Basic Information

Insect: Myzus persicae
Gene Symbol: Znf541
Assembly: GCA_001856785.1
Location: NW:216249-480173[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.00036 0.028 14.6 0.2 3 23 194 214 192 214 0.92

2 6 3e-07 2.4e-05 24.3 1.5 1 23 220 242 220 242 0.99

3 6 0.00012 0.0096 16.1 3.2 1 23 248 272 248 273 0.95

4 6 0.00031 0.024 14.8 0.8 2 23 518 539 517 539 0.97

5 6 0.0022 0.17 12.1 0.2 1 23 1307 1331 1307 1331 0.97

6 6 7.7e-05 0.006 16.7 0.8 1 23 1354 1376 1354 1376 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.00036	0.028	14.6	0.2	3	23	194	214	192	214	0.92
2	6	3e-07	2.4e-05	24.3	1.5	1	23	220	242	220	242	0.99
3	6	0.00012	0.0096	16.1	3.2	1	23	248	272	248	273	0.95
4	6	0.00031	0.024	14.8	0.8	2	23	518	539	517	539	0.97
5	6	0.0022	0.17	12.1	0.2	1	23	1307	1331	1307	1331	0.97
6	6	7.7e-05	0.006	16.7	0.8	1	23	1354	1376	1354	1376	0.98

Sequence Information

Coding Sequence: ATGACGGCTGTAAATACTGGGTTGCCTGGGATCCGGGTGCCGTTGAAGAGCAGCTATGCGTCGGCCATGCCCCAGCAGACGGCGGTGTTCATGTACAGCACCGCTGGTCCGGACGGACAGACTGTCACCCTACAGCTCCGCGAGACGGACGAGACCATCGAGCTGCCCGCGTCCATGCTGTCCAAGATGTCCCGACAAACGGACACGGCCACGCTGTCCATCAGCTACCAGGACTCGGCGGAGGTGCTCACCGACGGCACCATCGACCTGCTTCTGGCCACCACGCCACTCCACTCTTCCGGTGATGGTCAAAGCACAGATTCACCCGGTTTCGAGCTCTTCGATTCGGACAACGGCCACGATCTCACGCTATCACCACAAACTTTTACGGCGAATACCACAGCTGAGTCTTTTCTGGTCAACGACAACTCAAACAGCATAGGCATGCCCGTCAATGAGTCCGACACAGTTGGCAGCTCGGAAGACGTTAAGTCAGCAGATTTGAGCAAGTTAAATATGTCGAGGCGGTCAAAACCGGTGGCGAAAGCTATGTCTCCCAACAGACAGGGTCCCCAGCAGtgtattACCTGCGGGAAAGTGTTTGGGAACGCGTCTGCACTGGCCAAACACAAGTTGACACACAGCGACGAACGGAAGTACGTGTGCAACGTTTGCAGCAAAGCTTTCAAAAGACAAGACCACTTGAACGGACACATGCTGACGCACCGGCACAAAAAACCGTTCGAGTGCAAGGCCAGCGGATGCGGCAAGTCGTACTGCGACGCGCGGTCGCTGCGCCGGCACACGGAGAACCATCACCACCACCGGCCGTCGTCCAATCAGGGCTCGCCACCCGCGTCGCCGTCCTCGTCCACGAGTTCCGGTTGCATACAGTACGCGCCCGCGCCCATGCCGTCGCCGCCCGGCTCGTCCGCGGCCACCACGTCCACCACGGTGGCCGCCGGAGCGCCgacttcgtcgtcgtcgtccgcgTCGTCCGCGTCGTCCTCGTCGTCATCGTCCGCGTCCACCACGGTGGCGTTCGGATCCATGTCGGCCATTTCGGTGTCGACGTCCGCGTCCGCCGCGTCGTCTTCTTCGCCGTCGATGTCGTCGtccacgtcgtcgtcgtcgtcgtcgtccacgACGTCCTCGTCCGTCGCGCCGCACCACCAACAGCAGCAGCCGCACGACGCGACGCCCAGTCAGCTGCAAAAGCTGCTCAGCGCCGAACCGCTGTCATCGACCGGCGGCGGAGGAGGAGCACTCCCGTCAAAGAGTGGCCAATCGGAAACGAGAAATGCGGCAGACAGCGAAGACAGTTTTACTAAACAGCAGTTTGACATTATTCAACAGATTATGCATCACACCCAACAGCAAATAGCGACGTCGACTGTCTCGAAAAATTCGAACCTCAAGAATTCGACAAACGCAAAAAATTGGAACAGTCAACAGACCTCGAACGGCGCAACAGACTCGGCAAACAACAAACAACAGCACTCGCAGCCCGCTGCCGTTGCAGTGCAACCCAAGCCGGAACAAAAGCCCGTGGAATGTAACCTGTGccatcgaaaatttaaaaacgtaccGGCTCTAAATGGACACATGAGGCTGCACGGAGGATACTTCAAAAAGGAAACTGATTCAAAAAAATGGGAGAAAAAAGAAGCATCGGGTCCACCCCTGCAGACTGCCAGCATGAGTGTCAGGGCTTTGATCGAagaaaaaatcatacaaaaaagaACCACGAAACCAAATTGTTCAACTCAAAACGGACTAACATATTCaaGCATGAACCGAGAGAAGGAAACGGTGGTACAGCAAGTGGTGAGCAGAAGCACGGCGGTACACGCGGTTATGACCACCAGCGGTACGTCGTTCGCGGTACCAGCGGTGCCAAACAACGCCTCGCTGGTGGACACGACAGTGGGCTTGGCCGACTCCACGGCCGTAGTGTACACGGACGTGATACTCAAAAAGACCGGCGTGAAGAGGGCGTGCTCGGATCCCGGATACCAGTTCAATCACAGCAGCACCACCAGCCCGcaaatagatattaattacTCCGGTTCGCCGTACACACTGAATCAAGGAAACGGTGGAGGCGGTGGAGGCGGTGGAGGcggcggaggcggcggcggcggcggcgaaaagGAAACCGATAACCGGGGCTATTATTCGCCGGGGCTCAACGACGATATATTTCCCAACGTACAAGCCGAAACCATGCTCCTGCAGGCCGTCGACTCCGTGCAGCTGGCCAACACGATACAGgctaCGGACATGCAAGACATGTCATGTTTAGATGATTATGATGGTATGACCGATCTTCAAAACAACGAAGATTTCCAAGCTGTGTTAAATTCTCCACTCTCGGCCAGCTTGGCTGATCTCGCTTACAGTTCAGGACAAACCATGTTTACAGATTTAGGTAGATCACCTCTTCCATCCCCAAGTTTTACCTACCCTACTCCACCGGCTAGTCAAGAGGGTCAATCTCCTTCGCTAAATTTTCATTCGGTTATGTCAAACGGTCACCTTGGTGACTTTTTTTATTCATCCGACATGTCAAGTTCAGAAGCTGTTGAAGCTGCGTTAAGTGAAGTTTTGCCAAATTTCGAGTCCTCTACGGATTCACCGTTATCAGCTAATACACCAGTGTCATCGCCGATGTCAATCCATAATTCATCCGCTGCACAGTCACCATTACCAAACCACCATCAACACACACTACAggtaatgATGCCAAATTCAGAAGACCCGTTATTATCCAGCAATCCTAAAGAATTTAGGAAGAAATTCGATTACCAAACATGTCGCTTATATGGGGTCAATGGAACCATGGCTCAAGTAATCGATGGCAGTCAGTTTTTAATCGACAAAAATGGAGATTTGAAATTAGTCCAAGCAAGTTACCAAAATCCTGGAACAATGTTCGTCCAAACAGAAGCCCAGTTGATCGAAAAACATATACCAGTTATCAAACAACAAAAACCAGACAATAACCAGAACTTTGAAGATATAGATGACATTTTCCTTAATCCATCAAGtattcctCCTAATATTACAAATCGATTAAACAGAAAACGCTGTTTTGGAGAAACTATTACGTACAAACCGTTCCGATCCAGATTACGTAGTCATAGACTCGGGATGTTAAATGAACCAACCTTGCAATTTACTCCGAAACCAATGTTGAGTCCTTCTAGAAATGGAAGAGGTCTTTATTGGCAAGCAGTGACTTCGTGGCCAAGCTCTTCAACTGTCAAagagGTTATTGTTGAAGACTGTGTAGGACTAGATTCACCACCAGAGTGTGATGTACTGCCACACATTAATCTTGGTCCAAATTTCCAAGCTTTAATACCACCATTAAGCAAAATCAGACCAATTCGAGAGCCGTCTAATGATTACTTATTATGGGACCCTTGTATTACAAGTTCAGTTTCTGATCGAGAAGTTGAAATGTACATGGACTTTGCATGCTGCGCCGCAGTGCCAGGTGGTGGAAGAAACAAAGAATATGCTTTACATTTGCTACATCTTTGCAAAGGAAACGTTCAAGAAGCAATGTTAAAGTTGATGCAACCAACGCCTTATCTCCCACAAGGACATCCTTTGATGAAATTTGAATACACGGAATCTGATCACTGGACACCAAATGAAGTATCTATGTTTCACAAAGCTATATTCAAATATGACAAAGATTTCGCATTTATATCGAAAGAGttgggCACGAAGACTATGAAACAATGcatacagttttattatttgtggaAAAAAGTTTGCCCGGAAGATTATAAACAGTTTCAATTCCAAAGACGAAAGTCGAGGAATGAAGATGCAATGGTCAATCCGAAAATAGACATTCCTGCTAACGACCTTATGGTCACCACCAGTTCGGAGGACCAACAAACTTTCGTTTGCGAATTCTCAGACTGTTTGTCGACATTCAGTAACAAAATAGGATTAGCAGCTCATATGAGGCTACACACTAACGGAACACCAGATCGAAGGCAAACCCTGACACCAACACAAATTGATCCGAATTATGAAGAATTCCCTTGCAAGATCTGTGGAAAGATATTTACCAAAGTGAAGAGTCGAAGTGCCCATATGAAATCGCACCGACCTCCTGACGCGGAACCAAAGAAACCAAAATTGGACCAAAATGTCGACTACGGTCAAATGATGCAACTCAAGACGGTCGCAACGCCAATTCAATTGCATAGACAATGCTAA
Protein Sequence: MTAVNTGLPGIRVPLKSSYASAMPQQTAVFMYSTAGPDGQTVTLQLRETDETIELPASMLSKMSRQTDTATLSISYQDSAEVLTDGTIDLLLATTPLHSSGDGQSTDSPGFELFDSDNGHDLTLSPQTFTANTTAESFLVNDNSNSIGMPVNESDTVGSSEDVKSADLSKLNMSRRSKPVAKAMSPNRQGPQQCITCGKVFGNASALAKHKLTHSDERKYVCNVCSKAFKRQDHLNGHMLTHRHKKPFECKASGCGKSYCDARSLRRHTENHHHHRPSSNQGSPPASPSSSTSSGCIQYAPAPMPSPPGSSAATTSTTVAAGAPTSSSSSASSASSSSSSSASTTVAFGSMSAISVSTSASAASSSSPSMSSSTSSSSSSSTTSSSVAPHHQQQQPHDATPSQLQKLLSAEPLSSTGGGGGALPSKSGQSETRNAADSEDSFTKQQFDIIQQIMHHTQQQIATSTVSKNSNLKNSTNAKNWNSQQTSNGATDSANNKQQHSQPAAVAVQPKPEQKPVECNLCHRKFKNVPALNGHMRLHGGYFKKETDSKKWEKKEASGPPLQTASMSVRALIEEKIIQKRTTKPNCSTQNGLTYSSMNREKETVVQQVVSRSTAVHAVMTTSGTSFAVPAVPNNASLVDTTVGLADSTAVVYTDVILKKTGVKRACSDPGYQFNHSSTTSPQIDINYSGSPYTLNQGNGGGGGGGGGGGGGGGGGEKETDNRGYYSPGLNDDIFPNVQAETMLLQAVDSVQLANTIQATDMQDMSCLDDYDGMTDLQNNEDFQAVLNSPLSASLADLAYSSGQTMFTDLGRSPLPSPSFTYPTPPASQEGQSPSLNFHSVMSNGHLGDFFYSSDMSSSEAVEAALSEVLPNFESSTDSPLSANTPVSSPMSIHNSSAAQSPLPNHHQHTLQVMMPNSEDPLLSSNPKEFRKKFDYQTCRLYGVNGTMAQVIDGSQFLIDKNGDLKLVQASYQNPGTMFVQTEAQLIEKHIPVIKQQKPDNNQNFEDIDDIFLNPSSIPPNITNRLNRKRCFGETITYKPFRSRLRSHRLGMLNEPTLQFTPKPMLSPSRNGRGLYWQAVTSWPSSSTVKEVIVEDCVGLDSPPECDVLPHINLGPNFQALIPPLSKIRPIREPSNDYLLWDPCITSSVSDREVEMYMDFACCAAVPGGGRNKEYALHLLHLCKGNVQEAMLKLMQPTPYLPQGHPLMKFEYTESDHWTPNEVSMFHKAIFKYDKDFAFISKELGTKTMKQCIQFYYLWKKVCPEDYKQFQFQRRKSRNEDAMVNPKIDIPANDLMVTTSSEDQQTFVCEFSDCLSTFSNKIGLAAHMRLHTNGTPDRRQTLTPTQIDPNYEEFPCKICGKIFTKVKSRSAHMKSHRPPDAEPKKPKLDQNVDYGQMMQLKTVATPIQLHRQC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00463580;
90% Identity: iTF_00463580;
80% Identity: iTF_01032830;