Basic Information

Insect: Mythimna vitellina
Gene Symbol: -
Assembly: GCA_949316375.1
Location: OX438704.1:6701396-6711646[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 7.2e-06 0.00066 20.7 8.5 2 23 31 52 30 52 0.97

2 8 1.3e-05 0.0012 19.9 0.8 1 23 58 80 58 80 0.98

3 8 1e-06 9.1e-05 23.4 1.1 1 23 86 108 86 108 0.99

4 8 0.00039 0.035 15.3 2.8 1 23 114 136 114 136 0.98

5 8 0.00057 0.052 14.7 2.0 1 23 142 164 142 164 0.97

6 8 1.1e-06 0.0001 23.3 0.7 1 23 170 192 170 192 0.98

7 8 1.8e-07 1.6e-05 25.8 0.6 1 23 198 220 198 220 0.99

8 8 0.00016 0.014 16.5 2.5 1 23 291 313 291 313 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	7.2e-06	0.00066	20.7	8.5	2	23	31	52	30	52	0.97
2	8	1.3e-05	0.0012	19.9	0.8	1	23	58	80	58	80	0.98
3	8	1e-06	9.1e-05	23.4	1.1	1	23	86	108	86	108	0.99
4	8	0.00039	0.035	15.3	2.8	1	23	114	136	114	136	0.98
5	8	0.00057	0.052	14.7	2.0	1	23	142	164	142	164	0.97
6	8	1.1e-06	0.0001	23.3	0.7	1	23	170	192	170	192	0.98
7	8	1.8e-07	1.6e-05	25.8	0.6	1	23	198	220	198	220	0.99
8	8	0.00016	0.014	16.5	2.5	1	23	291	313	291	313	0.98

Sequence Information

Coding Sequence: atgtCATTTTTGACATCACGGCTCATTTTCTTTTCATCATTAGCGTTTAAACCAGTTCATTTCCGCCTGCATACCGGCGAGAAACCGTTGAAGTGCAACGAGTGCAACAAGACGTTCAGGCGACACTCGACCTTATGCCAACATATGAAAAAGCACCGTGGCATCCGCAACCACGTGTGCACGGTCTGTAACAAGGGGTTCTACGAGGTCTCCAAGCTGAACGCGCATATGAGGGTGCATACAGGCGAACGTCCGTATGAATGCCAGTACTGTGAGCGCCGTTTCGCCCAGCAGTCGGCCCTGATCTACCACCGACGCACGCACACCGGCGAGAAGCCGTACTGCTGCAAGATCTGCTCCGCGCGCTTCACGACCTCGTCCGCCAGGAACAACCACATGGTCACGCACACTGGTAACAAGAGATTCGTCTGTCCAATCTGCTTCAAAGGCTGCACATCGCGCACAGAACTGCGCGTGCACTCCAGCAAGCATACAGGAGAGAAATTGTTCGAGTGCAACCAGTGCGGGCAGAGGTTCAGCTCGGCGTCCTACCTCGCCGTGCATCGCCGCTACCATACCGGCGAGAAGAAATACCAGTGTCCTGTGTGTGGGAAGGGTTATATAGAGTCAAGTTCCTACAAGAAACACATGAAGACGCACGCCAACAAGTCTGAGACGGAATCGTGTGACAACTCTGCCGACGCCGCGCAGGGGAAGGAACCCTGCCTCAGTGAGCATCAGACTGTGACGGTCACTGAGGACCTGCCTGACTCGCCCAATCAAGTTCAAGCGCAAGTCCAGATCCAAGTGTCGGACAGCCAACAAGCTGTGGCGCAGTCGGAGCGCGCGCCGCAGCAGAAGATCACGCGCTACAAGTGCGCGCTCTGCGTCAAGACCTACATGTACCTGCACAACCTCAAGAAACACATGCTGGTGCATGAACAAGAGAACGGCCGTAACACGGAGCCAATAATATTCCTGCAACAACAAccacagcagcagcaacaacaacagcagcagcaacaacaacaacaacaacaacaacaacaacaacagcagcagcagcagcaacaacagcaacaacaacaacaacagcagcagcagcaacaacaacaacaacaacaacagcagcagcaacaacaacGCCAGCAACAAGTACAACAACAGCAGCACCAACAGCAACAGATGCAACATCAAGTCCACCAACAAGTGCAACACCACCAGCAACAGCAACAGTTGCAGCAACAAGCCGTGCTACAGGTTGGCAACGTACAACAGCTCGCCGTGCCCATACACGCGCAACATGTTCAACAAGGCATTACTGTGTCTGGAGTACAGAGTCAGCACCCGTACCCGGTGATCTCGTCGGTACAGTCGCTTCAGTTGCAGCAAACACAACAGGTTAACACGCAACAGCCACAGCAACTGCAAGTACAAACCATACAGATACATCCGCAACATCAGCCTATACAGATACATGCTGTGGGCGTCCAGCAAGTGCAACAGCAACAACTGCACGTGGCCACCTCCTCGTGCCAGACCATGCTGCCCAATATATTGCAGCTACAACCAGCCACAGTAGCGGTATCAGGCCTCTCCCAACAAGAGCTGGGCGGCGTGACGCACCGCATCATCCTGCAGCCGCAACCCTCGGCGACGCACCCCGCCGTCTACACCATCCACCACTGA
Protein Sequence: MSFLTSRLIFFSSLAFKPVHFRLHTGEKPLKCNECNKTFRRHSTLCQHMKKHRGIRNHVCTVCNKGFYEVSKLNAHMRVHTGERPYECQYCERRFAQQSALIYHRRTHTGEKPYCCKICSARFTTSSARNNHMVTHTGNKRFVCPICFKGCTSRTELRVHSSKHTGEKLFECNQCGQRFSSASYLAVHRRYHTGEKKYQCPVCGKGYIESSSYKKHMKTHANKSETESCDNSADAAQGKEPCLSEHQTVTVTEDLPDSPNQVQAQVQIQVSDSQQAVAQSERAPQQKITRYKCALCVKTYMYLHNLKKHMLVHEQENGRNTEPIIFLQQQPQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQRQQQVQQQQHQQQQMQHQVHQQVQHHQQQQQLQQQAVLQVGNVQQLAVPIHAQHVQQGITVSGVQSQHPYPVISSVQSLQLQQTQQVNTQQPQQLQVQTIQIHPQHQPIQIHAVGVQQVQQQQLHVATSSCQTMLPNILQLQPATVAVSGLSQQELGGVTHRIILQPQPSATHPAVYTIHH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01085664;
90% Identity: iTF_01029541;
80% Identity: -