Mper001698.1
Basic Information
- Insect
- Myzus persicae
- Gene Symbol
- -
- Assembly
- GCA_001856785.1
- Location
- NW:519384-529118[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 2e-05 0.0016 18.5 1.1 1 23 107 129 107 129 0.96 2 23 0.00013 0.01 16.0 5.2 2 23 139 160 138 161 0.95 3 23 0.0027 0.21 11.8 3.3 1 23 209 231 209 231 0.99 4 23 7.9 6.1e+02 0.9 0.1 10 23 244 258 236 258 0.73 5 23 0.72 56 4.2 7.1 1 20 263 282 263 291 0.93 6 23 0.011 0.89 9.9 0.3 2 20 306 324 305 326 0.94 7 23 0.0011 0.085 13.1 3.7 1 23 331 353 331 353 0.98 8 23 0.038 3 8.2 1.7 1 23 915 937 911 937 0.88 9 23 6.4e-06 0.0005 20.1 0.8 1 23 1008 1030 1008 1030 0.97 10 23 0.0025 0.19 12.0 2.2 1 23 1036 1058 1036 1058 0.98 11 23 0.0095 0.74 10.1 4.5 3 23 1114 1135 1113 1135 0.96 12 23 0.00029 0.023 14.9 2.4 2 23 1195 1216 1194 1216 0.96 13 23 1.1 83 3.7 7.2 1 23 1221 1243 1221 1243 0.94 14 23 7.9e-05 0.0062 16.7 0.3 1 23 1300 1322 1300 1322 0.98 15 23 0.0021 0.16 12.2 1.8 1 23 1328 1350 1328 1350 0.98 16 23 0.0038 0.3 11.4 1.0 2 21 1386 1405 1385 1406 0.94 17 23 0.00012 0.0095 16.1 1.9 1 23 1436 1459 1436 1459 0.97 18 23 8.7e-05 0.0068 16.5 0.1 2 23 1502 1524 1501 1524 0.95 19 23 0.025 1.9 8.8 5.4 2 23 1532 1554 1531 1554 0.95 20 23 0.0011 0.084 13.1 0.9 1 23 1586 1608 1586 1608 0.97 21 23 0.00034 0.026 14.7 0.2 1 23 1613 1636 1613 1636 0.95 22 23 0.00056 0.044 14.0 0.5 2 23 1670 1691 1669 1691 0.97 23 23 0.0011 0.082 13.1 2.0 1 22 1697 1718 1697 1718 0.94
Sequence Information
- Coding Sequence
- ATGGTTCCAATGAAAGACTACAAAAAAGTTAAAGTCACTGGTGATTCTGATGCTGTTACCAGtgaatTACATGTTGAAAACACTATTGTAAATCCTGCATGGTATACAGTTGAAGATGATCATGTGTCTTTGGTATCTGAAAATGTTGAGAAAGTTATTAAGCTTGAAACTGATATGTTGGATGATTGTATGTGGGAAAGTAGAATCGAAATTACCAAAGATGTTTCAAACCAAAATAATGTGGAGTTACCCTTGGAATGTCAGgatGTCccggataataatatttacttaaatcatGGAAATGcaagtgataaaatatttcattgtaatatttgtGGAAAAagctttgttttaaattatcttttgaaAAATCACTTGGCCGAACACAAAAGACAAGTAAATCgtaatactaataaatgtaaattttgtgGAAAACGGTTTAAGTTAAAGTTTGGTTTGAATAGACACATTCAAAAACATCACAATTCCATGCATAAATCTAAGTATAGATCTAAGTTTACTGAACACAAAAATAGCCATGAAAAGGATCAAACTAACTTTGATACTATTccgaatataaaattatgtaaattaaacgGTGTTTGGGAAAGTaaaacaattgaatttaaatgcaACGTTTGTTTCCAAAAATGCTACAGTGAAAAGAATTTGGTCGAACATATGGAAACTCATGACAATTCTCAAATCCAATGTAATTATTGCTTAGATTATGTTTCAGTTTCTGAATTGAATAATCATATGGAAAATATTCataatgaacatttatttaaatgtcagAAGTGTaaccaacaatttaaaaaacaacaacatttgAATTGTCATTTAATTCATTGCTTAAGAAGTTCTCGTACAAAATCGATTAAAGTCTGTGGTGAATTCAGAGCTAATGAAAAAACTTGCACTGCTTGtggaattacatttaataattctatatcaTTGACAAATCATACGACTTTTGGTTGTAAGCATTACACTTGTAAATATTGTGGACAATTCTTTAGTAAAAGAAATGTTTGGCTTAAACATATGCATGTTCACAAAAAAGTTACTCAAAATGCATTGTTGAAAGCAAGTACTGATGAAACATCTACAATAAGAGGATATAATCAAACTGAGGTTGTAAATGATTCTTCTTTTAATACAAACGGAAGACAATTATTATCCAGAGATGTTACAGGAAGAAATAGTTCAGATCATACCAGTTTAGTGAACAGTAATTCAACAGTTGTATCGACTGCTCCACATACCTATATTCCGAACAATGACATAATTTCAAATTCAGAGCCAACTGAAACCTTATCGAATAGCTtggaaaaaaatagttcaaatcaATTACATACAGTATCTGATGAATCAACAATTAATACAGTTCCTCCTGTGACTCCTCCTGTCCGTGTAATACTGAGGCTCAGAACTCCAAATTCACAGCCAACTGAAACCTTATCGAATAGCTTGGAAAGAAATAGTTCAAATCAATTACGTACAGTATCTGATGAATCTACAATTAATACAGTTTCTCATGTGACTCCTCCTGTCCGTGCAATACCGAGGCCCATTATAATTAATCGAACTCCGGATACAACTGATGATTTAACCCGACTAGTGGACAGCGAATATTTTCCAACGCCCGTTCCGATGCACGTTCTCCAAGagagaattttaaatatgaagcAAGAAAGATTCTTTCATAACACAGTCAGGGAACATTTTCAGCGCCAGATAAACATACGGCAAGCTCAAATAAACAGAGAGCGATCAGGTCTATCGCTTAGTGCATATTATGATTCATTAATAGCCCCCGAAAGCcctattatagattttaatgcTCTTAATCTAGCTCTCAGGGGAAGAAATAGTTATAATCAAACTAATTTAGCCAACAGAAATCAATCAATGGCATCGGCTGCTTCACGTAACTCAATCTCAAACAATAATAGccctgttataaatattaagcaaGAAAACAACTTAAGTACAAATTCCAGGGGAACAAATAGTTCAGATCAAACTAATTTTGCCAACAGAAATGAATCAATTGTATCGGCTTCTTCACATAACTCAATGGCAAACAACAATAGcactgttataaatattaagcaaGAAAAAAACTTGAGTACAAATGCCAGAGAAAGGAACAGTTCAGATCAAGTGGACCCAGTGAACAGCAATGAATCAATTGTATTGGCTGCTTCACATAACTCAATAGCAAACAGCAATAGccctgttattaatattaagcaaGAAAAAAACTTGAGTACAAATGCCAGAGAAAGGAACAGTTCAGATCAAGTGGACCCAGTGAACAGCAATGAATCAATGCCATCGGCTGCTTCACATAACTCAATCTCAAACAATAATAGccctgttataaatattaagcaaGAAAACAACTTGAGTACAAATTCCAGAGAAAGGAACCATTCAGATCAAGTGGATTCAGTAAACAGCAATGAATCAACTTTGGTAAATCAACCTCATGATTTTATGGCAAAACAAAACCCTACTaatatagctaataataatattgcatctACAGTTAGAGAAACACCTTATATCTGCATTAGAAAATtgcctaatattaaaaatagatttcgCAACAATGATTATGATCAGACATCACAAgacaatgttatatttatatgtagaatttgtaaaaattctcCATCTACAGATATACATTCATTTGCATTACACATGAGTGATCACAGTGAGTGTAATATGCATGAATGTATTGTGTGTGATAAAACATTTAACTCTGTAGTTCTTTGGACAAACCACATGACCTATCATCAACAGCAAATAGATTTAAATGTGCCAACAGTTCAGTTAAATCCTCTAGAAATTGAGTCTAATACATTAGAAGACCCTATTAATTCTGAAAACATGGAACCTCAAGTTCGTACAATCTTAAGAAATAGAAAATTGAAGTTATCTTTAACAGATGATTCGTATTCAGATACTACATCAAGGTTAAAAAGTGccaaaaaaatgaaatgcaaATATGACTGTAGTACATGTAAAAAAGTATTTCCTTCCAAGAGCTCATTAAAAATTCATCTTACTGTTCATAATAAACCAAAATCATTTTCCTGtaggtattgtaataaaatattttctggaaAAGGTCAACGTACAAATCATGAAAAATCCCACATCATCCCAGACAAacagttattacaaaataatgagAATATTAAACTTGAACCAATTTTAATCCAAAACAGCATAAGTATTGAAGATAACAACACGACTGATTTTGAGACTATGTcaataaaacattcaaaaataaataaatcatcaattaagaaaaaaaatttctgtaatttatgtaataagaAATTTCCTAAGCGTTGTTACTTTACAAATCATATGATAATAAAGCATAATTTAAATCCAAACACACCAAGACAACTTCCATCGATTGATTGTAACGAACCAATCATTCAGTCTGAAAACATTGagttaactaataattataagaacaaATTATCAGTTccagtaaataacaaaaataacaatttgaataACTGTGTCAATAACAGCAATGAGAAGAAATCAACAGTTTGTATGTCTTGCAACAAACATTTTGCACATCTCGGTGCCTTGACCAATCACATGcgtgttcattattatttaccatacaAATGTCAATATTGCTTCAAGCAATTCAGTAAGAAACGTTCTCATATTATGcatgaaaaaaaacatgtattaaaaaatgtagttataagTGCAAccagtcaaaataaaaacaatatagttattGAGGTTAATGATGAACCACAAGTTGAACATTGTAATGATTCTGAGTTTGTTCATACTCAAGTTGATGACAATTCAACCGGTACACATTTTATGGACATAGAACATTTATGGTTTTCCTGTGATGTGTGTGAGGAAAAATTCTCTACTCCATTGCAATTGAATGTTCACCGAAATTCACATCCTGGAATTGTACCATTTGTATGTAAGATTTGTAATAGATCTTTTCAGTTTAAATTTCGATGGAATTGGCATTTAAAAGTCCACTACCAAAAAcacaattcaaattcaaaaagtaagcaacaaacaaataatttaaaatcaagcATTAGTAAACTAAAGGTTGAATCTATACATCATACAGATAAAATGAAATGTCGATATTGCAAAAAAGAATATAACTCTATATCTCAGTGGAAGAAACATATGACAATGAGCAAAGAATGCCGTCGCCATTGTAAAAGTAACCTTCCAGAGTTTACGTCAAATAAAACTACAAAGAATTCTTCCAAATTTGGTCGATACAGATGTAATATATGTGAGAAAACATATAGTACCACTTCCAatagaaatatacataaaagAAATGTTCATAATGTGTTAGATACAACCAATTTGATTACCGATGATACCGTTTTACAAAAAGACAAACCAATGGACATAATTCAACAAAAACTTGCAATTAAGAAACGAAATAGAGGTAATCACACTAATGGCACTAAATGTGGATTATGTGGTAAAATATACAGTAATGTAGGTAATTTAAGTCGCCACATATCCATAATACACACTAAAACTTTTGAACCTATAACATGTAATGTTTGTGGAAGTAcatttaaacacaaattttcTTAccatgaacatttaaaaaataaacataaacaattatttaaacattatgtagAAACAAACccgacaaataaaaaaactggcGGGCAAATTAtggaagtaaataaaaaaaatattatgaaatacttttgcaaaatatgtaaaatgaagTTTGCTGACAATATTACTTTACAAGaacattcaaaaatacatacgttaaatatgtatatgtgtaaaGACTGTGGTCAGCAGTTTGAGACAAATGTTACTCTAGGTAATCATATTTTGGAAAACCACAAATCCAATATTTCTACATCTACTATAAACGAACATGTTGAGAATTATGAGAGCCAAAATGCTGCTCCagaattaattgattataaacgTAAACGTGTTCAGTGTAAACTTTGCTTGAAAGTCTTAAACACTCCAAAATATTTGAGATTGCACATGAGATTACACACTGGTGTCAAGCcattcaaatgtattaaatgtaaccAGGCTTTTAGATTTAAATCAAACCTAAGAGTCCATCAGAAAAAAGATACTTGTTGTATcccttaa
- Protein Sequence
- MVPMKDYKKVKVTGDSDAVTSELHVENTIVNPAWYTVEDDHVSLVSENVEKVIKLETDMLDDCMWESRIEITKDVSNQNNVELPLECQDVPDNNIYLNHGNASDKIFHCNICGKSFVLNYLLKNHLAEHKRQVNRNTNKCKFCGKRFKLKFGLNRHIQKHHNSMHKSKYRSKFTEHKNSHEKDQTNFDTIPNIKLCKLNGVWESKTIEFKCNVCFQKCYSEKNLVEHMETHDNSQIQCNYCLDYVSVSELNNHMENIHNEHLFKCQKCNQQFKKQQHLNCHLIHCLRSSRTKSIKVCGEFRANEKTCTACGITFNNSISLTNHTTFGCKHYTCKYCGQFFSKRNVWLKHMHVHKKVTQNALLKASTDETSTIRGYNQTEVVNDSSFNTNGRQLLSRDVTGRNSSDHTSLVNSNSTVVSTAPHTYIPNNDIISNSEPTETLSNSLEKNSSNQLHTVSDESTINTVPPVTPPVRVILRLRTPNSQPTETLSNSLERNSSNQLRTVSDESTINTVSHVTPPVRAIPRPIIINRTPDTTDDLTRLVDSEYFPTPVPMHVLQERILNMKQERFFHNTVREHFQRQINIRQAQINRERSGLSLSAYYDSLIAPESPIIDFNALNLALRGRNSYNQTNLANRNQSMASAASRNSISNNNSPVINIKQENNLSTNSRGTNSSDQTNFANRNESIVSASSHNSMANNNSTVINIKQEKNLSTNARERNSSDQVDPVNSNESIVLAASHNSIANSNSPVINIKQEKNLSTNARERNSSDQVDPVNSNESMPSAASHNSISNNNSPVINIKQENNLSTNSRERNHSDQVDSVNSNESTLVNQPHDFMAKQNPTNIANNNIASTVRETPYICIRKLPNIKNRFRNNDYDQTSQDNVIFICRICKNSPSTDIHSFALHMSDHSECNMHECIVCDKTFNSVVLWTNHMTYHQQQIDLNVPTVQLNPLEIESNTLEDPINSENMEPQVRTILRNRKLKLSLTDDSYSDTTSRLKSAKKMKCKYDCSTCKKVFPSKSSLKIHLTVHNKPKSFSCRYCNKIFSGKGQRTNHEKSHIIPDKQLLQNNENIKLEPILIQNSISIEDNNTTDFETMSIKHSKINKSSIKKKNFCNLCNKKFPKRCYFTNHMIIKHNLNPNTPRQLPSIDCNEPIIQSENIELTNNYKNKLSVPVNNKNNNLNNCVNNSNEKKSTVCMSCNKHFAHLGALTNHMRVHYYLPYKCQYCFKQFSKKRSHIMHEKKHVLKNVVISATSQNKNNIVIEVNDEPQVEHCNDSEFVHTQVDDNSTGTHFMDIEHLWFSCDVCEEKFSTPLQLNVHRNSHPGIVPFVCKICNRSFQFKFRWNWHLKVHYQKHNSNSKSKQQTNNLKSSISKLKVESIHHTDKMKCRYCKKEYNSISQWKKHMTMSKECRRHCKSNLPEFTSNKTTKNSSKFGRYRCNICEKTYSTTSNRNIHKRNVHNVLDTTNLITDDTVLQKDKPMDIIQQKLAIKKRNRGNHTNGTKCGLCGKIYSNVGNLSRHISIIHTKTFEPITCNVCGSTFKHKFSYHEHLKNKHKQLFKHYVETNPTNKKTGGQIMEVNKKNIMKYFCKICKMKFADNITLQEHSKIHTLNMYMCKDCGQQFETNVTLGNHILENHKSNISTSTINEHVENYESQNAAPELIDYKRKRVQCKLCLKVLNTPKYLRLHMRLHTGVKPFKCIKCNQAFRFKSNLRVHQKKDTCCIP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -