Msep028936.1
Basic Information
- Insect
- Mythimna separata
- Gene Symbol
- -
- Assembly
- GCA_030763345.1
- Location
- CM061194.1:5983156-5999825[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.7 66 5.3 2.9 1 23 384 406 384 406 0.95 2 9 1e-05 0.00096 20.5 0.2 1 21 453 473 453 478 0.93 3 9 0.00016 0.015 16.7 0.3 2 23 559 580 559 580 0.97 4 9 9.1e-05 0.0086 17.5 4.5 1 23 588 610 588 610 0.97 5 9 6e-06 0.00057 21.2 1.3 1 23 615 637 615 637 0.96 6 9 0.00012 0.012 17.1 1.4 1 23 646 668 646 668 0.99 7 9 1.2e-05 0.0012 20.3 0.7 1 23 674 697 674 697 0.97 8 9 0.12 12 7.6 0.5 1 14 703 716 703 726 0.80 9 9 4.3 4.1e+02 2.8 2.0 1 23 734 757 734 757 0.93
Sequence Information
- Coding Sequence
- ATGTTGCACAACACAGGACCTTACGGTCCAAACGAGGCCCCCGTAAACATGGGAGCACCCATTAACATGACCCCAATGAGTGGTCATATGAATATCAGTCATAACATTAATAATTTGAGCAAAATAGCGCATCAAGGGATCCCGACGCCTAGCGGGCCCTACGACCTGCCGGACTATGCCCAATACAACCACTCTCCCATAGGAATGCCGCCACAAATGGGTCAGTTTTCCAACTACCAACTTGGTTTCCCACAATCTTATATGAATCAAAATGCCAATACAATGAACGACTTACAATTCCCAAATGGTATGTTCCCTATGAATTTAAATATACAGAACGAGCATAACGCTAGTGTGATGAATTATGCTTACGAGAAGAGGATAATGGAGTCAGTTAGACAGGAAAACTATAAAGAACAAAACTCGCTGAAAATACCGTTAAATATACCTCAGATACCAAATAAGAACTACAACAAGCATATTAGCGACGACAATGATTATGTACATAACAGTATGTATGAAGAAACTAACCACAATCTAGATTTAAGTATGAAAACACAAGAGAAACTCCAAATAAATAGCACACGTCGGAAAAACATTGAAAACACAGTGAAACTAATTGAAAATATTCTTATCCACTCGTCTAACCAACCTAGGGAAGTACCACCATTGATTTCAGCACCACCAAAAACTGCTAAAGTAGACGTACCATCGGAtatgacaaataaaaaatcagtgACAGCGTCAACAAAAAACGTAGACTCAAATACGGACCCTGTATCACCAATTCCAACAGATTTGTCAATAAATGAAccgaaaaacaataacaatgaaCCGGAAACTACAGAAAATGAGAGTAATGATAAGCAAAAACCGGAAAACAATGAATTATCTGATGATGAAGAGGTTAAACCTATAGGTATAATGCAGCACTTTATACAGGAAGATGCCGAAGTGACAACGGACACTAGTATTGTTATAAAAGTTGAGAAGGCTAGTTGGGCGGACTCGGAATGCTTTACGCCGTTCTTAAAAGATAGCCACGGGTTTCAGAGGGACGAACACATGAATTATAGAATAATTGAAGGTGATACTAGCATTGCTGAAGCTGTTACTGCTTATAAACAAGACATAAAACCAGAAGGAGTATTCGAATGCCCGCACTGTGCCCTTCTCTTTAAACACCCAAAAAGATTCCTCATACACAACAAATGGCATACGTTCGGCCTAACCAACATTAAAAGAATGGAAATAGCCAAAGTAAGAGAACAAAAGAGGTTTGAGAGAAAAGAGGCGAAGATTATTGAAAGGATGAACTCCAAAGAGGTTACGGATGTTAAAGTGGATGGGAAGGTGTATCCGTGTAAGGATTGTGATAAAGTGTTTAGTGCGAAGGGGAGTTTGAAGAATCATAGGCAAAGTGCTATGATACATAAATCCAAATCCACCATATTTATTGCCACACAACTTTCCTTGAGTGAAGTAGATCGCACACTAGTTTTCAAAGCTACCACGCGGAGGCTCATTGCGGCGCCTCGGGATGCCGCGCTGCCTCTCGCGGCGCCGAACTGCCTCTCGCGGCGCCGCACTGCCTCTCGCGGCGCCGCACTGCCTCTCGCGGCGCCGCACTGCCCCGCGCGGCGCCGCGCTCAaACACATCCAACACGCATAAGAGAATGTAAGATCTGTCACAAAGTGATATCAAGTTGGATGGCCTTACGGGCGCACTTAGCGACGCATACAGCAGACTCGGGCCTCGGCTTTCAATGCAGCAAGTGTCCTAAGAGATTCAAGTATTCGCATTCGCTGGCTAAGCATTCGGATACTCATCTGGAAAAAGTCCACGCCTGTACAGAATGTCCCAAGAAGTTCGGTTCACAAGCTCTCCTGAAGATGCACATGAAGACACACGAGCGCATGCTACGTGGCGCCACCTACCGGTGTACTTACTGCGCGAAAGGCTTCTTTGAGTCCTACAGCTTACAGGTACACGAGCGAACACATCGGAATGAGAGGCCTTACACATGTGACATCTGTAGCACCAGCTACGGAACTAACTCTAGTCTCAAGAGGCACGTCAAAGTGTCCCACAACACAGCGAAGCCCTATCAGTGCTCGGTATGCCGCCGCAACTTCTCCACGGAGTCCATCCGGGACCGACATGAGCTGAGGCTCCACGGGAAGCCCGAGGACTTCAAGTTTCCTTGCAAACAGTGTTCTTCCAAATACTTAAAGctgaaagatctacaaaagcaCGTCTACAAAATGCATCCCAAAGGCAAAAGGAAGACAAAAGAGAAAGAAAGCGACGATTCAGAATAA
- Protein Sequence
- MLHNTGPYGPNEAPVNMGAPINMTPMSGHMNISHNINNLSKIAHQGIPTPSGPYDLPDYAQYNHSPIGMPPQMGQFSNYQLGFPQSYMNQNANTMNDLQFPNGMFPMNLNIQNEHNASVMNYAYEKRIMESVRQENYKEQNSLKIPLNIPQIPNKNYNKHISDDNDYVHNSMYEETNHNLDLSMKTQEKLQINSTRRKNIENTVKLIENILIHSSNQPREVPPLISAPPKTAKVDVPSDMTNKKSVTASTKNVDSNTDPVSPIPTDLSINEPKNNNNEPETTENESNDKQKPENNELSDDEEVKPIGIMQHFIQEDAEVTTDTSIVIKVEKASWADSECFTPFLKDSHGFQRDEHMNYRIIEGDTSIAEAVTAYKQDIKPEGVFECPHCALLFKHPKRFLIHNKWHTFGLTNIKRMEIAKVREQKRFERKEAKIIERMNSKEVTDVKVDGKVYPCKDCDKVFSAKGSLKNHRQSAMIHKSKSTIFIATQLSLSEVDRTLVFKATTRRLIAAPRDAALPLAAPNCLSRRRTASRGAALPLAAPHCPARRRAQTHPTRIRECKICHKVISSWMALRAHLATHTADSGLGFQCSKCPKRFKYSHSLAKHSDTHLEKVHACTECPKKFGSQALLKMHMKTHERMLRGATYRCTYCAKGFFESYSLQVHERTHRNERPYTCDICSTSYGTNSSLKRHVKVSHNTAKPYQCSVCRRNFSTESIRDRHELRLHGKPEDFKFPCKQCSSKYLKLKDLQKHVYKMHPKGKRKTKEKESDDSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -