Basic Information

Insect: Myzus cerasi
Gene Symbol: su(Hw)_1
Assembly: None
Location: Mc2070:25049-29669[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 5.7e-05 0.0076 17.3 1.3 1 23 186 208 186 208 0.95

2 13 0.0002 0.028 15.5 0.6 1 23 246 269 246 269 0.97

3 13 0.0014 0.19 12.9 2.3 2 23 276 297 275 297 0.95

4 13 2.8e-05 0.0038 18.2 1.5 1 19 304 322 304 325 0.95

5 13 3e-08 4e-06 27.6 0.3 1 23 336 358 336 358 0.97

6 13 8.9e-06 0.0012 19.8 0.4 1 23 368 390 368 390 0.98

7 13 1.8e-06 0.00024 22.0 0.5 1 23 396 418 396 418 0.99

8 13 0.00012 0.016 16.3 0.8 1 23 424 446 424 446 0.99

9 13 7.2e-05 0.0097 16.9 3.6 1 23 452 474 452 474 0.95

10 13 6.6e-07 8.9e-05 23.4 1.6 1 23 480 503 480 503 0.97

11 13 0.024 3.2 9.0 0.8 1 23 509 531 509 531 0.97

12 13 2.5e-06 0.00034 21.5 0.7 1 23 537 559 537 559 0.96

13 13 1.3e-06 0.00017 22.5 1.3 3 23 567 588 566 588 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	5.7e-05	0.0076	17.3	1.3	1	23	186	208	186	208	0.95
2	13	0.0002	0.028	15.5	0.6	1	23	246	269	246	269	0.97
3	13	0.0014	0.19	12.9	2.3	2	23	276	297	275	297	0.95
4	13	2.8e-05	0.0038	18.2	1.5	1	19	304	322	304	325	0.95
5	13	3e-08	4e-06	27.6	0.3	1	23	336	358	336	358	0.97
6	13	8.9e-06	0.0012	19.8	0.4	1	23	368	390	368	390	0.98
7	13	1.8e-06	0.00024	22.0	0.5	1	23	396	418	396	418	0.99
8	13	0.00012	0.016	16.3	0.8	1	23	424	446	424	446	0.99
9	13	7.2e-05	0.0097	16.9	3.6	1	23	452	474	452	474	0.95
10	13	6.6e-07	8.9e-05	23.4	1.6	1	23	480	503	480	503	0.97
11	13	0.024	3.2	9.0	0.8	1	23	509	531	509	531	0.97
12	13	2.5e-06	0.00034	21.5	0.7	1	23	537	559	537	559	0.96
13	13	1.3e-06	0.00017	22.5	1.3	3	23	567	588	566	588	0.97

Sequence Information

Coding Sequence: ATGGCCGTACGGGGACGGGACGATTTCCCGCGCGTACGGTATTTACCGGGCCGCGCGCGTTCGCCATCTTGCTCTCGTGTGACGCCTGTGTTGACGACTGAACGCCGTTTAAGGGGCTCGCCGCTTGTGCAACAGTCAAGAAGAATCAACAGTGTGCGGCCGCCGACGGTCGTGCTCGCGTTTGGCCCTTCAGGAGATCCCGTCCGTTCCCGTGTCCGTCGGGCGATATCTGCGGGCCGCAGTCGCCGTAGTTTCGTACAGACACGACGAGAAAGCAAAAAAATGGATTCAACACCAAGAAAACGTGGTCGACCGCGTGTAGTTAAAATGGAGAAACGTAGCCCTGAACCTGAAGATTTAGAAGCTATATTACAAGGTATGGATGATGAAGCTATTGATGATTATGATTACGTACCAAATGGTGTGGACTATGAAGTTATCAAAAATAAAAAAAATATCAACAATAATGAAGATGTGTATGACTTTGATGTGGAAAAAGAAGATGGGCCTGGCATAATTAAAGCAGAAATAATTCCTGAACCTGATTTGCTGGAACATGCTTGTGATATATGTCCAAGAACATTCAAAACCCTCCCTGGTTTAAAAAGACATAAAACATCACATGATCGGAAACCTCAAGAAACCATTGTTTCAAATGACGATTCTGCAAAAAAAGAAATTAATAACTGTGACTGTTGTGGTGAAGATTTAGCTACTGCTCATACGATTGGTGATTTTGAATGTTATGATTGTGGTAACTTTTTCAAATTAAAAGTTAATATGGAACGCCATCAGTTAATGGTACATTGCCATGATGACATTTTAAACTGTCCCACTTGTGATTTCAGTTGTAAAGATAAAGAAACGTTATCTCAACATTTGTATTCTCATGCAGGAACTTTAAAACCTTATTCATGTCCTGTTTGCTTTACATCATTTAGTAGGAAATATCATCTTGTACGTCATAACATGCAAACTGGTTGCGATGGTTCAGAAAAACCCAAATTTCCATGTCAAGTTTGTGGAAAAGTTTTTAACCGAAAAGATAATTTAAGAGAACATTTACGAGCTCACGCTGGTCAGACTAAAAAGAAGCGTACTTATAATTGTGAATATTGTAATAAAGAATTTGTTGGCTCTGCATTATTAACAGTTCATAGAAGGAGTCATTTAGGTTACAGACCATATCAATGTGATTTATGTCCTAAACGTTTTCCGTCCAGTGGAGCTATGAAAAAGCATCGTAGAATTCACACTGGCGAACGTCCATATGAATGTCAACAATGTTTTGCTAAATTTGCGGCAAAGGAAACTTTAAATCGTCATATCAAAACACATACCGCTCTGAAACCACATTCATGTGAATTCTGTGGCAAGACCTTTATACAAATTTCACAATTGCGTGCTCATTTGTTCCATCACACAGGTGAAAATGGTTTTACATGTGATATTTGTGGCAAATCTTTTAATCGTCGTTCACGGTTAACTCTTCATACTAGATATGTACATGAAGGAGCTGAACCATTTATGTGTACTGTATGCAACAAAGCATTACTGCGAAAAGAAGATGTACAGAGACATCATATTGTTCATTCTGGTGTTAAAGCTCATGCATGTCCTATTTGTGAAAAACGGTTTGCAATGAAGTCTTCATTAAAAATTCACTTATTAACACATACAAAAGAGCCTCCACGGGCATGTGATGAATGTGGTCGTGCATTCATCCGTCAAGATTGTTTATTACGTCATATGCGTTCCAAGCATAGAGATATGTTAGCTGAAATAATGGCTGATGCTGAAAAGAAAAAACTAGAAGCTCAGCTTTTAGGAGTAGTGAAGAAAGATAAAAATGACCAAAATGATTCTGATGAAATTGACCATGATAGAGAAGACGACGATGAAAGTATTGATGAATTAGAAGATAATGGGTCAACCACAAGTGAAGAATCCAATCAAAACAATACTTTGGCAGATTCACTAATGGAATTGCTAACCGTATTAGTAGATGAAAGTACACTTAAAGAGTTTGGCTGGCCAGGAACAACAGTTGATCATTTAATTGAATCTGTGATAAAGAGATGCGGTCACACTCCTGTAGCTACTGAAGATGCATCATACATGACTAGACTTAGGGATAATTCAAAACAATTATTTTCCATTATCATTGATGATTCAGCTATTCAAACTTTACTTAGCAACCAAACAATTGAAGAAGTTATTGAACATGTGTTAAAATTGGCTAAGGCGTAG
Protein Sequence: MAVRGRDDFPRVRYLPGRARSPSCSRVTPVLTTERRLRGSPLVQQSRRINSVRPPTVVLAFGPSGDPVRSRVRRAISAGRSRRSFVQTRRESKKMDSTPRKRGRPRVVKMEKRSPEPEDLEAILQGMDDEAIDDYDYVPNGVDYEVIKNKKNINNNEDVYDFDVEKEDGPGIIKAEIIPEPDLLEHACDICPRTFKTLPGLKRHKTSHDRKPQETIVSNDDSAKKEINNCDCCGEDLATAHTIGDFECYDCGNFFKLKVNMERHQLMVHCHDDILNCPTCDFSCKDKETLSQHLYSHAGTLKPYSCPVCFTSFSRKYHLVRHNMQTGCDGSEKPKFPCQVCGKVFNRKDNLREHLRAHAGQTKKKRTYNCEYCNKEFVGSALLTVHRRSHLGYRPYQCDLCPKRFPSSGAMKKHRRIHTGERPYECQQCFAKFAAKETLNRHIKTHTALKPHSCEFCGKTFIQISQLRAHLFHHTGENGFTCDICGKSFNRRSRLTLHTRYVHEGAEPFMCTVCNKALLRKEDVQRHHIVHSGVKAHACPICEKRFAMKSSLKIHLLTHTKEPPRACDECGRAFIRQDCLLRHMRSKHRDMLAEIMADAEKKKLEAQLLGVVKKDKNDQNDSDEIDHDREDDDESIDELEDNGSTTSEESNQNNTLADSLMELLTVLVDESTLKEFGWPGTTVDHLIESVIKRCGHTPVATEDASYMTRLRDNSKQLFSIIIDDSAIQTLLSNQTIEEVIEHVLKLAKA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01167898;
90% Identity: iTF_01167898;
80% Identity: -