Basic Information

Insect: Mythimna separata
Gene Symbol: -
Assembly: GCA_030763345.1
Location: CM061179.1:17654025-17660203[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 1.1 1e+02 4.7 0.1 3 23 113 133 111 133 0.95

2 13 0.003 0.29 12.7 0.2 2 23 137 159 136 159 0.95

3 13 1.3 1.2e+02 4.5 3.9 2 23 210 232 209 233 0.91

4 13 0.0014 0.13 13.8 0.5 2 23 390 412 389 412 0.95

5 13 0.0039 0.38 12.3 0.1 1 20 420 439 420 441 0.94

6 13 0.0011 0.1 14.1 1.2 3 23 452 472 451 472 0.97

7 13 6.5 6.2e+02 2.2 1.5 1 23 488 511 488 511 0.84

8 13 0.0043 0.41 12.2 2.8 1 23 520 543 520 543 0.94

9 13 9.2 8.8e+02 1.7 0.9 8 23 593 609 585 609 0.88

10 13 1.1 1e+02 4.7 0.1 2 23 621 643 620 643 0.83

11 13 3.2 3e+02 3.2 1.9 1 23 648 671 648 671 0.93

12 13 7.4e-05 0.007 17.8 1.7 1 23 677 699 677 699 0.96

13 13 0.17 16 7.2 0.7 1 10 706 715 706 719 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	1.1	1e+02	4.7	0.1	3	23	113	133	111	133	0.95
2	13	0.003	0.29	12.7	0.2	2	23	137	159	136	159	0.95
3	13	1.3	1.2e+02	4.5	3.9	2	23	210	232	209	233	0.91
4	13	0.0014	0.13	13.8	0.5	2	23	390	412	389	412	0.95
5	13	0.0039	0.38	12.3	0.1	1	20	420	439	420	441	0.94
6	13	0.0011	0.1	14.1	1.2	3	23	452	472	451	472	0.97
7	13	6.5	6.2e+02	2.2	1.5	1	23	488	511	488	511	0.84
8	13	0.0043	0.41	12.2	2.8	1	23	520	543	520	543	0.94
9	13	9.2	8.8e+02	1.7	0.9	8	23	593	609	585	609	0.88
10	13	1.1	1e+02	4.7	0.1	2	23	621	643	620	643	0.83
11	13	3.2	3e+02	3.2	1.9	1	23	648	671	648	671	0.93
12	13	7.4e-05	0.007	17.8	1.7	1	23	677	699	677	699	0.96
13	13	0.17	16	7.2	0.7	1	10	706	715	706	719	0.94

Sequence Information

Coding Sequence: ATGTTTTCGGATGACTCTGATGATGAACCACTGTCCGttatagcaaataaaaaatttgaCCCAGAACAACATGAGGAATCAACGTCTGATTCTTCGGAGtcccaaaataaaaagaaaaggaagttaccACCGCCTAAACGGCTCTCGATTACTATAAAGCTTCAACGTCCAAAGCCTGCTGAGCCGCCACCGGTGAAAGAGCGACCAGAGGATGTGTGGCTCTACTTAAAAGATCTCAACCCTTCGGGACCCTACAGTTGCTTACTCTGCCCAGACTGGTTCATAAATAGATCCAAAATTATTCTTCATTACgtcataaatcataaaaaagacTTCTGTGGTGTTTGTAGGTACTTCGTGCCAGATAGGGAGGCCTGGGCAAAACATTTGAAGTTTCATACTCCCTGGCCGTGCTCACAATGTGTTGAGAACTTTGAAACTGAAGGAGAGCTCCGGAATCACCTCAAGTCTCGTCACAATCTCGTACATTGCAGACTCTGTCACTTCCGTGTACTTGACGGTGAACTGTACCACTCTCACTTGTTCCAAAAGCACAATGTTTCTAATGTGACAAATAAAGATGAAGACAATCTTTGGGAGTTAGAATATGATGGCACCTCAAACTTCCTATGTTTACTTTGTAACAAATCCACCAACTCAACTAGGACATTCTTCAACCATTACATGGGCTATCACCACTTCACTCTCAAATGCTTCGCTGCTCTGTTGTCAGGTAGAGACATACCATTCTCAGTGTATGGTGCTGATCTCAGAGCCGAGTTTGTTGAAGAGCAACTAAAACACCATGCAAGATATGGCTATGTAGATTCTGAGTTCAGACCTTCTGACTGTGTTGTAGTAGATGACCCAAACCAAACTAGAGATTTACTAAAAGTCCTCATACcagaaataaaacaagaaatagAGACCCCAGATGAAACTAATAATGATGATGGAACTGCAAAGGccaaagatgatgatgacgatatttACAAAAGCTACAATGGCATTGATGATTTCGATGTCACTTTAATGGAACTGATAATTGTACAGAAGTGTTATCATGATTATATTAGTGATGTATTATCAGATATAAATGCAAATTCGTTTTTTGAGTACTCAGATCTTGATTATGAGCATCTCACAACAGAAGTGGCAATGGATATAGTTTGTACACTGTGCAGTATCCGGTACAGTACACTGTCAAATTTTGCCAGTCACATGTTCAAAATGCATTCCATAAAGTCCTTGCCGGTATTCTCATGTAGAGTGTGTGCAACTACTTTTGACACTCAAAATGAGTTGGAGAATCACATATCAAATGAGTTGGGAGAATTTGAGGATCTGTGGTTATGTCAGTTTTGTGATAAAGAGTTTGATGACAGGGAGAACACACGGCGACATATGACTGAACATTGGGAGCATGCAGAATATGACAACTGTTTCAGTCCACATATAGGTTTCAAATGCCGTTATTGTCCGACATTGTTCTGGCATGAAACGGACAGAGAAACTCACCAAGTGCGAGCACATTTCTTCAATCATAAAGATGCTTTTTACAAGTGTGAGACCTGCAATGAAATATTTAGTGATAAGGTCTGGTATGTCCACCACCACTTAGAGAAGCACAGCACTCCAGAGAAGACATTGCTGTACCTGCTCAAATGTTCCCTCTGCTGCGTGGTGATGCCGAGTATAGAGGAGATGAGAGGCCACTTCAACTGCGAACACCCTGAGGCTAGGAAGGTGTTCTGTTCCTTAGACGCCTGTCAATATAAGCCTTTGTGTCACCGGAAGTCATTTAAACTACATGTTCGGACGATGCACTCATCTCGTGGCTCCCGCCCGGAGCCTTCAGTGGAGTGCGTGGTGTGCGGGCGCGAGTTCGGCAGCTcgcgcgcgtgcggcgcgcaCATGGCGCAGGCGCACGGGCCCGGCAAGTTCAAGTGCAAGCTCTGTAGGGAGGTGCTGCACACTATGGACGAGAGAAAACTGCACTACCTCATAAGCCACCCCGGGCAGCACCCGTTCGACTGCTCGGAGTGCGGCAAGTCGTTCCAGTACAAGTCCTCGCTGTACATGCACAAGCAGGAGCATCTGCCCAACAAGCAGAACTATACCTGTACCTTCTGTGGAAAGACTTTTCTGCGGTCCATCTTCGTAACACATTTTACTCGCCCCGCTACATAG
Protein Sequence: MFSDDSDDEPLSVIANKKFDPEQHEESTSDSSESQNKKKRKLPPPKRLSITIKLQRPKPAEPPPVKERPEDVWLYLKDLNPSGPYSCLLCPDWFINRSKIILHYVINHKKDFCGVCRYFVPDREAWAKHLKFHTPWPCSQCVENFETEGELRNHLKSRHNLVHCRLCHFRVLDGELYHSHLFQKHNVSNVTNKDEDNLWELEYDGTSNFLCLLCNKSTNSTRTFFNHYMGYHHFTLKCFAALLSGRDIPFSVYGADLRAEFVEEQLKHHARYGYVDSEFRPSDCVVVDDPNQTRDLLKVLIPEIKQEIETPDETNNDDGTAKAKDDDDDIYKSYNGIDDFDVTLMELIIVQKCYHDYISDVLSDINANSFFEYSDLDYEHLTTEVAMDIVCTLCSIRYSTLSNFASHMFKMHSIKSLPVFSCRVCATTFDTQNELENHISNELGEFEDLWLCQFCDKEFDDRENTRRHMTEHWEHAEYDNCFSPHIGFKCRYCPTLFWHETDRETHQVRAHFFNHKDAFYKCETCNEIFSDKVWYVHHHLEKHSTPEKTLLYLLKCSLCCVVMPSIEEMRGHFNCEHPEARKVFCSLDACQYKPLCHRKSFKLHVRTMHSSRGSRPEPSVECVVCGREFGSSRACGAHMAQAHGPGKFKCKLCREVLHTMDERKLHYLISHPGQHPFDCSECGKSFQYKSSLYMHKQEHLPNKQNYTCTFCGKTFLRSIFVTHFTRPAT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00072307;
90% Identity: -
80% Identity: -