Mcer013313.1
Basic Information
- Insect
- Myzus cerasi
- Gene Symbol
- -
- Assembly
- None
- Location
- Mc3912:5589-13033[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.4e-07 0.00046 20.5 0.0 5 39 145 179 144 184 0.88 2 2 2.2 1.6e+03 -0.5 0.0 25 37 440 452 439 460 0.73
Sequence Information
- Coding Sequence
- ATGTCTGCCCGCGCGCGCGTGTGTGTGAGTCGCCGCGATCTTGTTAAATCGTGTACGTTCCTGTGCGTGCGTGCGAAAGAGAATGAGAGAGAGAGAGACGATGACGAGCAGGCGTATATTATTATTATGTTACATTATAGTCGTCGAGAGACGTGTGCATGTGCGGCGGCGAGTCGAGGGAGAGTGCCACCAGATGACGATCTCGTCGTGTTTTATGCACGCGTGTGTGTGAGAGAGAGAGCATACCGCTGCGACCGTGTATATACCGCGTGGTATCGGCTCGCGGGGGCGTTTCGGGAGAACGACGGCGGCGGCGGCGGTGCCCCGCGGATGATTGATAGTCGGCAGAGGTGTCGCGACTCTCTGCTGGCTCGTAAGTACAAAAAAAAAAAAATTGGGTGCAGACCCTATGTGAATTATGCAGTTTCCACAATAGAAGATGCCTTGAAGACAATAGTTGATGGTGAACTATCAGTTTTGGCTGCTAACAAACGTTTTAGTATACCTTATGGTACATTATATAACCGTTTTCATGGTGAACATGTCAAAACAACTGGTGGTCAGACAGTGTTTAGTAAAGAAGAAGAGAAAAGTATTCTAAGTGCAGTGATAAAATGTGGTGATTGGGATTTTCCCTTATCGTTAATGGATTGTGCAATTAGTGTGAATTTTTGCGACACCCGTTATACTCAAAAATCAATTTTCCAAGAAGATAAAATTATTAATTCAGACGAAGAAAATGATTATGTAAGAATTCCAGACAAATTAGATTGTCCTCTGTGCTTTACCGGTTGTTTACCTTCTGAAAGTGATGGGGCTCATAAATGTGTTGTTTGTGGGATACCGGTTCACCCACTATCTACTTGTTCAAGAAATATATCAGGCAAAGACAATATAAGAGTTTGTTTCTCATGTTGGATATTAGAGGATGACACGTGTACAAATAATAATAATTGTAAAGTTAGTGAACACTTGATTGAGGAACGAACAGCTGTGGAATCGTGGAATCGGAAAAGCCAGAGAAAAAATAAGTCTTACCTTGTGTCAAACCCACATTTAAGACATCTGGACCTTAGCGATTCAAAAAAAATAACATCGCTTCCTATATTGAAAAATGGATCTCGTTCCACAGAACTTAAGAATGTTAAGTCAAATGGAGTACAAGGTAGAATTGTATTGACTAACACTTGTGCTnCTTGTGCTTTTGATTCGTTGGCTTCGTTGTTAATGGTAGCGTATTGTGACAGCCATAAATATTCTGAAAAAGTTGACTCTATTGGTGAACATCGGTTTTTTAATTTTATTTCAAAAATTGTAAGATATGGAATATCGTGCAGTACATACTCGGAAAGAGCTGATCTTATAATTGAGAAAATGAACCCCGAACTTCAACCCATGGAATACAATATAACATTGGTAAATGTGATTCAACTTTTGGCCATATTTTGGATACGATGTTAG
- Protein Sequence
- MSARARVCVSRRDLVKSCTFLCVRAKENERERDDDEQAYIIIMLHYSRRETCACAAASRGRVPPDDDLVVFYARVCVRERAYRCDRVYTAWYRLAGAFRENDGGGGGAPRMIDSRQRCRDSLLARKYKKKKIGCRPYVNYAVSTIEDALKTIVDGELSVLAANKRFSIPYGTLYNRFHGEHVKTTGGQTVFSKEEEKSILSAVIKCGDWDFPLSLMDCAISVNFCDTRYTQKSIFQEDKIINSDEENDYVRIPDKLDCPLCFTGCLPSESDGAHKCVVCGIPVHPLSTCSRNISGKDNIRVCFSCWILEDDTCTNNNNCKVSEHLIEERTAVESWNRKSQRKNKSYLVSNPHLRHLDLSDSKKITSLPILKNGSRSTELKNVKSNGVQGRIVLTNTCAXCAFDSLASLLMVAYCDSHKYSEKVDSIGEHRFFNFISKIVRYGISCSTYSERADLIIEKMNPELQPMEYNITLVNVIQLLAIFWIRC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -