Basic Information

Insect: Mythimna vitellina
Gene Symbol: ush
Assembly: GCA_949316375.1
Location: OX438691.1:3400651-3403356[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0072 0.66 11.3 0.2 1 20 127 146 127 148 0.94

2 9 8.9e-05 0.0081 17.3 0.9 1 23 185 207 185 207 0.98

3 9 0.056 5.1 8.5 0.6 3 21 238 256 237 257 0.92

4 9 0.02 1.8 9.9 3.9 2 21 500 519 499 520 0.95

5 9 0.007 0.63 11.3 0.2 3 20 549 566 547 568 0.91

6 9 1.8 1.6e+02 3.8 0.0 2 23 596 617 595 617 0.93

7 9 0.0088 0.8 11.0 1.3 1 23 623 645 623 645 0.99

8 9 0.46 42 5.6 0.7 1 23 684 707 684 707 0.95

9 9 0.19 17 6.8 0.7 2 20 743 761 743 763 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0072	0.66	11.3	0.2	1	20	127	146	127	148	0.94
2	9	8.9e-05	0.0081	17.3	0.9	1	23	185	207	185	207	0.98
3	9	0.056	5.1	8.5	0.6	3	21	238	256	237	257	0.92
4	9	0.02	1.8	9.9	3.9	2	21	500	519	499	520	0.95
5	9	0.007	0.63	11.3	0.2	3	20	549	566	547	568	0.91
6	9	1.8	1.6e+02	3.8	0.0	2	23	596	617	595	617	0.93
7	9	0.0088	0.8	11.0	1.3	1	23	623	645	623	645	0.99
8	9	0.46	42	5.6	0.7	1	23	684	707	684	707	0.95
9	9	0.19	17	6.8	0.7	2	20	743	761	743	763	0.92

Sequence Information

Coding Sequence: ATGCCTCGACTAGTGAAGCTGCATCTGACTGACGTCGACAGATACGAGACGAAACGTGAGGACGAGGAATGGGGAAACGAGAGCGAGGCGATGCCCGGAGAACCTCGCACGCCGAGCTCAGAGGGCGAGCGCGCCGCGTCCAGCGGGGGCGTGTCACCCGCGTCGGGAGGCTCGCCTGCCGCGTCGCCGCCACGCTTACGCCTCAACACCAGCCTGGCCACAGACCCTGCGCTGGCCCCGCAGGCGACTATTCTGAAGCATGAGCCACCATCACCATCTCCGCCGCCACCACCTGCTGCGGCACCGCAAGCACGAGACTACCTTGCCCTAACGGCGGCAGCCTTCCCAGGGCTATTTCCTGCGTCTGGTCCGCCTAGTTACATATGCAAGCCATGCGGCATTCGCTACTCGTCTCTCAGTACATTGCAAGCACATCAAGAACATTACTGTTCAAATAGACTGCCGAAGCCAGCAGAGCCGAATGCTACATCCGATCCAGCTGTCGATGAGTCAAGCAGTGAGGCAAAGACACCTCGTCCTGCTGGCAAGCAATATGCTTGCACATACTGTTCGTATAGCGCCGACAAGAAAGTTAGCTTGAACCGTCACATGAGGATGCACTCCTCGTCCCCGGTGAGCAGCGGTACCCCGGCACCGACACCGACCTCAAACGGAGAAGTCACGGAGGGACCTCCGGTACAGGATCGTTACTGCGCTGATTGTGATATTCGCTTTAGCTCCATCAAAACTTACCGAGCACATAAACAACACTATTGCAGCACAAGACAAGTTGTAAAACAAGCCTTGGCAGCTGCCCGAGGAGGCTCTGCGACATCAGGGTCCGCGCCACCTTCACCTGGAGCCACGCCTCCAGCACAGAACCAGAACCAGTACGCTCTCGCGTTACCTACGAATCCCATTCTCATAGTACCCTACTCGCTATTGCGGGGCGCCAGTACTTTACCAGGTACGACGCTGCCTGACCCTGATACGCCATGCTTTCTGCTACCAAATGGAACTTTCCAGCCAATAAGTCGGGCGTTATCAAACATGAACGCAGAAGGAAAAGAAAATGAGGTTTTAAAGTCTGCCAATAGGCCTCGAGAGCAATCAAGAGAAAGTGGTGCGACACCTCTAGATCTCAGTGTACGGCGTTCACCAGAATCTGTGGTTACTGATGAGCATGAAAAAGAGAACAGACTACGGTCAACAACTCCCGAGCAAATCGTATGCGCTCCATCGCTCCCAGGATCTCCAGGAACACCATCTCCCTCTCGGCGGTCTTCATCACCAAGCGCAGAAAGTTCACCAAAGCGACGGAGATTGAACTCTAGAGGGCCAACTCCAAAACCTCCGAGCGTACCGTCGCCTCCTGAAGAGAAATACACGCCAATAGTTCCTCCTGCAATTCTGCCTCCCGCTCTAGCATTGCGTCTCGCATCAGAACTGCCAGTTACCGCGGCATCTCCCCAAGTGCTTGTGAAGCAGGGGGTATCCAAGTGCAAAGAATGTAACATTGTGTTTTGTAAATACGAGAACTACCGGATTCATAAGCGGCATTACTGCTCTGCGGGTGGCGGGGAGGAGCGCGCGAGTCCTGCGCCTCCAGAGCCTGGTCCACCGCCACAGTACCGTCAGCTGATCTGTCTGGCATGTGGGATCCACTTCAGTTCGCTGGACAACTTGACGACTCATCAATCTTTCTACTGCACCAAGCGGGAGACTCGGTCTCCTAGAAGCGTCCCTGAGGCTCCTCGGCCTACTTCAGGGTCTGAGGGTGGGTGGAAGTGCCCCTGCTGCGACGTGGTGTCCCCGACAGCGGCCGCGGCGCAGCGTCACATGGACGCACACGCCGGCGTGAAGGCGTTCCGCTGCACCATCTGCCGGTACCGGGGCAACACCCTGCGAGGCATGCGCACGCATATCCGCATGCACTTCAACAACAAAAAGCCTGCTGATTTACAGGAGGAGAGCTATATCGCCTGCGTTCTTGAAGAGGACAGCCGTGAGGCGACGTCCCCAAGCCCAGCTGTGGGCGGAGAACGCGTCCACCGCTGCGGCAGCTGTGCCTACACCTCCACTTACCGCGGCAACGTCGTTCGCCACGCACGTCTCGTTCACGCTACCGACGAGCCAGAGGAAGAGCAAACATCTCCCGTTCCTCCTCCTCCAACCACAGTTGATATCAAAAAGGAACCGGAAACGGAACTCGAAGAGACCCCCAACTACTGCAAGTCTTGTGACATCTCGTTCAAGTATGTGAATACGTACAAGGCACATAAGCAGTTCTATTGTACCGCCAATAATCAGGACGCGACGGCTAATAACAACGTGCCCACCCCACCAAGGGTTACTGACACGCCTGTACTATGA
Protein Sequence: MPRLVKLHLTDVDRYETKREDEEWGNESEAMPGEPRTPSSEGERAASSGGVSPASGGSPAASPPRLRLNTSLATDPALAPQATILKHEPPSPSPPPPPAAAPQARDYLALTAAAFPGLFPASGPPSYICKPCGIRYSSLSTLQAHQEHYCSNRLPKPAEPNATSDPAVDESSSEAKTPRPAGKQYACTYCSYSADKKVSLNRHMRMHSSSPVSSGTPAPTPTSNGEVTEGPPVQDRYCADCDIRFSSIKTYRAHKQHYCSTRQVVKQALAAARGGSATSGSAPPSPGATPPAQNQNQYALALPTNPILIVPYSLLRGASTLPGTTLPDPDTPCFLLPNGTFQPISRALSNMNAEGKENEVLKSANRPREQSRESGATPLDLSVRRSPESVVTDEHEKENRLRSTTPEQIVCAPSLPGSPGTPSPSRRSSSPSAESSPKRRRLNSRGPTPKPPSVPSPPEEKYTPIVPPAILPPALALRLASELPVTAASPQVLVKQGVSKCKECNIVFCKYENYRIHKRHYCSAGGGEERASPAPPEPGPPPQYRQLICLACGIHFSSLDNLTTHQSFYCTKRETRSPRSVPEAPRPTSGSEGGWKCPCCDVVSPTAAAAQRHMDAHAGVKAFRCTICRYRGNTLRGMRTHIRMHFNNKKPADLQEESYIACVLEEDSREATSPSPAVGGERVHRCGSCAYTSTYRGNVVRHARLVHATDEPEEEQTSPVPPPPTTVDIKKEPETELEETPNYCKSCDISFKYVNTYKAHKQFYCTANNQDATANNNVPTPPRVTDTPVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00050390;
90% Identity: iTF_00148050;
80% Identity: -