Mcer018453.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Myzus cerasi
Gene Symbol
-
Assembly
None
Location
Mc3458:1228-28076[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.00014 0.019 16.0 4.6 1 23 145 167 145 167 0.99
2 18 1.3e-06 0.00017 22.5 3.8 1 23 192 214 192 214 0.98
3 18 0.00057 0.077 14.1 4.4 1 23 220 242 220 242 0.98
4 18 2 2.7e+02 3.0 4.2 1 19 248 266 248 270 0.92
5 18 0.0038 0.51 11.5 3.3 1 23 276 299 276 299 0.94
6 18 1.1e-06 0.00015 22.6 1.5 1 23 305 327 305 327 0.98
7 18 4.6e-07 6.2e-05 23.8 2.8 2 23 334 355 334 355 0.98
8 18 7.9e-07 0.00011 23.1 0.6 1 23 361 383 361 383 0.98
9 18 2.1e-05 0.0028 18.6 1.6 1 23 389 411 389 411 0.98
10 18 2.7e-05 0.0037 18.3 0.2 1 23 417 439 417 439 0.99
11 18 0.0012 0.16 13.1 3.4 1 23 445 467 445 467 0.99
12 18 3.9e-05 0.0052 17.8 2.4 1 23 473 495 473 495 0.99
13 18 1.1e-06 0.00014 22.7 1.3 1 23 501 523 501 523 0.99
14 18 2.4e-08 3.3e-06 27.9 0.4 1 23 529 551 529 551 0.99
15 18 0.0038 0.52 11.5 4.7 1 23 558 580 558 580 0.98
16 18 1.1e-05 0.0015 19.5 0.7 1 23 586 608 586 608 0.99
17 18 0.0059 0.79 10.9 0.9 2 23 616 638 615 638 0.95
18 18 0.0023 0.31 12.2 1.3 1 23 643 665 643 665 0.98

Sequence Information

Coding Sequence
ATGGAACGTTTAAATTCAAAAAACAACAATATTCCTAAATTCAATAAAATATTAAAAGTATCACTTGAAAGATGTGATGATATATTGACATTAAATAACCAAAAAATAATCAAAGAAGAAATGTTTGAATTTGAAGACTTTGATATCACAATCGTAGAAGATGATTTTCTCCAAACAGTTAAACAAGAAGACGATGATGTTAAGAAAATTGCTACTCCTCTATTAGAACAACAAAATATCCATGAACAAAATGAGAATAGAACTATTCAAACAAATTCATTTAATTCTAAAGAAAATGTTGAGACTTCTAATTTTAATGATGTGGAATGTGAAGTTGGCTGTGTTGATGGTATGGTACGTAGCAACAATATTGAAATTGAGCCTGAAAGATCACAATTAATATTATCTGATATCGAGCCTAAGAACAAATTATTTAAGTGTAATTTCTGTACATTGTCATTTCCAAAAAGAAAAGATTTAACCAATCACCATAGAGTACATGTAACTCGTATAAAAAAAACCGAGCAACCTGAAGAATATCACACTACAAGAACACCTGACCAGAAAATAATTTTTCACTGTATGTACTGCACTAAGACGTTTTCAGTCAAATCAAATTTAACCGTACACATAAGGAGTCACACCGGAGAAAAACCATACAATTGTGATCTATGTAAACGATCTTTTGCTCAGAAACAAAATATGATGTGTCATATGAGAACACATACAGGATATAAACCCCATTCATGTCGATTTTGTAAAATGAAATTTGGTCATAAGTCGTTATTAGACTACCATGAATGGAAACACACTGGTATTAAACCATTTAAGTGTGAAGTTTGTGTTAGAGAATTTTCTCGGAAATCGAGTTTAGTTTTTCATCAAAAACACAGTCATACAGGTGAAAAACTTTTTAAATGCAATGTTTGTGACGAAACCTTTTATAGAAAAGCATTTTTGAAGAATCATATGAGTGTCCATAATACCCTGCAATTAGAAAAGTGCCATATTTGTGATAAAACCTATTCTTATAAATCAAGTTTACAAAGACATTTGTTGATCCATTCTGGTGAAAAGAAGTTTGAATGCGATATGTGTAAGAGATCCTTTTATCGGAAATCAGGTTTACTTGCCCATATAAAAGTTCATATGAGAAAGAGACCTTATGAGTGTAATCTCTGCAGATCAACATTTACTACAGCATCAGAACTAAAAAGCCATACAAAATCTCACACTGGTAACAAACCATTTCAATGCCTACTTTGTGACGCAAGTTTTATATTAGAGTCACTTTTAAATACTCATATGAGATCTCACTCTGGAGATAGACCATATCAGTGTCCTCATTGTTTAGTGACATATGCCCAAAAGAAAAGTTATTCTTACCATTTAAAAACTCATAAAGATCATGAACTGTATAAATGTAGTCTGTGTAAAACATCATTTTTTCAAAAAAATAAGCTAATTGATCATTTAAGAATACATACTGGCGAAAAACCTTTTAAATGCCTTGAGTGTAACGAGAGATTTGCGCAAAAAGCTTTCTTACAGTCACATATGAGAACTCACAGTATTGAACAAAAATATAAATGTGACCTATGTGGAGTAGTCTTTGAACAAAAATCAAATTTGATTAAACACATAAAAACCCATCTTGCCTTCAAATCAAAATTTAGATGTAGATTTTGTAAGACTACATTTTTACAAAAATCAACTTTTATGAATCATATGAAAATTCATTCTAAAAACCATCCTTACAAATGTAGCATATGTGGTGCTTCATATCTACAAAAAAGTAACTTGATTAAACACGAAAAAACTCATATGATTGAAAAGGCTTTACTGATATGTAAAATATGTAATCAATCTTTTCCAACAAAATTAAAACGTATAAATCATGAAAGAAAATTACACACCGAAGAAGCATTTCAATGTGTTATCTGTTTTAAACTATTTTTTGAAAAAAAGGAATTAACGCTTCATATTAAATTGCATATGAAGAATATGTCACCTAAATGTTTGAAATGTAAAGTGCCATTGCTACAAAAACCTGTTCCAGCTAAAGTATTAAGACTTATAACTGGAAATAAAATTAATCTATGTAACTTGTGTTCTGTCATCTTCTAA
Protein Sequence
MERLNSKNNNIPKFNKILKVSLERCDDILTLNNQKIIKEEMFEFEDFDITIVEDDFLQTVKQEDDDVKKIATPLLEQQNIHEQNENRTIQTNSFNSKENVETSNFNDVECEVGCVDGMVRSNNIEIEPERSQLILSDIEPKNKLFKCNFCTLSFPKRKDLTNHHRVHVTRIKKTEQPEEYHTTRTPDQKIIFHCMYCTKTFSVKSNLTVHIRSHTGEKPYNCDLCKRSFAQKQNMMCHMRTHTGYKPHSCRFCKMKFGHKSLLDYHEWKHTGIKPFKCEVCVREFSRKSSLVFHQKHSHTGEKLFKCNVCDETFYRKAFLKNHMSVHNTLQLEKCHICDKTYSYKSSLQRHLLIHSGEKKFECDMCKRSFYRKSGLLAHIKVHMRKRPYECNLCRSTFTTASELKSHTKSHTGNKPFQCLLCDASFILESLLNTHMRSHSGDRPYQCPHCLVTYAQKKSYSYHLKTHKDHELYKCSLCKTSFFQKNKLIDHLRIHTGEKPFKCLECNERFAQKAFLQSHMRTHSIEQKYKCDLCGVVFEQKSNLIKHIKTHLAFKSKFRCRFCKTTFLQKSTFMNHMKIHSKNHPYKCSICGASYLQKSNLIKHEKTHMIEKALLICKICNQSFPTKLKRINHERKLHTEEAFQCVICFKLFFEKKELTLHIKLHMKNMSPKCLKCKVPLLQKPVPAKVLRLITGNKINLCNLCSVIF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01033200;
90% Identity
-
80% Identity
-