Mcer025613.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Myzus cerasi
Gene Symbol
-
Assembly
None
Location
Mc13123:826-6161[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.026 3.5 8.9 1.4 1 23 560 582 556 582 0.88
2 16 2.3e-05 0.0031 18.5 0.6 1 23 652 674 652 674 0.96
3 16 0.27 37 5.7 3.3 1 23 680 702 680 702 0.92
4 16 0.0031 0.42 11.8 5.5 3 23 738 759 737 759 0.97
5 16 0.00027 0.036 15.2 2.4 2 23 819 840 818 840 0.96
6 16 0.007 0.94 10.7 4.3 1 23 845 867 845 867 0.98
7 16 6.6e-05 0.0089 17.1 0.3 1 23 920 942 920 942 0.98
8 16 0.00077 0.1 13.7 1.9 1 23 948 970 948 970 0.98
9 16 0.0022 0.29 12.3 0.6 2 21 1006 1025 1005 1026 0.94
10 16 0.00036 0.048 14.8 1.6 1 23 1056 1079 1056 1079 0.96
11 16 0.00011 0.014 16.4 0.1 2 23 1117 1139 1116 1139 0.95
12 16 0.0002 0.028 15.5 3.5 2 23 1147 1169 1146 1169 0.97
13 16 0.001 0.14 13.3 0.6 1 23 1201 1223 1201 1223 0.97
14 16 0.00028 0.038 15.1 0.2 1 23 1228 1251 1228 1251 0.95
15 16 8.3e-05 0.011 16.8 0.6 2 23 1283 1304 1282 1304 0.97
16 16 6.1e-06 0.00081 20.3 1.8 1 22 1310 1331 1310 1331 0.97

Sequence Information

Coding Sequence
ATGGATGTTCACAAAAAAGTTGAGCAATGTGCAATGTTGAAAGCAAGTACTGATGAAACATCTACAATAAGAGAATATAATCAAACTGAGGTTGTAAATGATTCTTCTTTTAATACAAACGATGGACAATTATTATCCAGAGATGTTACAGCAAGGAATAGTTCAGATCATACCAGTTTAGTGAACAGCAATTCAACAGTTGTATCGACTGCTCCACACACCTATATTCCGAACAATGACATCATTTCAAATCCAGAGCCAACTGAAACCTTACCGAATAGCTTAGGAAGAAATAATTTAGAACTAATACCGAATGATGCATTATTTATATCATATCCTCCTGGGGCTCCTCGTCTTCCTGATGTACCATTAGATTATGAACCAGCGCCTGGTGATAATTCTCCAGGGGCCATTTTCTTTAGAAATAGGACCCGGCTAAATATTGCAAGTAAAAAGCAAGACAAAGTCTTTCAACAAACTATGATACGTCATTTTCAGAACAAAATAAACAGACAGCAATCAGCTCTTAATCCACGTCGTTCAATAGAAAACAACCCAAGCCCAAGAGTAGATTTTCGTGACATTTTACAAGCTTACTCCGATGTAGAGTTGTATGGAACTAATTTGGGCAACAGAGTACATCTCAATACAACTCCTGGGAGAATAAATAGTACAGATCAAACTAATTTAGCTAACAGAAATGAATCAATTGTATCGGCTGCTTCACTTAACTCAATCTCAAAGAATAATAGCCCTGTTATAAATATTAAGCAAGAAAAAAACTTGAGTACAACTTTTGGAAGAATAAATAGTACAGATCAAACTAATTTAGCCAACAGAAATGAATCAATTGTATCGGCTGTTTCACATAACTCAATCTCAAATAATAATAGCCCTGTTATAAATATTAAGCAAGAAAAAAACTTGAGTACAACTCTTGGGAGAATAAATAGTACAGATCAAACTAATTTAGCTAACAGAAATGAATCAATTGTATCGGCTGCTTCACATAACTCAATCTCCAATAATAATAGCCCTGTTATAAATATTAAGCAAGAAAAAAACTTGAGTACAACTCTTGGGAGAATAAATAGTACAGATCAAACTAATTTAGTCAACAGAAATGAATCAATTGTATCGGCTGCTTCACATAACTCAATCTCCAATAATAATAGCCCTGTTATAAATATTAAGCAAGAAAAAAACTTGAGTACAACTCTTGGGAGAATAAATAGTACAGATCAAACTAATTTAGTCAACAGAAATGAATCAATTGTATCGGCTGCTTCACATAACTCAATCTCAAATAATAATAGCCCTATTATAAATATTAAGCAAGAAAAAATTTTGTGTACAAATGTCAGAGAAAGGAATAGTTCATATCAAGTGGATTCAGTGAACAGCAATGAATCAACTTCGGCAAACGAATCTCGCAATTTATTGGCCAAACAAAACTCTTCTAATATAGCTAATAATAATATTTCATGTACAGTTAGAGAAACATCTTATTTCTGGATTAGAAAATTGCCTAATATTAAAAACAAATTTGGCAACAATGATTATGATCAGACATCACAAGACAATATTATATTTATATGTAGGATTTGTAAAAATTCTCCATCTACAGATATACATTCATTTGCATTACACATGAGTGGTCACCGTGAGTGTAATATGCATGAATGTATTGTGTGTGATAAAACATTTACCTCTGTAGTTCTTTGGACAGACCATATGACCTATCATCAACAGCAAGTAGATTTCAATATGTCAACCGTTCAGTTTAATCCTCTAGAAACTGAATCTAATACATTAGAAGACCCTATTAATTCTGAAAACATAGAACCTCAAGTTGGTGCAAACTTAAGAAACAGAAAATTAAAGATATCTTTAATGGATGATTCACATTCAGATACAACAAGGTTAAATAGTGCCAAAAAAATTAAATACCAATATGACTGCAAAACATGTAAAAAAGTGTTTCCTTCTGAGAGCTCATTACAAGTTCATCTGACTCTTCATAATAAACCACAATCATTTTCTTGTAGGTATTGTAATAAAATATTTTCTGGAAAGGGTCCATGTACAAATCATGAAAAATCTCACATCATCCAAAACAACATAAGTATTGAAGATAACACTGATTTTGAAACAATGTCAATAAAACATATAAAAAAAAAAAAAATATCATCAATTAAAAAAACTAATTTATGTAATTTATGTAACAAGAAATTTACTAAGCGCTGTTATTTTACAAATCATATGATGATAAAGCATAATATAAATCCAAACACACCAAAACAACTTCCATCGATTGATTGTAACGAACCGATCATTCAGTCTGAAAACATTGAGTTAACTAATGAATACAAAGACAAACTATCAGTTTCAGTAAATAACAAAAATAACAATTTGAATAACCATGTTAAAAAAAGCAATGAGAAGAAATCAACAGTTTGCATGTCTTGCAACAAACATTTTGCACACCTCGGTGCCTTAACTAATCACATGCGTATTCATTATCATAGACCTTATAAATGTCAATATTGCTTCATGCAATTCAGTCGGAAACGTCCTTATATTAAGCATGAGAAAAAACATTTAGTGAGAAGTGCAACCAGTCAAAACAAAAACAATATAGTTATTGAAGTTAATGATGTACCACAAATTGAACATAGTAATGATATCGAGTTCGTTCATACTCAAGTGGATGACAATTCAAGTGGTATAAATTGTATGGACATAGAACATTTATGGTTTTCCTGTGATGTGTGTGAGGAAAAATTCTCTACTCCATTGCAATTGAATGTTCACCGAAATTCACATTCTGGAATTGTACCATTTGTATGTAAGATTTGTAATAAATCTTTTCAGTTTAAATTTCGATGGAATTGGCATTTAAAAGTCCACTACAAAAAACACAATTCAAATTCAAAAAGTAAGCAACAAACAAATAATTTAAAATCAAACATTAGTAAGCCAAAGGTTGAATTTATACATCATATAGATAAAATGAAATGTCGATATTGCAAAAAAGAATATAACTCTATATCTCAGTGGAAGAGACATATGACAATAAGCAAGGAATGTCGTCGCCATTGTAAAAGTAACCTCCCAGAGTTTACATCAAATAAAACGACAAAGAATTCTTCCAAATCTAGTCGATACAGATGTAACATATGTGAGAAAACATATAGTACTGCTTTCAATAGAAATGTACATAAAAAAAATGTTCATAATGTGTTAGATACAACCGATTTGAATACTTATGATAATATTGTTTTAGAACAAGATAAACCAATGGACATAATTAAGAAACGAAATATAAGTAATCACACTAATGACACTACATGTGGGTTATGTGGGAAAATATACAGTAATGTAGGTAATTTGAGTCGCCACATATCCATAATTCATTCTCAAACTTTTGAACCTATAACATGTAATGTTTGTGGAAGTACATTTAAACACAAATTTTCCTACCAAGAACATTTAAGAACTAAACATAAACAATTATTTAAACATTATGTAGAAACAAACCCTACAATTAAAAAAAGCAGCCGGCAAATTATGGAAGTAAATAAAAAAAAAATTATGAAATACTTTTGCAAAATATGTAAAGTGAAGTTTGCTGACAATATTTCATTACAAGAACATTCAAAGATACATACTTTAAATATGTATATGTGTAAAGATTGTGGTCAGCAGTTTGAGACAAACGTTACTCTAGGGAATCATATTTTAGAAAACCACAAAGACAATATTTCTACATCTAGTATAAACAAACAGGTCAAGAATTATGAGAGCCAAAATGCTTCTCTAGAATTAGTTGATTATAAACGTGTTCAGTGTAAAATTTGTTTAAAAGTCTTAAAAACCCCAAAATATTTGAGGTTACACATGAGATTACATACTGGTGTCAAACCATTCAAATGTGACAAATGTAACCAGGCTTTCAGATTTAATTCAAACTTAAGAGTCCATCAAAGGAAAGATTCTTGTATCCCTTAA
Protein Sequence
MDVHKKVEQCAMLKASTDETSTIREYNQTEVVNDSSFNTNDGQLLSRDVTARNSSDHTSLVNSNSTVVSTAPHTYIPNNDIISNPEPTETLPNSLGRNNLELIPNDALFISYPPGAPRLPDVPLDYEPAPGDNSPGAIFFRNRTRLNIASKKQDKVFQQTMIRHFQNKINRQQSALNPRRSIENNPSPRVDFRDILQAYSDVELYGTNLGNRVHLNTTPGRINSTDQTNLANRNESIVSAASLNSISKNNSPVINIKQEKNLSTTFGRINSTDQTNLANRNESIVSAVSHNSISNNNSPVINIKQEKNLSTTLGRINSTDQTNLANRNESIVSAASHNSISNNNSPVINIKQEKNLSTTLGRINSTDQTNLVNRNESIVSAASHNSISNNNSPVINIKQEKNLSTTLGRINSTDQTNLVNRNESIVSAASHNSISNNNSPIINIKQEKILCTNVRERNSSYQVDSVNSNESTSANESRNLLAKQNSSNIANNNISCTVRETSYFWIRKLPNIKNKFGNNDYDQTSQDNIIFICRICKNSPSTDIHSFALHMSGHRECNMHECIVCDKTFTSVVLWTDHMTYHQQQVDFNMSTVQFNPLETESNTLEDPINSENIEPQVGANLRNRKLKISLMDDSHSDTTRLNSAKKIKYQYDCKTCKKVFPSESSLQVHLTLHNKPQSFSCRYCNKIFSGKGPCTNHEKSHIIQNNISIEDNTDFETMSIKHIKKKKISSIKKTNLCNLCNKKFTKRCYFTNHMMIKHNINPNTPKQLPSIDCNEPIIQSENIELTNEYKDKLSVSVNNKNNNLNNHVKKSNEKKSTVCMSCNKHFAHLGALTNHMRIHYHRPYKCQYCFMQFSRKRPYIKHEKKHLVRSATSQNKNNIVIEVNDVPQIEHSNDIEFVHTQVDDNSSGINCMDIEHLWFSCDVCEEKFSTPLQLNVHRNSHSGIVPFVCKICNKSFQFKFRWNWHLKVHYKKHNSNSKSKQQTNNLKSNISKPKVEFIHHIDKMKCRYCKKEYNSISQWKRHMTISKECRRHCKSNLPEFTSNKTTKNSSKSSRYRCNICEKTYSTAFNRNVHKKNVHNVLDTTDLNTYDNIVLEQDKPMDIIKKRNISNHTNDTTCGLCGKIYSNVGNLSRHISIIHSQTFEPITCNVCGSTFKHKFSYQEHLRTKHKQLFKHYVETNPTIKKSSRQIMEVNKKKIMKYFCKICKVKFADNISLQEHSKIHTLNMYMCKDCGQQFETNVTLGNHILENHKDNISTSSINKQVKNYESQNASLELVDYKRVQCKICLKVLKTPKYLRLHMRLHTGVKPFKCDKCNQAFRFNSNLRVHQRKDSCIP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-