Mcer003580.1
Basic Information
- Insect
- Myzus cerasi
- Gene Symbol
- -
- Assembly
- None
- Location
- Mc8931:1567-8064[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00032 0.043 14.9 2.4 1 23 240 262 240 262 0.97 2 11 0.00024 0.032 15.3 1.7 1 23 268 290 268 290 0.98 3 11 0.0041 0.55 11.4 3.1 1 23 296 319 296 319 0.96 4 11 0.32 43 5.5 2.1 1 21 325 345 325 347 0.94 5 11 7.8e-05 0.011 16.8 2.9 1 23 353 375 353 375 0.99 6 11 3.1e-05 0.0042 18.1 0.8 1 23 381 403 381 403 0.98 7 11 0.00055 0.074 14.2 3.1 1 23 410 433 410 433 0.97 8 11 1.1e-05 0.0015 19.5 0.9 3 23 441 461 440 461 0.98 9 11 0.00011 0.015 16.3 1.2 1 23 467 489 467 489 0.98 10 11 0.00017 0.023 15.8 6.1 1 23 495 517 495 518 0.96 11 11 4.6e-06 0.00061 20.7 3.6 1 23 532 554 532 554 0.97
Sequence Information
- Coding Sequence
- ATGTCTGAAAACGAAGGAACACCTATTGTGTTAGATGGAGAATCATCTGATAATACTATGAGTTTTGATGAGAATCTCATAAAGTTAGAGTCTCAACTTTCAATATCTGACACCGAAGAAACTATAAAAGATATACAAAATTACTTGGATTCATTTAATGAAGAAATTGAAGGAAATGAAGTAACACAAGTACAAGCTGATCGGAACTCAGTAGAACCTGCACATCTCATGAATCAAAATGTAAAATATTATTATAAAACAACTACAGAAGATGGCCATGTAGTTATGGTTGAAGGACATCCATACCATGGTTTACAAATGATGGATAACACAAATCAAAACCATACAGACAACTTAACTCAAATTGCTCTGCCTTATGCACAAGATAAAATTAATAAAGATATCCCTCAAATTGTTGCTTTGGGAGTTGGTAATGAATATCAAACCGTCACTCTCATTCAATCTGAAACTGATGCCAACAAACATGTTCTTTATGTGGTCAAAGAAAATGACAAAAACAAGGAAATATCAAATGTTAGTTTTGAGATACCTCAAGAAGATCATGACCCTAATTTTAAAAACGTATGTGATTTTAATGATGGAGAAGATCTAACTCTACCAAAAAAACAAAAAATTGAAGGTTCAAAAGAAGAAGGTGACAAAACCAAAATACTTAAATTAGTACCTAAAAAATCACTGACTGTAACTCCTAAAGTACATGTTTGTGATTATTGTAATTACTCTTCTGGAAAAAGGTATTTGTTGGTTCGTCATATGAAATCTCATTCTAAAGAACGTCCACATCAGTGTAATATTTGTGCAAGTGGGTTCAAAACTCTAACTTCTTTGCAGAATCATCTTAACACCCATACTGGAACAAAACCATTTCATTGTCGAAGTTGTTCAAGTTCTTTTACTACATCGGGAGAACTTGTTAGACATGTTCGGTATAAGCATACTCATGAAAAACCTCATAAATGTTCAATATGTGACTATGCAAGTGTAGAAGTGGCGAAAATGAGAAGTCACATGAGATGTCATACTGGTGAAAAACCATACAAATGTCCCCATTGTTCTTATGCAAGTCCTGATACATTTAAATTGAAGCGCCATTTGCGTACTCACACTGGTGAGAAACCATATGAGTGTGATATTTGCTTAACTAAGTTTACCCAATCCAACAGTTTAAAAATACACAGACAAATACATAGCGGTGAAAAACCTGTATTTAAATGTGACCATTGTCCAGTCACTTGTGGTCGGAAAACTGATTTACGTATTCATGTACAAAAGCTTCATACTTCAAACAAACCTATTTTGTGCAACCGATGTGGTAAGACATTCCCTGATCGTTACCAGTTTAAGGTTCATTTACTTTCACACAAAGGGGAAAAATGTTTTAAATGTGAATTGTGTTCTTATGCCGCCACAACTCAACGTCATCTTGAAACTCATATGTTAGTACATTCAGATAAAAAACCATTTCAATGTGATCAATGTACTCAGGCATTTAGACAAAAACAATTACTACGCCGCCATCATAATTTGCATCATAATCCAACTTATGTACCACCTAAACCACACGAAAAAACTTATCGTTGTAATACATGCACACAGTCATTTAGACATAAAGGAAATTTACTAAGACATATGGGAAATCATATGCGACGATTAATTGCAAATGATAGAAATACTGTATTAAAACAAAGACTAGAGTATACAGATTCAGCTAACGAGGGTGAATCTCAGGACACAAATATTCTAACAAGTGGAACTGGAGTTATATCAGTAAGAAGTGATGATGGGCAGCAATATGTTGTACTTGAAATGATTCATCTTGGTGGTCAAGATCAGAAAGATTGCACATCTACAAATGTACCAATAAAACAAGTTGACCAATCTTCTTCACCAAGTCAAAAAGACCTTACGGTTTTACAACCAGTGCCTGTGTCAGACGTGAAAGAAGAATGTGATGAAGCTGTTGAGAATTTTTTTGGTTATGATGATATAGCTAATGAAGAAACAACAAACGCAGGTGGTTAA
- Protein Sequence
- MSENEGTPIVLDGESSDNTMSFDENLIKLESQLSISDTEETIKDIQNYLDSFNEEIEGNEVTQVQADRNSVEPAHLMNQNVKYYYKTTTEDGHVVMVEGHPYHGLQMMDNTNQNHTDNLTQIALPYAQDKINKDIPQIVALGVGNEYQTVTLIQSETDANKHVLYVVKENDKNKEISNVSFEIPQEDHDPNFKNVCDFNDGEDLTLPKKQKIEGSKEEGDKTKILKLVPKKSLTVTPKVHVCDYCNYSSGKRYLLVRHMKSHSKERPHQCNICASGFKTLTSLQNHLNTHTGTKPFHCRSCSSSFTTSGELVRHVRYKHTHEKPHKCSICDYASVEVAKMRSHMRCHTGEKPYKCPHCSYASPDTFKLKRHLRTHTGEKPYECDICLTKFTQSNSLKIHRQIHSGEKPVFKCDHCPVTCGRKTDLRIHVQKLHTSNKPILCNRCGKTFPDRYQFKVHLLSHKGEKCFKCELCSYAATTQRHLETHMLVHSDKKPFQCDQCTQAFRQKQLLRRHHNLHHNPTYVPPKPHEKTYRCNTCTQSFRHKGNLLRHMGNHMRRLIANDRNTVLKQRLEYTDSANEGESQDTNILTSGTGVISVRSDDGQQYVVLEMIHLGGQDQKDCTSTNVPIKQVDQSSSPSQKDLTVLQPVPVSDVKEECDEAVENFFGYDDIANEETTNAGG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01033234;
- 90% Identity
- -
- 80% Identity
- -