Msep028665.1
Basic Information
- Insect
- Mythimna separata
- Gene Symbol
- -
- Assembly
- GCA_030763345.1
- Location
- CM061194.1:1711378-1717410[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0038 0.36 12.4 0.9 2 23 61 82 60 82 0.96 2 10 0.0006 0.058 14.9 1.2 1 23 88 111 88 111 0.97 3 10 0.00011 0.011 17.2 1.0 1 23 123 145 123 145 0.98 4 10 0.0059 0.56 11.8 3.7 1 23 151 173 151 173 0.98 5 10 0.03 2.9 9.6 0.8 1 23 180 203 180 203 0.96 6 10 0.31 30 6.4 0.7 2 22 212 232 211 232 0.94 7 10 0.17 16 7.2 4.7 1 23 333 355 333 356 0.96 8 10 0.09 8.6 8.1 0.6 1 20 364 383 364 385 0.91 9 10 0.016 1.6 10.4 8.6 1 23 417 440 417 440 0.97 10 10 0.00042 0.04 15.4 4.5 1 23 473 495 473 496 0.96
Sequence Information
- Coding Sequence
- ATGTCGGAGTCCAAAGAATCCGAGCAGCATGAGAAGGACATGCTCAACATGTTCGCCAGCGTCTGGGTGAAGGTGGAAGTTGACGAAGATGATGAGAACAACTCGGAGAATTCTCTCCTTGCTGAGCCTGTAATGATAAAGCGAAAGAAGACACTAAACGATCGCAACAAGAGAAGTCTTAAATGTGACATTTGTGACTACACGACCATCTACAAGAACTGTTTGAACTTGCACATCCTTGGTCACACCAACACAAAACCATATTCCTGTGACATTTGTGAATATACCACCAAGTATCCCAACTCCTTACATCGACATGTCATGATACAACATGAACTAAAAACAGCACAGGAGAAACTAGACAATTTCAACTGCGACGAATGCCCATACTCTACAGTTTTCAAATGGAACCTTAAAGCGCATAAAAGAAAGCATAAATTAGAAAAGCAGTATAAATGTGACCAGTGTAACTATGCGACAGCGTACCGCCATAACTATATGAAGCATAGTAAAGTTCATAATAAACAAGAAGTTATATTTAAATGTGATAAGTGTCCGTTTATCACTAAGTATGAAGGGCATATAGCTAGACATCTAGCGAAGATACACAATGAGGTTTCAGAGAAAGCGAACAAATGTGATTTGTGTGATTTCTCAACAAAGGTCCGCTGGAGATTGAACGTTCATAAACGGAGAAGCAAACAAAAAGATGTGATAAAATGTTCGAGCTGTGAATTTGAAACGAGTTACATGTGTGAGTCGAAGAAACATAAGTCAATACATTATAATGATACTACTGATTACCAATTGAATGAGAGCAGCGGTGAAATTACTTTTGATGCTCCTGAATTTCAACCGGCACCAAATCCTGTAGTCAATATCGATGATCCTAATATAAGCGTTCACGAGAAATGTAACAATTACATGTTGGATCCTGAGTGTGAGGTAGACTGGAAAAGCATTCGAGTAATAGATTCAAAATGTAAAGAAAGACCATACCAATGCGTAATGTGTAGATACACATCCCGTTTTAAGGCTTCAGTACAGCGGCACTTCCAAAGACATCACACCGGCAATGAGAACCGTCCTTACAAATGTGTCAACTGTGATTTTTCAACCAAAACTAAAGATCAGATTGCGTTGCATAATAAACGTAGTCAATCGGAATCAGAGTTAACTTGCAGAGAATGTCCGTTCACCACGTTATTCAAATGTCAATTTGTAACGCATCAAAAATGTCACTATCCACATAAGTGTACCGAGTGTAATTACTCCTGTAAACACAAATATGAAATACAGAAGCATGTGTCAACTACGCATATGGGAAACGGCTTGAAGTGTCGGTTTTGTGATTTTAAAGCGTCCAGAAAGGAAAGTTTACTTTGCCATGAAACTATACATACGGGTAACAAACCGTTTAAATGCAAGTATTGTGATTATAAATCTGTGAGAAAATCGCTATTAGATAACCATGTGAAACGGCATCACAGTGATGTTTGTCATAATCCAGTGATTGTAGCCGATAATAAGATAGAATCTTTAAAAATACCTGTCGGAGATAAAGTTATAACTTCAGAGATTATTCAGAATATAAGAGAACAAAATATATCGTTAGAAGATATTTTAGATTCGCCTGAAGTTAAAGATTTTGCGTCTATTATGAATTCTCCACAAAAAACGAACAGTGGACTTCTATAG
- Protein Sequence
- MSESKESEQHEKDMLNMFASVWVKVEVDEDDENNSENSLLAEPVMIKRKKTLNDRNKRSLKCDICDYTTIYKNCLNLHILGHTNTKPYSCDICEYTTKYPNSLHRHVMIQHELKTAQEKLDNFNCDECPYSTVFKWNLKAHKRKHKLEKQYKCDQCNYATAYRHNYMKHSKVHNKQEVIFKCDKCPFITKYEGHIARHLAKIHNEVSEKANKCDLCDFSTKVRWRLNVHKRRSKQKDVIKCSSCEFETSYMCESKKHKSIHYNDTTDYQLNESSGEITFDAPEFQPAPNPVVNIDDPNISVHEKCNNYMLDPECEVDWKSIRVIDSKCKERPYQCVMCRYTSRFKASVQRHFQRHHTGNENRPYKCVNCDFSTKTKDQIALHNKRSQSESELTCRECPFTTLFKCQFVTHQKCHYPHKCTECNYSCKHKYEIQKHVSTTHMGNGLKCRFCDFKASRKESLLCHETIHTGNKPFKCKYCDYKSVRKSLLDNHVKRHHSDVCHNPVIVADNKIESLKIPVGDKVITSEIIQNIREQNISLEDILDSPEVKDFASIMNSPQKTNSGLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01231145;
- 90% Identity
- iTF_01027881;
- 80% Identity
- -