Basic Information

Insect: Myzus persicae
Gene Symbol: -
Assembly: GCA_001856785.1
Location: NW:991409-996893[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.04 3.1 8.2 1.0 1 17 112 128 112 128 0.94

2 14 6.1e-05 0.0048 17.0 6.3 1 23 140 162 140 162 0.98

3 14 2.8e-06 0.00022 21.2 1.6 1 23 168 190 168 190 0.98

4 14 8.2e-07 6.4e-05 22.9 1.8 1 23 196 218 196 218 0.96

5 14 4.3e-06 0.00034 20.6 3.1 1 23 224 246 224 246 0.98

6 14 4e-06 0.00031 20.8 1.0 1 23 252 274 252 274 0.99

7 14 4.3e-06 0.00033 20.7 0.5 1 23 280 302 280 302 0.99

8 14 0.00091 0.071 13.3 5.8 1 23 308 330 308 330 0.98

9 14 4.9e-07 3.8e-05 23.6 3.9 1 23 336 358 336 358 0.99

10 14 1.4e-08 1.1e-06 28.5 5.0 1 23 364 386 364 386 0.99

11 14 9.4e-07 7.3e-05 22.7 0.8 1 23 392 414 392 414 0.99

12 14 2.2e-05 0.0017 18.4 2.6 1 23 420 442 420 442 0.99

13 14 1.7e-08 1.3e-06 28.2 1.1 1 23 448 470 448 470 0.99

14 14 7.5e-06 0.00059 19.9 1.1 1 23 476 498 476 498 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.04	3.1	8.2	1.0	1	17	112	128	112	128	0.94
2	14	6.1e-05	0.0048	17.0	6.3	1	23	140	162	140	162	0.98
3	14	2.8e-06	0.00022	21.2	1.6	1	23	168	190	168	190	0.98
4	14	8.2e-07	6.4e-05	22.9	1.8	1	23	196	218	196	218	0.96
5	14	4.3e-06	0.00034	20.6	3.1	1	23	224	246	224	246	0.98
6	14	4e-06	0.00031	20.8	1.0	1	23	252	274	252	274	0.99
7	14	4.3e-06	0.00033	20.7	0.5	1	23	280	302	280	302	0.99
8	14	0.00091	0.071	13.3	5.8	1	23	308	330	308	330	0.98
9	14	4.9e-07	3.8e-05	23.6	3.9	1	23	336	358	336	358	0.99
10	14	1.4e-08	1.1e-06	28.5	5.0	1	23	364	386	364	386	0.99
11	14	9.4e-07	7.3e-05	22.7	0.8	1	23	392	414	392	414	0.99
12	14	2.2e-05	0.0017	18.4	2.6	1	23	420	442	420	442	0.99
13	14	1.7e-08	1.3e-06	28.2	1.1	1	23	448	470	448	470	0.99
14	14	7.5e-06	0.00059	19.9	1.1	1	23	476	498	476	498	0.98

Sequence Information

Coding Sequence: ATGGAGCCATTAAGAACGTATACTAGTGATTCTACAATAAATTCCAATTTCAGTTCTAGAATGTTGACGATTCCGCTGATTAGATGTGATGATCAAGCATTTAATAAAGCTATTAAACaggaatatattgattttacagaaCATATTGTTGATGATGAATTATTACAAAGAGAaacTGAAGAAGTAAAATCAATggatacagaaataaaaaaagaaatagatATTATTGAAGGTTATAAATTTGAAGGAATAGTTGCAATCGAAAGCCACACTTCAGAATTCATAACTCGTATGAATTCAGACGAGAGATCTAACTTAGAAAATCCTTTAACATTCTTTTGTGATATCTGTGATGAATCATCTTACAGTAAATCACATTTAAAACCCCCGTTACTTCTTTATACTGGAAAATGTCACCATAAATGTCGTACCTGTGAAAAAAGATTTTGTCAAGCACAATATTTAGAAATCCATATGAAAACACATACCAGAAAAAAGTCATATATTTGTGATATTTGTGATGAAGTGTTTTTTCATAAAAGAAGTTTAACAGTCCATATGAGTAAACATACTGGTGAATTGCCATATAAATGTCATATCTGTGATAAAAAATTTCCTGTATCGTCATATTTAAAAAGGCATGCAATATTACACTCAGGAGAAAAGCGATATTGTTGTGGTAACTGTGATCAATCATTTTATCGAAAAGAAAGTTTAAAAGGGCATATTAGAACACATACCGGAGAGAAGCcttttaaatgtcaaatttgTAATAAGGAGTATTTTACAGCATCAGTTTTAAGAAggcatataaaaatacatacaggTGTAAAGCCCTATAAATGTGAAATCTGTGATAAAGGGTTTTCTCATGTGGAAGTTTTAACAGTTCATCAAATAACACATACAGgaaaaaaaccatataaatgTGCTACCTGCAATAAACTGTTTtctacaaaatcaaatttaaaatgtcataccACAACACATACTGGAGAACGGTCGTATAAATGTCATgtctgtaataaaaattattctacaTCGTCATATTTAATAAACCATAGAAGAGTACACACAGGAGAACGGCCATTTAAATGTCATGTCTGTGATAAAAGGTTTGCTCAATCAGGTCATTTGAAACGCCATATGAGAATACATACCGGAGAACGACCATTTAAATGTGGTATCTGTGATAAAGAGTTTGCTGCagcatcaaatttaaaacatcataCTCTAACACATACTAGAGAAAAGCCATTTAAATGTGATAAATGTGATAAATGGTTTTCTatgttaacaaatttaaaaaatcataccAGGACACATACTGGAGAACGGCCATTTAAATGTCAAATCTGTGATAAAGGGTTTTCTACATCATCAAATTTGTTAAACCATACTAGAATACATACTAGAGAAAAGCGATATAAATGTGATAAGTGTGATGAAGGGTTTTCTCGTGCTGATACTTTTAAATCCCATTCAAAGATACATTCtggaaaaaaatga
Protein Sequence: MEPLRTYTSDSTINSNFSSRMLTIPLIRCDDQAFNKAIKQEYIDFTEHIVDDELLQRETEEVKSMDTEIKKEIDIIEGYKFEGIVAIESHTSEFITRMNSDERSNLENPLTFFCDICDESSYSKSHLKPPLLLYTGKCHHKCRTCEKRFCQAQYLEIHMKTHTRKKSYICDICDEVFFHKRSLTVHMSKHTGELPYKCHICDKKFPVSSYLKRHAILHSGEKRYCCGNCDQSFYRKESLKGHIRTHTGEKPFKCQICNKEYFTASVLRRHIKIHTGVKPYKCEICDKGFSHVEVLTVHQITHTGKKPYKCATCNKLFSTKSNLKCHTTTHTGERSYKCHVCNKNYSTSSYLINHRRVHTGERPFKCHVCDKRFAQSGHLKRHMRIHTGERPFKCGICDKEFAAASNLKHHTLTHTREKPFKCDKCDKWFSMLTNLKNHTRTHTGERPFKCQICDKGFSTSSNLLNHTRIHTREKRYKCDKCDEGFSRADTFKSHSKIHSGKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -