Mvit026151.1
Basic Information
- Insect
- Mythimna vitellina
- Gene Symbol
- -
- Assembly
- GCA_949316375.1
- Location
- OX438713.1:5653552-5670631[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.62 57 5.2 0.8 1 23 236 258 236 258 0.94 2 16 1.7 1.5e+02 3.9 0.1 2 22 287 307 286 309 0.88 3 16 0.0099 0.9 10.9 0.3 2 23 330 352 329 352 0.94 4 16 0.0029 0.26 12.5 4.8 1 23 357 380 357 380 0.96 5 16 0.0011 0.1 13.8 1.2 1 23 385 408 385 408 0.96 6 16 0.36 32 6.0 0.2 2 23 411 433 410 433 0.92 7 16 0.47 43 5.6 1.0 2 21 440 459 439 460 0.92 8 16 0.14 13 7.2 0.4 1 23 519 542 519 542 0.90 9 16 0.012 1.1 10.6 0.2 3 23 571 592 569 592 0.94 10 16 0.27 25 6.3 0.2 3 23 616 638 615 638 0.91 11 16 0.00054 0.049 14.8 0.6 3 20 645 662 643 666 0.90 12 16 0.041 3.7 8.9 0.2 1 23 671 694 671 694 0.94 13 16 7.4e-05 0.0067 17.5 0.5 2 23 700 722 700 722 0.95 14 16 0.00034 0.031 15.5 4.0 1 23 726 749 726 749 0.97 15 16 0.00056 0.051 14.8 2.3 1 23 755 777 755 777 0.98 16 16 0.051 4.6 8.6 1.2 1 23 783 806 783 806 0.91
Sequence Information
- Coding Sequence
- ATGGAGTTCGACGAGATAGTGGTGAAGGAGAGCCCCGGGCTGTGCCGGTGTTGTCTCTCTGAAGGATGTTACAAGGATCTGGGGACAGAATATAGCTGGATGAATGAAACCGAAGTTTATGCGGATATGCTGCTTGAATGCTTTGATATTAGCATTACTCAGCACAATGAAGGTCCCAATGGTCCTAACCGGCTCATCTGCGAAGTCTGCATCACCCGGCTGCGGGACGCTTGCAACTTCAAGAAACAAGTCATGGATTCGGAGAAGAAATTCATTGATATGATGGGCAGGGGAGAATTTAGGCCTAAGATGCTTATCTACCAAGCGCAGATGAAGTGTGAAGGTGCAACTGCTACAGAAGACCCAGTAGAAGATGCAGACATTGAATATCTTGAAGATGACATTGATTTTGGTGATGATGAACTGAAAGATGATTTAGCACAGCCTTCAGTGTCAGAGGTTCCTGTAGCGTTACCCGTCAAGGGTAAACGCGGCCGACCCCGCAAGAACACACCAGTGAAGCCAGAGAAGAGAGCGAAGGTCGCCAAGCTCGACGACAAGGCCAGGACATCGAAGGCTGTTGCTAAAGGTAAAAAACCGAGGAAAAGCAAGGAAAATAAAGAATCTTCTTCGATGAGGAGGCGACGGAACCTACAAATTCTATTCAACAACACATCTATCATACCTTTTAAATGGCGGGGGAAGTACTTGTGTTTCTTTTGTAGCAAAGACGTCGCCGAATATACTGAGTTGCGAAATCATACGAAAGAACACGGCAACTGTTCCATAAACGACCATTCCCTTAAGGTCCTCAAAGGAGGAAAAAACAtggaaattaaaatagatatttcaTTTATCACTTGTGAAGTATGCACGGAAACATTAGCTACTTTCGATGAAATCATCAATCATTTATTCGACAAACATGAACTTGAGTACGATAAGGAAGTTGAAATGGCTATAGAGGAATACAAGCTTGCTGATCTCAGTTGCACCGGATGCTCTGAAAAGTTCACGTACTTCGGTTACCTAGTATCTCATGTCAATAATATACATCCGAAGAACTGCCACGTATGCGAAAAGTGCAACCAAAAGTTCAATAAAACGAGAGATCTATTCTCTCACATGAAAAACTATCACCGAGAGGGAGGGTACCAATGTGAAATGTGCCCCCAAACCTTcagttcattaaatattttgagaaaACATCGAAATAACAGGCATTTAACTCGATGCAATATATGCAATTTGAAACTACCCTCAGCTGCTTTGAGGCAGAAACACCTCGAATTAGAACATCCAGACGATGGGTCTCTGCAATGTGATGCTTGCTTGAAAGAGTTCCATACAAAACAAGGTCTAAAAATGCACTCAAGGAAATGTAAAGGAGAAGAGCTGTTCGGAATCGCCATCAAAGAAGAACACGTCGCTATGGACTTAGACCTGAACTACGAGGATCGATCCAATAAGACTTGTGTCAAACAAATCAGGCAAAATATAGTTACAGTTATAAACATGTCTACGGCAATaccttttaatttttacaagaataGGTTCAACTGCTTTTACTGCTCCAAAGATTTCCTGGATTCGGAGTTGTTGAGGGAACATGCGGAGTTAGAACACCCTTTTTGCGATATCAAAGCGAAATGTATTAGGAAGTGTAGGGAATCCGTCGCTTGCGTCAAAATCGATGTTTCAAAACTCGCCTGTAAAGTCTGCTATGAGACATTGACCGATTTGGATCATCTAATCGATCATTTAATCGTTAAACACAATGCGAATTATGATAAATCGATAACAACATGTCTACAACCTTATAAGCTAGCCAAAGATAACATGGCATGTCCACTTTGCACTGACGTAGTATTTAACTTCTTCGGAACTCTTTTAAAACACATGAATACAGAGCATACGAACAACAATATAATTTGCGTTTACTGCGGCCAAACTTTCCGCAGGGACCAAAACTTACGTGTTCACATTTGGAGGCATCATAGAGTTGGGAGGTTTAAATGTAACATCTGCGATGCCGAGTGCAACATTCCATCGCGCTTATACATGCACATGGCTGAAGCACACGGCGTTAAAGCCGCTAAATGTCCGAAATGCCCTGAGTCGTTCTCGACGCAGTACGAGAGGcagaaacatttaattaacGTCCACAATTCAGGCCACAAATGCTCTGTTTGTGGCAAACTTTTTACGAGAATGTCTTTCATGAATAACCATTTAAGAAGAACTCATATGAAAGAGAAGAAGTATGAATGTCAAGTTTGTTTTACAAGGTTCTTTAACACCGTGCTATTGAAAAAGCATATGTTGAAGCATAGTGGACAGAAGAAATATTCTTGCGATATTTGTGGAGAACGGTTCTATTGGCGCAAAACTATGAAGACGCATAAAGATAGGCTGCATGCTCGACAGACtaatcctcctcctcctccagCTCCAGTTATACCAACTATACCAAGACGCGAGGGGGTTATAAAGAGATTGTATGACGTTTGCAATGATATATAG
- Protein Sequence
- MEFDEIVVKESPGLCRCCLSEGCYKDLGTEYSWMNETEVYADMLLECFDISITQHNEGPNGPNRLICEVCITRLRDACNFKKQVMDSEKKFIDMMGRGEFRPKMLIYQAQMKCEGATATEDPVEDADIEYLEDDIDFGDDELKDDLAQPSVSEVPVALPVKGKRGRPRKNTPVKPEKRAKVAKLDDKARTSKAVAKGKKPRKSKENKESSSMRRRRNLQILFNNTSIIPFKWRGKYLCFFCSKDVAEYTELRNHTKEHGNCSINDHSLKVLKGGKNMEIKIDISFITCEVCTETLATFDEIINHLFDKHELEYDKEVEMAIEEYKLADLSCTGCSEKFTYFGYLVSHVNNIHPKNCHVCEKCNQKFNKTRDLFSHMKNYHREGGYQCEMCPQTFSSLNILRKHRNNRHLTRCNICNLKLPSAALRQKHLELEHPDDGSLQCDACLKEFHTKQGLKMHSRKCKGEELFGIAIKEEHVAMDLDLNYEDRSNKTCVKQIRQNIVTVINMSTAIPFNFYKNRFNCFYCSKDFLDSELLREHAELEHPFCDIKAKCIRKCRESVACVKIDVSKLACKVCYETLTDLDHLIDHLIVKHNANYDKSITTCLQPYKLAKDNMACPLCTDVVFNFFGTLLKHMNTEHTNNNIICVYCGQTFRRDQNLRVHIWRHHRVGRFKCNICDAECNIPSRLYMHMAEAHGVKAAKCPKCPESFSTQYERQKHLINVHNSGHKCSVCGKLFTRMSFMNNHLRRTHMKEKKYECQVCFTRFFNTVLLKKHMLKHSGQKKYSCDICGERFYWRKTMKTHKDRLHARQTNPPPPPAPVIPTIPRREGVIKRLYDVCNDI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00071771;
- 90% Identity
- iTF_01027650; iTF_01030535;
- 80% Identity
- -