Msep004646.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Mythimna separata
Gene Symbol
HIVEP1
Assembly
GCA_030763345.1
Location
CM061170.1:17440829-17447063[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 8 0.00019 0.018 16.5 0.6 1 23 149 171 149 171 0.98
2 8 0.00033 0.031 15.7 1.0 1 23 177 201 177 201 0.89
3 8 0.003 0.28 12.7 0.0 1 20 426 445 426 446 0.95
4 8 3.1e-06 0.00029 22.1 2.0 1 23 1196 1218 1196 1218 0.99
5 8 6.9e-05 0.0065 17.9 3.2 1 23 1224 1248 1224 1248 0.92
6 8 1.2e-05 0.0011 20.3 0.9 2 23 1652 1673 1652 1673 0.97
7 8 0.00033 0.032 15.7 1.5 1 23 1679 1703 1679 1703 0.92
8 8 0.0015 0.14 13.7 2.6 1 23 1724 1748 1724 1748 0.93

Sequence Information

Coding Sequence
ATGCCGCTTACACAAGAAAAACGTTTAGACAGTAATTTCTCCAATAACAATGATCACAGCTATCTTCATAAGAAATTCAAAAAAATGGCATCTACGATGTCTGTGTTTCCCGGAAACCTACCGAAAACGGGGGAAACCAGACATAAGGAAACAATAGTATCGTCGACTGCTTGCAGTCTTTCAATATCGAATGGTAGTATCGCAGCAGCCCATCCagaaatagagaaaataaaaacgaaagtcGAGAAACAGCATTTAGAAGTTCGGGATGTGGAGAAAAATgtacaaattaattataatgatgaaaatagtagattaagtaatgtaaataattttgttcAAGTAGCTGGTCAGACCAGTGTTACTGATGAATTTTCTAATAAGACTGAAAATCTTGAAAATGATTTAATCAAAGAAGCCTATAATGGTGGAGTGGGTGGACGTTACATATGTCCATACTGTAAATTATCTTGTGCCAAGCCTTCAGTTCTTCAAAAACATATCAGAGCTCATACGAATGAGAGACCATACCCTTGTGTACCTTGCGGATTTGCTTTTAAAACGAAATCCAACTTATACAAACATCAAAGATCAAGAACACATGCCTTAAGAATGCAAGGAGCTGATGTTTCGGTAACTTTAAACGACGATGACTTATCAGGAGGTTCAGAAAGTGATACGTCTATTCCTCCCACATCTGTTTCGGAAACTGGTTCTGACGTTTCTATAATACGTGCTGAGAATGTGGAGTCAAATGATTCCTCAGAACTAATTATTGATACAAGCATGCCCTCAACGAGCACGAGCTTTACACTAATTGATAACAATAGAACAAAATCAATTTATAAACCTAAATTTAGAGCAGCCTTATATCAAGAAAACGATGAAAAAGATAAAGTGAAAAAATCTATTTCCCCGAATGCTGATTTCCTTACGGAACATATCTCGAAAATTATATCAGATAATGAAGCTATTGTTGACGTTATAGAAACACCATTACAAAAGAAAtatggaaaaataaaacaaattgcgGAAAGCAAACAATTTATGACTGAATTAGGTGAAATTAAATCAGAACCATCACCACTTAATTTGACTAAATCAAATCATGAAAACGAAAACTCATAtagaaaaagatctcattcTGAAAGTTTCTCACAGAGTGATCACCAAAAACATCCTTTGAATCCAGAAGGCTCCATAATAAAAGATCTCCttcttaaaactaaaatgaacGGATTAACGTCAGCTACTGGTGAAATCGATggatccttatttatttgtccCCTATGTCAGATAGTATATCGAAGTGCTGATAATTTAGAAACACATCGAGTGTATTATTGCAAAGGAAGCGTGAGCACAAATACTATCTCACAGAAAGATATGAAATCTATAAGACCTGAAAACCTATTTGTAAGAAGCAATTCAATCAACGTTAGATTACCGGAATCACCTTCAAATTATTCACGATCCTCGAATTCGACGAAATCGTCACCATCAAGAATTAAACCTGATAATCTTGTTATCTTGAAACCAGAGTGCAATGATGTGGTGGCTCCTTTACCCTCACCAGGGCCATTACTTGGCAATACAAGACTTGTAGATACCAGGGTACCATCAGATTATGCGAGAAAAAATGAAAGCCTAAAAGTGAAACCTTTACCGAGCCCAAAAAGAAGGATTGACAGTCGTAGTGACACTTATAGTCCAAGGTTGATAGAAAATATTTCACCGAGATCGAATGATCTGTACCCACAACCCAAGATAAGATGTATCGATGCTAACTCTGCAGCTTTACGAACTATGGATGAAATGCATATGAGACATAATTCAACCTCTCTTCAAATGTTTGGCGGTGAAGTCAAAATTCTAGACCATTCAGGTAGTACAACAACGTTGAGAATTGAGCCTAGTAAAAATCAGCTCTCACCCATATTAATTCAACAAACCCTTTCACCATCAAAACTTGGTAATGACGTGGAAGCCAGCAGTGTTGTGGTGAGATCCGGCTTGCATTCTGGTGGAACGATAATGCATAACCCACCAACACCTAAAGAAGCATTGGGCACTCCACAACCACAGACACCCAGAATATCAATATCAACCGCCCCTTCTATTCCGAGTTCCAATTTACCTAATATTCATGATATTACACACTTTCAATTTCCACCTCTGAGTGCTATCACAGCGTTTAATCCATTAACATTGCCTCCACTCAGTCCTTCATCTCCAAATGGTGCAACGACAATTTTTCATGGCGGTAAATTAATACCTCACGTACCTGGAATACCTGGACCAAACACACCTGGAGTATTCGTTGGAAATCCCAATTCTCACCAAAAGAATGTAACAAACAATGATACCAACAAAACTCCTGAGCAATATAGTCGCGATGACCAACATGGAAATTCCATAGTGAATATTCAATCTTCAAAaggaacaataataaaatacgacACACAGCAGTTAGGAAACAGTAAAAGTCCTAATTCAAGACCATCGAAACTAGAGACCGAAGAACAATCTCAAGATCACTTTAATATTGATATGCCACATTACATTTCAGCAGttcctataataaaaataaagaatgtaGATGAGTCGAGTTCGACTTCTAAATCATTTTCACCGACTTTAGTCAAATCTATTCTCAGACAAGACGGAGCCGTCAAGAGAAATTCCGATGGTATTCCTAGGACGCcagttttgaaagaaaatatcaaTTTTTCGTTACATAAGCTGAAGAATAAAGATAAATTTAATAGCAATCATATGTTTAAGAGTATAGAAACAAAAGCGGAAAAAGAGTTACGCAATTTTAATTTCGAAAATTTAATAACCAAGGCTGAAATTTATAACAATCAAATTCCAAGTTCATCGGAGGTTCAAAAGAACACTAACGCTCAAGAAACGCCAGTAATTTCAGTGTACAATGAAAGGTCTGAAACGTCTTACTTCCAGAAGAATATCATAACAAAACCTACAGCAGAAGAAAGAAAACCAAAATTTTTGCGGCCTTCAACTTTACCTTTAAAACCAGGCACATTTACGCCTAAAAGACACCACGGGATTACACCGAATGCGAATACAATGCCTCTTGTATCTCCAGAGACTCCTCGCCCCGCTAAAGCCTATGGCCAACTATACTTAAACGGAAATGCCTACACATATCTGGGATTAAAATGTTCAACAAAAGTTTTCTATTGCACGATCAATAGGCCTCAACCAACATATGTTCCAAATCAGCATTTTCTATCAATGTACAGTAACTGGCagTTATTATCAGAGCTGACGCCAGACCCGCTAGGATTGTCAGCATCGTCTGCTATGTCTCTGTATGACTCACGTCATCGACCGCAAGCTGTGGCTGTCGCTGTGATTAAACAGGATCTCGTACTGACTCATTCATCACAGTGGAAgagaattataaaagaaaacaaacagGCAATTCAACTAATGGATATGAAGAAAACGGACgaaaataaattttcagtttgTGACGTGACCCCTAAAAAAGAGGTGACTGGTGGGTTCGAAAGTAATGAGGAATATACGTACGTCCGCGGTCGAGGAAGAGGACGTTATGTTTGCTCTGAGTGTGGAATTCGTTGTAAAAAGCCTTCGATGCTAAAGAAACACATCCGCACTCACACCGACGTTCGTCCTTATACATGCGTGCATTGCGCTTTTAGTTTTAAGACTAAGGGGAATTTGACGAAACATATGAAAAGTAAAGCACACTATAAAAAATGCTGTGAATTGGGAATAAATCCAAATGAAGGAAATGATGCTGAAGGTGGAGAGATGGCGCAATGCTCAGGAGAAACTGATGATGACACAGAATCGGAGGGAGATGAAGGAAACGAAGGCGAAACAGAATCAAGTGATACAGAAGCTTACAAGTCACGATTACCAGAACATGAAGCTGCGCACTGTTTATTATCACTAGGAGGATCTAGACCGACCACGTCTGCCACTCCTGGTCTAATAACAAGCAATAGACCTTCAACATATCCCTATACACCAACGGGATTGGAAAATGTTAGTACAGAAAGTAATCCAGAAAGGCCAAGTACTGCACTAAGTTCTCCAATCGACTCGAGGTTGAGCACTGAAAATGAACCAATGGATCTCAGCAAAACTGATATAAAAACAACACAACATAACATTCCCGAAATACCAACCGCCAGAGAATCTAGTGTTTTAGCATCCTTAGCTTCAAATACTGCCAAACTTCCTAATCACCAGACTCAGTGGACAAATGGAGAACCAATGCTTCATACATATTTGACTGAAAGAGCTTTGCAAGATTCTAAGATTAAGCAAAGCCAACTTACTAGCAGTTTAACTAAAGTAAGGAAAGTTGATCTTGAAAAGTCAACGTTCACCGATAGTTACTGCTCCATGGACAGCAGCAATAAAATTGTGACGTCCGCTAAAAGTTCGTTTATGACGACAGTGACTTCTTCTCGAGTCATTTACAGCGAAGCAAAAATGACAGAAAGTGAAAGTGACAATGTCTTAAAATCGCCAGCTGTATTAAGAGACGAGGTCTCCGTAATCAGAGAACCCTCTGTTTCAATTTCTTCAGTCAATGAGACTAAAGGAAATCATCTACAGACTCAAAGTAATGCAGAAAATGCCAAACATGTTGTCtctgaatatttaaaacatgCAAGAATAAATCATATTCAAACACATGAAGACAGTTTACAAAATCAAAATGACGATTCTAACGATGAtaacattttggtaatacgtGAAGACAATACAAAATCAGATGAACAATTTTCAGAAACCGAGGCAGCAAAACTACCCTCCTTGGACCATGAACCTGTCGCGAGAAAAGTTGTGATAGGTGTGGGAGGCGTAGCTTTTAAAGTTACAAAAGGAAAGGATTTTGAAAATAGTTCTTATTCACCTGGCAGGCTAATGGAAGATGGTCGAAGGGTGTGTGATTTCTGTAACAAAACATTCACAAAACCTTCACAGTTGAGGTTACATCTGAATATTCATTATATGGAAAGGCCATTTAGATGTAGCGTGTGTGCAGTAAGTTTCAGAACAAGAGGACATCTTCAAAAACATGAACGCTCTGGTTCACACCATAATAAAGTGTCCATGACATCAACATTTGGGGCTGCTACGTCGTTTAATCCTAGACCATTTCGGTGTTCTGATTGTAACATAGCGTTCAGAATACATGGACACCTAGCTAAACACCTTAGGAGTAAAATGCATGTAATGCGGCtagaatgtttatttaaattaccttTTGGAACATTTACTGAAATTGAACGTGCGGGTGTAAGTTTAACAGACATTGATACGACAGATTGTGCAAGTTCGCTTGCTAGTTTACAATCCCTTGCGAGAAAGCTTCATGAGAAGGATCCGACAAAGCTCGAGTATCGAGAACCTAATGGTGCGACGCTGACGGGTTCTTCCACGGGCCGGGACTCATCCGATGATGAAGATGCAGCTCCTTGCGATAACATGAGTGAAAGTGAAAAAGAAATCGAAGGAAAGACTATTGAAAGTAGTGAAGGTCAAGATAAAGACATGCGAGTTAATTATAGTGCCACAGATATTTAG
Protein Sequence
MPLTQEKRLDSNFSNNNDHSYLHKKFKKMASTMSVFPGNLPKTGETRHKETIVSSTACSLSISNGSIAAAHPEIEKIKTKVEKQHLEVRDVEKNVQINYNDENSRLSNVNNFVQVAGQTSVTDEFSNKTENLENDLIKEAYNGGVGGRYICPYCKLSCAKPSVLQKHIRAHTNERPYPCVPCGFAFKTKSNLYKHQRSRTHALRMQGADVSVTLNDDDLSGGSESDTSIPPTSVSETGSDVSIIRAENVESNDSSELIIDTSMPSTSTSFTLIDNNRTKSIYKPKFRAALYQENDEKDKVKKSISPNADFLTEHISKIISDNEAIVDVIETPLQKKYGKIKQIAESKQFMTELGEIKSEPSPLNLTKSNHENENSYRKRSHSESFSQSDHQKHPLNPEGSIIKDLLLKTKMNGLTSATGEIDGSLFICPLCQIVYRSADNLETHRVYYCKGSVSTNTISQKDMKSIRPENLFVRSNSINVRLPESPSNYSRSSNSTKSSPSRIKPDNLVILKPECNDVVAPLPSPGPLLGNTRLVDTRVPSDYARKNESLKVKPLPSPKRRIDSRSDTYSPRLIENISPRSNDLYPQPKIRCIDANSAALRTMDEMHMRHNSTSLQMFGGEVKILDHSGSTTTLRIEPSKNQLSPILIQQTLSPSKLGNDVEASSVVVRSGLHSGGTIMHNPPTPKEALGTPQPQTPRISISTAPSIPSSNLPNIHDITHFQFPPLSAITAFNPLTLPPLSPSSPNGATTIFHGGKLIPHVPGIPGPNTPGVFVGNPNSHQKNVTNNDTNKTPEQYSRDDQHGNSIVNIQSSKGTIIKYDTQQLGNSKSPNSRPSKLETEEQSQDHFNIDMPHYISAVPIIKIKNVDESSSTSKSFSPTLVKSILRQDGAVKRNSDGIPRTPVLKENINFSLHKLKNKDKFNSNHMFKSIETKAEKELRNFNFENLITKAEIYNNQIPSSSEVQKNTNAQETPVISVYNERSETSYFQKNIITKPTAEERKPKFLRPSTLPLKPGTFTPKRHHGITPNANTMPLVSPETPRPAKAYGQLYLNGNAYTYLGLKCSTKVFYCTINRPQPTYVPNQHFLSMYSNWQLLSELTPDPLGLSASSAMSLYDSRHRPQAVAVAVIKQDLVLTHSSQWKRIIKENKQAIQLMDMKKTDENKFSVCDVTPKKEVTGGFESNEEYTYVRGRGRGRYVCSECGIRCKKPSMLKKHIRTHTDVRPYTCVHCAFSFKTKGNLTKHMKSKAHYKKCCELGINPNEGNDAEGGEMAQCSGETDDDTESEGDEGNEGETESSDTEAYKSRLPEHEAAHCLLSLGGSRPTTSATPGLITSNRPSTYPYTPTGLENVSTESNPERPSTALSSPIDSRLSTENEPMDLSKTDIKTTQHNIPEIPTARESSVLASLASNTAKLPNHQTQWTNGEPMLHTYLTERALQDSKIKQSQLTSSLTKVRKVDLEKSTFTDSYCSMDSSNKIVTSAKSSFMTTVTSSRVIYSEAKMTESESDNVLKSPAVLRDEVSVIREPSVSISSVNETKGNHLQTQSNAENAKHVVSEYLKHARINHIQTHEDSLQNQNDDSNDDNILVIREDNTKSDEQFSETEAAKLPSLDHEPVARKVVIGVGGVAFKVTKGKDFENSSYSPGRLMEDGRRVCDFCNKTFTKPSQLRLHLNIHYMERPFRCSVCAVSFRTRGHLQKHERSGSHHNKVSMTSTFGAATSFNPRPFRCSDCNIAFRIHGHLAKHLRSKMHVMRLECLFKLPFGTFTEIERAGVSLTDIDTTDCASSLASLQSLARKLHEKDPTKLEYREPNGATLTGSSTGRDSSDDEDAAPCDNMSESEKEIEGKTIESSEGQDKDMRVNYSATDI