Mper001346.1
Basic Information
- Insect
- Myzus persicae
- Gene Symbol
- -
- Assembly
- GCA_001856785.1
- Location
- NW:23360-25281[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.4e-10 8.1e-08 31.6 0.0 1 35 18 53 18 59 0.90 2 2 5.1 2.9e+03 -2.2 0.0 2 11 65 74 64 74 0.89
Sequence Information
- Coding Sequence
- ATGCCGCGTAATCCAAAAAGATCGCTAGGTACGAGGGCGTATGCAAACTATACGCCGGCAACGTTACAGGCATGTCTAAGAGCTATAAAGTCCAAACAAATGACACAACGTAAAGCTTCCGAACACTACAAGATACCTAGGTCAACCATAAAGAATAAACTAAAAGTATTGCACAGTAATAGTGTTGGGCATCCCACAGCATTTACTCCCGCCGTGGAAGCTAGCTTCGCACAGCATTGCATGAAACTTGCCGATTTTGGTTTCCCATTAATCCCTTCGGACCTTAAGATGTGTGTAACTCGTTACTTAGATTGTAAGGGAGTTCGAGTTTCTCAATTTACTAACAATATTCCGGGTGATGACTGGATTCGCGGGttcttaaaaagaaataaagatTTATCGTTGAAAGTCagtgcaaatattaaaaaaagtcgTGCGAACATCACAACTGAcgatataaatgattatatggACCGGTCGTATCACAAAAATGTCCAATGA
- Protein Sequence
- MPRNPKRSLGTRAYANYTPATLQACLRAIKSKQMTQRKASEHYKIPRSTIKNKLKVLHSNSVGHPTAFTPAVEASFAQHCMKLADFGFPLIPSDLKMCVTRYLDCKGVRVSQFTNNIPGDDWIRGFLKRNKDLSLKVSANIKKSRANITTDDINDYMDRSYHKNVQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00972971;
- 90% Identity
- iTF_00972971;
- 80% Identity
- -