Basic Information

Insect: Myzus persicae
Gene Symbol: -
Assembly: GCA_001856785.1
Location: NW:29041-37635[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0002 0.016 15.4 2.1 1 23 214 236 214 236 0.98

2 10 0.0031 0.24 11.7 0.7 1 23 332 355 332 355 0.94

3 10 0.05 3.9 7.9 3.8 1 23 361 383 361 383 0.99

4 10 0.00017 0.013 15.7 0.1 1 23 390 412 390 412 0.95

5 10 0.057 4.4 7.7 3.9 1 23 555 577 555 577 0.96

6 10 1.6e-05 0.0012 18.9 10.5 1 23 583 606 583 606 0.97

7 10 5.6e-06 0.00044 20.3 1.3 1 23 615 638 615 638 0.97

8 10 2.3e-06 0.00018 21.5 1.8 1 21 643 663 643 665 0.94

9 10 0.011 0.85 9.9 2.1 1 23 707 729 707 729 0.98

10 10 0.0001 0.0079 16.3 3.2 1 23 734 757 734 757 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0002	0.016	15.4	2.1	1	23	214	236	214	236	0.98
2	10	0.0031	0.24	11.7	0.7	1	23	332	355	332	355	0.94
3	10	0.05	3.9	7.9	3.8	1	23	361	383	361	383	0.99
4	10	0.00017	0.013	15.7	0.1	1	23	390	412	390	412	0.95
5	10	0.057	4.4	7.7	3.9	1	23	555	577	555	577	0.96
6	10	1.6e-05	0.0012	18.9	10.5	1	23	583	606	583	606	0.97
7	10	5.6e-06	0.00044	20.3	1.3	1	23	615	638	615	638	0.97
8	10	2.3e-06	0.00018	21.5	1.8	1	21	643	663	643	665	0.94
9	10	0.011	0.85	9.9	2.1	1	23	707	729	707	729	0.98
10	10	0.0001	0.0079	16.3	3.2	1	23	734	757	734	757	0.97

Sequence Information

Coding Sequence: atgaCGGAGGTCAACTATCGGTACATAGCGTTTGAAAATGATCACACGTAtttgaaaactaataattttagcgatgacaattttcaattattgcaGACCAGCATTTCTACAATTGATGAacccGAAAATGATGGAACTGTGTCATCAAAAACTTCACCTACtagaaaacaacaaattaaagcttgtaaaaataaaactaatccaataaaaattaatatggatCTACAAAAATcaacatcattttattttcataacactTTACATTTTCCATTATCTACAGACTTTAAGATatcacaaaatacattacctattcaaaaaatgattactGGTAGCAGTTCAAGTGCAAGGCCTATACAACCAAAAGTATCAAATACTTCAAATATTGTTCCTGTTACACAAACACAATCAAATGCACTACTTATTCcatcacaaattaattttttaaaaacaaaattacaaaatataacATCCGAAAATACACTTGTGAAACCTACATTGCCACTGATACCACAGTTGAAACCTTTTATTAAGCCtattaagtcaataaaaaacaaaattgtttatgattataaaaacaatacatgcACAATTGAATTAGCTACAAATTTATGTCAGCGCTTATTGAGTGGAGAAAATATGTTCATGTGTAAGAAATGTGATAAAGTTTACACAGAACATAGAGATTTGTTGGATCATTATATGATTCATGGTAAATGTGAAACAAACCCAATAGTTCAAGAGAAAGATAAAAGAGAGAACATACCAATCACTAATGTAAAGAAAGAAAACAGAAATGttagtaaaacaattattaatagtgATAAAAATGTTGCCAAACAAACTATACCAGTTATTAAATCTACattaaactctaaaaaaaataaagttgtttttCAAGGAGAGTGCATTATGTGTCATTCAGTATTTCCTGATCTTGGAGAACATATAAGAACTGTTCACCAAAATGACTTAgctaaaaataaagttaatacattttgttgtacAACATGTGGAATAGAGTTTGATATTAAACAACAACTACGTGCTCATGAGTTATCTGCGCATAAATCTGCTAACGTATATACTTGTGAACATTGTCTTAAACTCTTCTCGTGTAAAGAAGACTTAGATACACATATTGAAACACATTATAGTGACATTATGAAGTATTTATGTCCATATTGTGATGCTGGTTTTCCTAATTCAAATGGATTAAGAACTCATCTCATTAATCATATTGGTTACGATAGTCCTGAATACTCAACTTCAGAAACACCAGTCTATCAAATTGAATATAGCCCAACAAGACCACCTGAAAAACTTGATCAGTTAATTTCTGAATTAGATAATGTTCCAGAAGATATCGATGATGTTTATATAGAACAAGTTGATGACGATAATTATCAAGTCAGTTTTAGAAAGGGTGATGAAGATAATGCATCATCACAAATAAACTTGCTTATTGACGATAAGCATGAAGTTGATACAGAACTAAACAAttCAACTTcagaagataataaaaaaattatcattaatgaaCACCAAAcatcattgttaaataaaaagcGAATAAGTTATACAGTGTGTAGAATATGCATGATTATTGTAAGTTATTCAAGAATTGGTAGACATATGaagaaaaaacacaataatgcTGCTCCCTACCAATGTGAAATATGTCACGCTGAGTTTAATCGAAAGCACATCATGGATGACCATAGAAgaaaacacacaaataataaacctcacaagtgcACAGAATGTTCTAAATGTTTTACCTACAAACACCACCTAAATCGGCACATGATGATAGTTCACAATTCTGGCACATTAGAAAAACTATTCAAATGTTCTGTATGTGATAAAGCATTTTCATTTAAGGAGTATTTGACACTACATGTAAAtaGCCGCCATAAGGGTAAACATTATATGTGCCAAGTTTGTGGAAAAAGTTTTTCTACCAATGCTGCATTGAATAAACACCAGTTGTGTCATACAGACGAACGACCATTCATGTGTGAACATTGTGGACggacatttaaatgtaaaactcATTGTGAcactcacaaaaaaaatatgcatccTGGGGATCCACAACTAACAGCCCCACCAGAAAAATTTGAATGTGAACTTTGTAAAAAACTATTTAGCACAAAAGTATACCGCGATATGCACCTTAAGCGACATAATGGTCAAGGTCATCAATGTGATATATGCTATAAACTGTTTGTTTCCAAGGCACACATGCAAaggcatattaaaataatgcatcGAAATACATTGTGA
Protein Sequence: MTEVNYRYIAFENDHTYLKTNNFSDDNFQLLQTSISTIDEPENDGTVSSKTSPTRKQQIKACKNKTNPIKINMDLQKSTSFYFHNTLHFPLSTDFKISQNTLPIQKMITGSSSSARPIQPKVSNTSNIVPVTQTQSNALLIPSQINFLKTKLQNITSENTLVKPTLPLIPQLKPFIKPIKSIKNKIVYDYKNNTCTIELATNLCQRLLSGENMFMCKKCDKVYTEHRDLLDHYMIHGKCETNPIVQEKDKRENIPITNVKKENRNVSKTIINSDKNVAKQTIPVIKSTLNSKKNKVVFQGECIMCHSVFPDLGEHIRTVHQNDLAKNKVNTFCCTTCGIEFDIKQQLRAHELSAHKSANVYTCEHCLKLFSCKEDLDTHIETHYSDIMKYLCPYCDAGFPNSNGLRTHLINHIGYDSPEYSTSETPVYQIEYSPTRPPEKLDQLISELDNVPEDIDDVYIEQVDDDNYQVSFRKGDEDNASSQINLLIDDKHEVDTELNNSTSEDNKKIIINEHQTSLLNKKRISYTVCRICMIIVSYSRIGRHMKKKHNNAAPYQCEICHAEFNRKHIMDDHRRKHTNNKPHKCTECSKCFTYKHHLNRHMMIVHNSGTLEKLFKCSVCDKAFSFKEYLTLHVNSRHKGKHYMCQVCGKSFSTNAALNKHQLCHTDERPFMCEHCGRTFKCKTHCDTHKKNMHPGDPQLTAPPEKFECELCKKLFSTKVYRDMHLKRHNGQGHQCDICYKLFVSKAHMQRHIKIMHRNTL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00463569;
90% Identity: -
80% Identity: -