Msep017867.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Mythimna separata
Gene Symbol
-
Assembly
GCA_030763345.1
Location
CM061182.1:14730026-14741985[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 8 0.24 23 6.7 0.6 2 23 1135 1157 1134 1157 0.92
2 8 1.4 1.3e+02 4.3 2.6 3 23 1201 1222 1200 1222 0.94
3 8 0.002 0.19 13.3 0.9 3 21 1242 1260 1240 1261 0.94
4 8 0.0031 0.29 12.7 6.4 1 20 1269 1288 1269 1291 0.95
5 8 0.006 0.57 11.8 4.2 1 23 1304 1326 1304 1326 0.98
6 8 2.8e-06 0.00026 22.3 3.0 2 23 1333 1354 1333 1354 0.98
7 8 0.0004 0.038 15.5 0.8 1 23 1360 1382 1360 1382 0.97
8 8 1e-05 0.00098 20.5 1.4 1 21 1388 1408 1388 1409 0.97

Sequence Information

Coding Sequence
ATGGAGGGTTTTTGCAGAGGTTGTCTAATAAAATATGACGAACCGATGGAGCTGCTACAATACACAGAGAAAAACAGAAGATTGTTTGTATACTCTACCGGGCTGCAGgtGAAAAGAAATGACACCTTTACATTCCAGTTATGTAAAGATTGTTTCCTAAATATGAAGCAAGCCTGCAAGTTCAAGAAGAACTGTCGCACATCAGACAAACGGTTTCGGAACTATTTAGCTTTAAAAGATGTAGGGGATCCAGTGGATTTCTGCACATTCCTCAAGAATAGTGATGATACTTTAACATTCCGTCTTCCAATGGCAAGCGGGAATAGCACACCAGCTACCCAAAAATGTAGAGATGATGACAATGAATCAACATGCACAAGTATCCGAAACTTCATGACAGACATACTCCAAGGTGAAGAGATGCCGGATACAGAAGCAAGGATCATTAAAGAGGTTATAGAAGAAGAGGCGGATGTACTGGATGACTCGCTGGACTCCCATTGGCTACAGGATGATATGTCTATTGATACGGACTTTAGATTGGATTTTAGTTTCAGTCAGTTCTCGACGCCACGCAGTGTAAATGATGATCACTGTTATACACCCAAACAAAAAGAGGATCAAATGACTTTCGACACTATAAACAccgagaaacaaacaaaaatcctAAAAGACTTCACAAATGCTTTCAAAAGTGATGAAAATCTTGAAGAACTTTGCATTTTTGTAGGCAGTAATGAAAAAAcggaaagtttaaaaaatctcAAAGAATTACGTCCATTTGGTGTAGATGAAATTGATAGCATAAGAAAATCTGAATTAGATGctcttgaaaataaaacaaatctgAAAGAATTAATAACTGATCTTGATATAGACGAAATTGATGGTATGGACACGTCAGATAGTAAAACTGTCGAAACTAATgaacatttgaaagagttacctgaTTTTGGTATAGAAGGTATTAACACTAATTATAAAACGGacactaataataaattaaatgaattatgCGATTTTGGCAAAGATGAGATAGATGGTAGTAGAGAGATGGCAGGCCAAACTAATAAaggtttgaaagagttaataaCTAACCTGGGTATAGAAGAAGTTGAAGGAATGGGAAAATCAGTCAGTAAAAAGACCAAAAGCAAtcagttactaaaagagttagaAGGTAATTTTACCAAAGGTGCAATTGATGATCCTAGAAGCGATCGAAATCTCAAAGAattgtgtgattttagtcatgACAGTTTAAGTGCTACAGAGAAAGCAGATTACAAAATCCTCAAAAAAGATAAAAGTCTAAAAGAAATGTGTGATATTAATTTAGATAGTTTTGAAGAGAATACAACAAAAGATCGAGACATAAGAGAAATATGTGATTTTGATATAGATGATATTGAGAAATCAGAAAATAACTTGGATTTACCAACACTGTCTGATGTCTTAGAAAGAAACAATACAGATATACCTGACTTTGATATGCCCCAATGTGTTATTGGTTCCATGCGGTCTAATAATGAGGATAATGAGGCCAGTAATAGCAGTATCAATATTGAAGCCTTGTTGAAAGGTGCACCAGATAAAGACAGAGTAGATACACCAGATTTTGACATACCAAAAGGTGCAATTGGTTCCATACAGTCGAATAATGATGCTAGTAACAGCAGTATCAATATTGAAGCCTTTTTAAAAGGTAAACCACAAAGAGATAGAATAGATACACCAGATTTTGACATACCTAAAGGTGTAACTCTTTCAGTACAGTCTAGCAATGATATTAGTAATAGCAGTATCAATATTGAAGCCTTTTTAAAAGGTAAACCAGAAAGAGACAGAATAGATACACCAGATTTTGACATCCCTAAAGGTGTAATTGGTTCCATACCGTCTAGTAATGATATTAGTAACAGCAGCCTCAACATTGAAGCTTTGTTAAAAGGTAAACCAGAGAAAGACAGAAGACATACACCAGATTTTGATATACCCAAAGGTGTGATTGGTTCCATACAGTCTACTAATGAGATGAGTAATAGCAGTATCAATGCCTTGTTGAAAGGTGTACCAGAAAAAGACAGAATAGATACACCAGATTTTGACATACTAAAAGGTGCGATTGGTTCCATACAGTCGAATAATGATGCTAGTAATAGCAGTATCAACATTGAGGCCTTTTTGAAAGGTAAACCTGAAAGAGATAGAATAGATACACCAGATTTTGACATACCTAAAAGTGTAATTGGTTCCATACAATCTACTAATGAGATGAGTAATAGTAGTATTAACATTGAAGCCTTGTTAAAAGGTACACCAGAAAAAGAGAGAATAGATACACCAGATTTTGACATACCTAGAGGTGTAACTCTTTCAGTACAGTCTAGCAATGATATGAGTAACAGCAGTATAAATATTGAAGCTTTGTTAAAAGGTAGACCAAAAAAAGACAGAATAGATACACCAGATTTTGACATACCTAAAGGTGTAATGGGTTCCATACCGTCTAGTAATGATGTTAGTAATAGCAGTATTAATATTGAAGCCTTGTTAAGAGGTAAACCAGAAAAAGCGAGAATAGATACACCAGATTTTGACATACCTAAAGGTGTAACTCTTTCAGTACAGTCTAGCAATGATATTAGTAATAGCAGTATCAATATTGAAGCTTTGTTAAAAGGTAAACCAGAAAAAGAGAGAATAGATACACCAGATTTTGACATACCAAAAGGTGTAATTCTTTCAATACAATCTAACAATGATGTTAGTAATAGCAGTAGCAACATTGAACATTTGTTAAAAGGTATAGCGGAAAGGGATAGGATAGGTACACCAGATTTTGACATACCAAAAGGTGCAATTGGATCAGTACAGTCTAATAATGATGTTAGCAACAGCAGTATCAATATTGAAGCCTTGTTAAAACACAGGACATGTTCAATAGATAAAAACTTAGAGGAGGCTTTGAAAAATACTGATAGTGAAAAATTTTCTTTGGAGGAGTTACTTGTTTCACCACCAGTGTTCGCAGCCAAATCAGCAGCTTCTACACCGACcataacaaatatattatttggTGAAAACCTTGACACTACCGGTAAGAAAATCGAACAATCTCTCGAATCATATCACGAAATATTTGAAGAATTCTTCCAAAATGACACTAAAGAATTTAACCCAGAAGATATTATAAGAGAAAATGGAGGATTTAAAGAAGGAGATTGGAAAAAACCTCTTTCTGTTAGTGATTTTGAACTCGCTAATAAAGAGAATGAGtcgaaaaatattgaaatggaAATACCTATTGATGATATTGATAAaactgctaataaaataaagacagAACTAGAACACATTGCGCATGATGAAGAAAATGACAaatttaacataaaatatttgtacTGCAAATTGTGTGATATAAGGTACGACACTAGCCGAGCGTTCAGCGTACATTTCGCGAAAACACATAATATCAAAATCGTAAAACCAAGGAAATCGAACAAAAAGAATAAAgaggttacaaaaataaagacggaAGATAGTATAAACATCTACGATACACCTGCTAGTGAAAAATTCGATTTAGAAAAGTCGTTATGtaaattatgtaatataaaGTATGAGTCCAACAGAGCATTATGCATACATTTCACGAAAACTCATCGTATTAAAATCGAGAAACCGAAATGtgttaaagtaaacaaaaatcaTAAGTTACTGTGTAATCATTGTGGAAAGGAAAGCAGGGATCAAACAAATTTCGCTAGGCATGTTAAAAAATGTGGGCAAAAAGCAATGGTTTTCGAATGCGATCGTTGTCACCTAGAATTTACGACGCAGTCTCATTTAGAAAGGCATCAGACCTGCCACACGCaaatgaagaaaaagaaagagaCTGGAAAGGAATTCGTATGCACAATTTGCGGCAGGATTCTGCATAAACATTATAACTTCGTAATGCACATGAGGAGACATACGAAAGACTACAGCGCTCAATGTGAACATTGTGACAAGAAATTTTATACCCAAGCAGATTTGAACACTCACTTGAGgacgcacactggtgagactCCATTTTCGTGTAAATTCTGCCCGAAATTGTTTACTCGTAAAGATGTTTTATTACGACATGTTCTTATTCATCTTGATGAAAGGCTGTTCCAATGCGACTATTGTAATaagaagtttataaaaaaatatgatttagtaAAACACATTCGAAATGAATCATGTAGGAGGGTAAATAAAATACGTCGGAAAAGACAGAAAACTGACACGAAAGAAATGGACACTGATATACCTGAGGAAGGAGAAGAAAATGAAACTGAAAACGTACAAGAAATCGTAAACGTACAAGAAATTGAAATCGTAAAAGAAGTTGTAAAAGATGTAACAATCATGTATGCAAAAGGCAGTGATGCTACGATCAAAAGTCAGTTACCGTTCTTAGAAACTGAAAGAAGCAATTAG
Protein Sequence
MEGFCRGCLIKYDEPMELLQYTEKNRRLFVYSTGLQVKRNDTFTFQLCKDCFLNMKQACKFKKNCRTSDKRFRNYLALKDVGDPVDFCTFLKNSDDTLTFRLPMASGNSTPATQKCRDDDNESTCTSIRNFMTDILQGEEMPDTEARIIKEVIEEEADVLDDSLDSHWLQDDMSIDTDFRLDFSFSQFSTPRSVNDDHCYTPKQKEDQMTFDTINTEKQTKILKDFTNAFKSDENLEELCIFVGSNEKTESLKNLKELRPFGVDEIDSIRKSELDALENKTNLKELITDLDIDEIDGMDTSDSKTVETNEHLKELPDFGIEGINTNYKTDTNNKLNELCDFGKDEIDGSREMAGQTNKGLKELITNLGIEEVEGMGKSVSKKTKSNQLLKELEGNFTKGAIDDPRSDRNLKELCDFSHDSLSATEKADYKILKKDKSLKEMCDINLDSFEENTTKDRDIREICDFDIDDIEKSENNLDLPTLSDVLERNNTDIPDFDMPQCVIGSMRSNNEDNEASNSSINIEALLKGAPDKDRVDTPDFDIPKGAIGSIQSNNDASNSSINIEAFLKGKPQRDRIDTPDFDIPKGVTLSVQSSNDISNSSINIEAFLKGKPERDRIDTPDFDIPKGVIGSIPSSNDISNSSLNIEALLKGKPEKDRRHTPDFDIPKGVIGSIQSTNEMSNSSINALLKGVPEKDRIDTPDFDILKGAIGSIQSNNDASNSSINIEAFLKGKPERDRIDTPDFDIPKSVIGSIQSTNEMSNSSINIEALLKGTPEKERIDTPDFDIPRGVTLSVQSSNDMSNSSINIEALLKGRPKKDRIDTPDFDIPKGVMGSIPSSNDVSNSSINIEALLRGKPEKARIDTPDFDIPKGVTLSVQSSNDISNSSINIEALLKGKPEKERIDTPDFDIPKGVILSIQSNNDVSNSSSNIEHLLKGIAERDRIGTPDFDIPKGAIGSVQSNNDVSNSSINIEALLKHRTCSIDKNLEEALKNTDSEKFSLEELLVSPPVFAAKSAASTPTITNILFGENLDTTGKKIEQSLESYHEIFEEFFQNDTKEFNPEDIIRENGGFKEGDWKKPLSVSDFELANKENESKNIEMEIPIDDIDKTANKIKTELEHIAHDEENDKFNIKYLYCKLCDIRYDTSRAFSVHFAKTHNIKIVKPRKSNKKNKEVTKIKTEDSINIYDTPASEKFDLEKSLCKLCNIKYESNRALCIHFTKTHRIKIEKPKCVKVNKNHKLLCNHCGKESRDQTNFARHVKKCGQKAMVFECDRCHLEFTTQSHLERHQTCHTQMKKKKETGKEFVCTICGRILHKHYNFVMHMRRHTKDYSAQCEHCDKKFYTQADLNTHLRTHTGETPFSCKFCPKLFTRKDVLLRHVLIHLDERLFQCDYCNKKFIKKYDLVKHIRNESCRRVNKIRRKRQKTDTKEMDTDIPEEGEENETENVQEIVNVQEIEIVKEVVKDVTIMYAKGSDATIKSQLPFLETERSN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-