Basic Information

Insect: Myzus persicae
Gene Symbol: -
Assembly: GCA_001856785.1
Location: NW:439217-449202[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.015 1.2 9.5 0.1 3 22 171 190 169 190 0.93

2 14 0.0008 0.063 13.5 1.0 2 21 284 303 283 304 0.94

3 14 0.0059 0.46 10.8 6.4 1 23 311 333 311 333 0.93

4 14 0.0036 0.28 11.4 5.6 2 23 336 357 335 357 0.96

5 14 0.31 24 5.4 3.0 1 23 390 413 390 413 0.83

6 14 0.00028 0.022 14.9 1.4 1 23 444 466 444 466 0.94

7 14 1.2e-05 0.00095 19.2 2.1 1 23 472 494 472 494 0.99

8 14 0.01 0.79 10.0 0.2 1 21 500 520 500 520 0.96

9 14 0.001 0.078 13.2 1.6 1 23 525 547 525 547 0.95

10 14 1.8e-05 0.0014 18.7 5.1 1 23 578 600 578 600 0.99

11 14 0.68 53 4.3 1.1 2 21 614 633 613 634 0.89

12 14 1.4e-05 0.0011 19.0 2.2 2 23 637 659 636 659 0.95

13 14 0.081 6.3 7.2 2.8 1 23 666 688 666 688 0.96

14 14 0.0022 0.17 12.1 0.4 1 23 712 735 712 735 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.015	1.2	9.5	0.1	3	22	171	190	169	190	0.93
2	14	0.0008	0.063	13.5	1.0	2	21	284	303	283	304	0.94
3	14	0.0059	0.46	10.8	6.4	1	23	311	333	311	333	0.93
4	14	0.0036	0.28	11.4	5.6	2	23	336	357	335	357	0.96
5	14	0.31	24	5.4	3.0	1	23	390	413	390	413	0.83
6	14	0.00028	0.022	14.9	1.4	1	23	444	466	444	466	0.94
7	14	1.2e-05	0.00095	19.2	2.1	1	23	472	494	472	494	0.99
8	14	0.01	0.79	10.0	0.2	1	21	500	520	500	520	0.96
9	14	0.001	0.078	13.2	1.6	1	23	525	547	525	547	0.95
10	14	1.8e-05	0.0014	18.7	5.1	1	23	578	600	578	600	0.99
11	14	0.68	53	4.3	1.1	2	21	614	633	613	634	0.89
12	14	1.4e-05	0.0011	19.0	2.2	2	23	637	659	636	659	0.95
13	14	0.081	6.3	7.2	2.8	1	23	666	688	666	688	0.96
14	14	0.0022	0.17	12.1	0.4	1	23	712	735	712	735	0.92

Sequence Information

Coding Sequence: ATGCTGAGTTCTACACATAACAACGTTGATACTGGAAAATGGCAAGAAATTGTATTGAATGAAATCCATTCTGACCATGAaaaTTGTTCAGACAATGAACTACCTCTTTCATCAATAGTCACtactaataaaattgataccAAAAAATGGCAAGATATTATATTGGATAATATTCAATCTAACATggaaaatgactcagaaaataatttgtctCTATTATCAATACCCATGATTAATGATGATCTTACAAATACAAAACATCAAGATATTAATTTGGGTGATATTCAATCTGACATTGAAAAttactcAGATAATGAACTACCTCTTTCATCAATAGCAAATGTATTGCCTCCAATCGATAGTTGTAATGTcttaaaaagtcaaaaaaatataaaatctgatTCAATCAGTTTCCAATCCAAGACAAAcattaaccataatatatctGACTCAAGTCACATATCCATCAAAGAACAAAGTAAAATAGATACGCCAATGAAAAAGTATGGATGTGATGTTTGTGGGAAAATATTCCATAGGCGTGTTGAGATTATTGAACACTTTAGAACCAGTTTATGCTTTCCAGAAAGTCCTTCTAATCTTGAACTCAACAGCCCTACTTATAATTGCAATTCTGAAAATCCAATATTATGcttcaaaaaaataagttgtttaaaaattaataatacagaaGATATGATCAAGTGCAGAATTTGTCAAAATGTAATCAGAAATGACGATGTTATATTACAgcgtcaaatattttatactaacttGTGTAATATATGTTCGGTGagaaatagtattatatgtgCAAATACTCGCCACCTTAAAGAAGAGTATACATGGAAATGTAAAACTTGTGGTCAGTCATTTACTTCATTGTCTGGAATAAAAGAACACATATGCTTTTTTCCAAAGAATAAACTGTTCAATTGTTATAAATGTCATAAATCCTATAAAAACTTGAATTCTcttgaaaaacataaaactttTCATTCATTGCATTgcaatatatgttttaaagaaTTCTTTAAACAGTCATCTTTAAGATATCATAAAAAAAGACACTATTTAAGAAGTAGCTACCAATACAATAATCGTTTAGAGTTCTTAGATTATAGTGGGTTGAAGCTTACTAAAAGAATCCTCAGTTCATCTCAAAATTATGAATGTTCAAGATGTTCAAAAGTATTTCATAAACGTTcagaaataatatgtcatattctGGAAAATCATCAACTTGAATATTCCAAATATAGCTGTGATGAATGTACAAATGTATGTGATTCTTCACAGgactatattttatgttttagaaaaaagtatttcaaatgtGATGTGTGTCCCCTATCATTCACTACAGAGCATAGACTGCAACAGCATTATGGATGGCATCttggtataaataaatttaaatgtgaatTCTGTCCTAAGACATTTACAAATTTATCTCTTTATTTATCCCATGAAAAAACTCACACTGTAGAAAGACCGTTCAGGTGTAGTTTTTGTGGTCAATGGTTTCCAGAgacatcaaatttaaatattcatataaaaccCTTCAAgcattttgtatgtaatatttgtcaaaaatcGTATACTCAGATGTCATCATTattattccataaaaaaattcatgctaaaaaaaaatgtcgagtaAATAAGAGCTGTAATCAACTGTCAACTATGGAAATACATTCAAGACGACCAAGTACTAGAAGCAAACATTTTAAGTGTAATGTATGTGCGAAATCATTCTTTCATTCTTATTCATTAAGAACTCATCTAAAAACTCATCAAAAACACAAGAGACCACAAAAAAATTCTATGCGCATTAAATGTGATTTATgccaaaaactattttatgacAAGAATATTTTACTCGCTCATAGATGTAAGTCATTGACATGTACTTattgtctaaaaatatttaacaatagttCTTCACTTAAAAGACActacaaaaatatgcataaaaaaaataataaactctttGACTGTGATATCTGTAAAATATCCTTTATGTGTTCAACTAGTCTTAATGAACATAGAAAAAATCACACTCAGTTTGAAAATAACACACCTCTTAAATTGAATGTCAACAacgatataaatacaataaatgaagAATTTAGATGTGATCTTTGTATGAAAAGTTTTGATAATCAATCACAAATATTTGCTCATATTGTGGAAACTCATTATTAG
Protein Sequence: MLSSTHNNVDTGKWQEIVLNEIHSDHENCSDNELPLSSIVTTNKIDTKKWQDIILDNIQSNMENDSENNLSLLSIPMINDDLTNTKHQDINLGDIQSDIENYSDNELPLSSIANVLPPIDSCNVLKSQKNIKSDSISFQSKTNINHNISDSSHISIKEQSKIDTPMKKYGCDVCGKIFHRRVEIIEHFRTSLCFPESPSNLELNSPTYNCNSENPILCFKKISCLKINNTEDMIKCRICQNVIRNDDVILQRQIFYTNLCNICSVRNSIICANTRHLKEEYTWKCKTCGQSFTSLSGIKEHICFFPKNKLFNCYKCHKSYKNLNSLEKHKTFHSLHCNICFKEFFKQSSLRYHKKRHYLRSSYQYNNRLEFLDYSGLKLTKRILSSSQNYECSRCSKVFHKRSEIICHILENHQLEYSKYSCDECTNVCDSSQDYILCFRKKYFKCDVCPLSFTTEHRLQQHYGWHLGINKFKCEFCPKTFTNLSLYLSHEKTHTVERPFRCSFCGQWFPETSNLNIHIKPFKHFVCNICQKSYTQMSSLLFHKKIHAKKKCRVNKSCNQLSTMEIHSRRPSTRSKHFKCNVCAKSFFHSYSLRTHLKTHQKHKRPQKNSMRIKCDLCQKLFYDKNILLAHRCKSLTCTYCLKIFNNSSSLKRHYKNMHKKNNKLFDCDICKISFMCSTSLNEHRKNHTQFENNTPLKLNVNNDINTINEEFRCDLCMKSFDNQSQIFAHIVETHY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -