCTGTGCGCTGTGCCGCCTGCAGCTGAGAGACAAGGACACCGTGGCGGCGCACGTCATGAGGGAGCACCTCGGGAGCGCCTTCCTCTGCAAGCACTGCGGACGACCCTTCAAACGGCCCCAGTACCTGAAGCGCCACGTGGAGCAGATGCACACTCGGCCGCAGCACCTGGAGTGCCCCCACTGCGGACGAGTGTTCTACGAGCGGGGCTGGTACAGGTGCCACGTGAGAACACACAACGAACAAGTGAAGCGCAGAGCGGACAAGAAGGCGATATGTTCCCACTGCGGCCGTGAGTTCCGGAACAAGTCGTACCTCGTGAGACATCTACAGACGCACGAGGAGCGCCGGCCTGCGCCCTGCCGCCGCTGCGGGAGGACCTTCAAGAACCAGGAGGTCCTGAGGGTGCATCGTCGCCAGCATCACAGCAACAATCCCTCCAGgtaTAGCATCGACAACAACGGCTTCAAGGGAGTCCTACCGTCAGGTCAGAACACGACGTGCGAGCAGTGCGGACGCGTGCTCACGACGCGCGCGATGCTGGCCAGACACGTCAACCGCATGCACACCGACCGGACCAAGAAATACCAGTGCGACTACTGCAAGCGACTCTACTTCTCGAAGGCGGAGGTACGCTCACATATCGAGTGGTCGCACCTGCAGCAGCGGCGCCACGCCTGCGCGTGCGGACGCGTGTTCCGCACGCCGGCACGACTGCGGGCGCACGCGGCGGCCGTGCACCTGCGCCTGCAGCCGCCCAGGGACAAGACCTGCAGCGTCTGCGGGAAGATGTTCGCGGGACAAGACCTGCAGCGTCTGCGGGAAGATGTTCGCGGTGAGTGTGAGTCGCGTGTTCCTCACGCGGCGGCCGTGCACCTGCGCCTGCAGCCGCCCAGGGACAAGACCTGCAGCGTCTGCGGGAAGATGTTCGCGGTGAGTGTGAGTCGAGTGTTCCTCACGCGGCGGCCGTGCACCTGCGCCTGCAGCCGCCCAGGGACAAGACCTGCAGCGTCTGCGGGAAGATCCGCCCAGGGACAAGACCTGCAGCGTCTGCGGGAAGATGTTCGCGGTGAGTGTGAGTCGCGTGTTCCTCACGCGGCGGCCGTGCACCTGCGCCTGCAGCCGCCCAGGGACAAGACCTGCAGCGTCTGCGGGAAGATGTTCGCGGGACAAGACCTGCAGCGTCTGCGGGAAGATGTTCGCGGTGAGTGTGAGTCGAGTGTTCCTCACGCGGCGGCCGTGCACCTGCGCCTGCAGCCGCCCAGGGACAAGACCTGCAGCGTCTGCGGGAAGATGTTCGCGAACCAGCAAGTTCTGACCCGACACGTAAAGGGCCATTCGGGAGAGACCTACCCCTGTACGGAATGCGGTCAATCATTCAAGACGCAATCTTACGTCAAAattcattacaaaataaaacatctcaACATGACACGAGCGGAAATAAAAGCACAGAGTAAGAGAAAACTCATCATGCTGGAGAACGTAGGAGAGATTATGAACgcgaaaataaagaaaaagaagaaaccAAATAAGAAGAAGGATCCCCTGAACATCGAGGGACAAGTGACTGTTAAAAAGGAATCTCCCGATATCTCTGTGCCATTGTTTGAAACTTTTGTGGATATTCAGCGAGAGTATTAG
- Protein Sequence
- MSDIQIKLELQEEDEPVEVEVSLKIEHEDESQSYISNSPQQNVMEDNFVAIKQEVEESIDVKVESIEIKANTCGQSPDLIKKNILKPELLYFDSEPEDLSVRKTRHYYSEDEDTEKNSQDSDYEYLPEQTKKKKKEPNIKPTFNGKSKNDRDQKYSEEITKHIEIVTIDEEARKLEHHELLLSRLHMNYTCEPCALGFVIEEAYTMHMRIHSPENGDHECSICKSRVKTPDVLYRHRLRHYRRYRCALCRLQLRDKDTVAAHVMREHLGSAFLCKHCGRPFKRPQYLKRHVEQMHTRPQHLECPHCGRVFYERGWYRCHVRTHNEQVKRRADKKAICSHCGREFRNKSYLVRHLQTHEERRPAPCRRCGRTFKNQEVLRVHRRQHHSNNPSRYSIDNNGFKGVLPSGQNTTCEQCGRVLTTRAMLARHVNRMHTDRTKKYQCDYCKRLYFSKAEVRSHIEWSHLQQRRHACACGRVFRTPARLRAHAAAVHLRLQPPRDKTCSVCGKMFAGQDLQRLREDVRGECESRVPHAAAVHLRLQPPRDKTCSVCGKMFAVSVSRVFLTRRPCTCACSRPGTRPAASAGRSAQGQDLQRLREDVRGECESRVPHAAAVHLRLQPPRDKTCSVCGKMFAGQDLQRLREDVRGECESSVPHAAAVHLRLQPPRDKTCSVCGKMFANQQVLTRHVKGHSGETYPCTECGQSFKTQSYVKIHYKIKHLNMTRAEIKAQSKRKLIMLENVGEIMNAKIKKKKKPNKKKDPLNIEGQVTVKKESPDISVPLFETFVDIQREY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -