Mvit025966.1
Basic Information
- Insect
- Mythimna vitellina
- Gene Symbol
- -
- Assembly
- GCA_949316375.1
- Location
- OX438713.1:1691473-1692714[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 6.6e-07 6e-05 24.0 1.3 1 21 107 127 107 128 0.94 2 10 3 2.7e+02 3.0 2.6 3 23 134 154 133 154 0.88 3 10 0.018 1.6 10.1 0.3 1 23 159 182 159 182 0.90 4 10 0.00043 0.039 15.1 3.8 1 23 187 209 187 209 0.97 5 10 2.6 2.3e+02 3.3 4.5 1 21 212 232 212 233 0.94 6 10 2.2e-05 0.002 19.2 1.1 1 23 247 270 247 270 0.95 7 10 2e-05 0.0018 19.4 1.7 1 23 276 298 276 298 0.98 8 10 3.7 3.3e+02 2.8 0.1 5 23 308 326 306 326 0.91 9 10 0.61 56 5.2 2.8 1 23 332 355 332 355 0.91 10 10 0.0015 0.14 13.4 0.9 3 23 365 386 364 386 0.97
Sequence Information
- Coding Sequence
- ATGGAGTTGGACCCTGCGCTCCCCTGCGGCTTATGCAGGAGCTGTTCAGACGACACCGTCGCTGCCATAACTTTCAAGAACCTCTGTGCAATGTCGGCACACCATTGGGCTGAAGCTTCCAACTATATCTCACAACCCCCTAACCCCACAGAAGATGATAAAGCCTTCTTCATCCTCTATAACGACGAAAAAACCATAGTGAAAGACCAAATAGCTAGAGTCCCTACCACAAAGGATGCTGAAGACAGGCTTAATATGAAGTGGGTTAAACCTGTAAAAATTCGAAAACCCAGGCGACATGGCTTAATAAAAGAATCTTGTAAATGTCCTGATTGCGGCAAGAAATTTTCAACGCCTGATTATTTGAATTACCATCTTAGAAACACGCTCAAGAGGGCTTGTAGACGATGTCGAATGGTTGTACATAAGAAAAAATTGGCCAGGCATCTGCTGACCAACCATAACATACAATTATTTGAATGTAATATCTGTAACAAATTGTTTGAAGAGGAAGACTTTATGAGACAGCATTATGATGAAGCTCACGGCAAGCTAATGCACACTTGCAGTCATTGTGGCAACAGTTATGTGAATGAAAGAGCACTAAGAGCTCATATTCACTCCCACTCGCTGTTCCACTGCAGTTCCTGCAACATGAGCTATGACAACGTCAAATGCTTCAAATACCACCAACAAGTCTGCGAATTCTTGCACCGACCATCAGTTGAATTCAAATTCTTTACTTGTGATCACTGTGGCGTTACGTACAACCGAAAACCATCGCTAAGAATACATATCATTCAAAAACATTTGAACGTTCTGCCTTACGTTTGCCAAACTTGCGGAAAACGAACTTCTACGTTAGCTCACTTGAGATCGCACGAGAAAGTCCATAAAACTGAACGTAACATTTTCCAGTGCGTTTGTGGTGCTCAACTAACAACGGAACTAGGTTACCAGTTACATCAGAGGATACATACTGGAGAACGACCTTACAAATGTGAGCATTGTGGAGATAGATTCCTGTCTTCTTCAAGGAGATTAGACCATATAAAAAGGCGCCACAGAGGGGCGAAAGACTTCAAGCATGGCTGCGAGCAGTGTTCAGCCCGTTTTGTCCGACCATGTGAATTAAAGAAGCATTATCTGTCAGTCCATTACTCAGTGGTTGAAGTGAAACCTGCAAAAAGAGAGATCAATCCTATTACAAGACGTCTCAGGAATACGATTGAGAAAGATTGA
- Protein Sequence
- MELDPALPCGLCRSCSDDTVAAITFKNLCAMSAHHWAEASNYISQPPNPTEDDKAFFILYNDEKTIVKDQIARVPTTKDAEDRLNMKWVKPVKIRKPRRHGLIKESCKCPDCGKKFSTPDYLNYHLRNTLKRACRRCRMVVHKKKLARHLLTNHNIQLFECNICNKLFEEEDFMRQHYDEAHGKLMHTCSHCGNSYVNERALRAHIHSHSLFHCSSCNMSYDNVKCFKYHQQVCEFLHRPSVEFKFFTCDHCGVTYNRKPSLRIHIIQKHLNVLPYVCQTCGKRTSTLAHLRSHEKVHKTERNIFQCVCGAQLTTELGYQLHQRIHTGERPYKCEHCGDRFLSSSRRLDHIKRRHRGAKDFKHGCEQCSARFVRPCELKKHYLSVHYSVVEVKPAKREINPITRRLRNTIEKD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01340693;
- 90% Identity
- iTF_01029664;
- 80% Identity
- -