Msep001919.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Mythimna separata
Gene Symbol
Sall1
Assembly
GCA_030763345.1
Location
CM061168.1:10518488-10533082[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 3 2.8e+02 3.3 0.3 2 23 7 28 6 28 0.96
2 13 0.74 70 5.2 0.2 1 23 1000 1023 1000 1023 0.90
3 13 3.5e-06 0.00033 21.9 2.2 2 23 1127 1148 1126 1148 0.97
4 13 0.00011 0.011 17.2 2.8 1 23 1154 1176 1154 1176 0.98
5 13 0.017 1.6 10.4 2.9 2 23 1183 1204 1182 1205 0.94
6 13 0.061 5.8 8.6 1.2 5 23 1218 1236 1217 1236 0.96
7 13 0.022 2.1 10.0 1.1 3 23 1243 1264 1242 1264 0.96
8 13 0.0019 0.18 13.4 0.5 2 23 1281 1301 1280 1301 0.98
9 13 0.0017 0.16 13.5 0.6 1 20 1307 1326 1307 1329 0.89
10 13 0.00051 0.049 15.1 0.3 1 23 1337 1359 1337 1359 0.98
11 13 0.0065 0.61 11.7 7.2 1 23 1365 1387 1365 1387 0.98
12 13 8e-06 0.00076 20.8 1.4 1 23 1393 1417 1393 1417 0.98
13 13 0.0013 0.12 13.9 4.2 1 23 1423 1445 1423 1446 0.95

Sequence Information

Coding Sequence
ATGGATCAACTCGCGGTGCAGTGCCCCGTGTGCACACTGTTTCTGCACAATGGGATTACCCTGGAATCCCACTTGGACACCCATCCCAAAGACCAGGTTATAAAAGCTTTGTGTAATATAGCAAACAAGGGCTCTAATTATGCCAGTAGGACTTCCACACCGGTACATTCTGAGAGGTCATACAGGAGCCGGTCACGGACACCTGCCACTGATGACAGCACCAAGTGGCCTACATCACGCAGTAATGACCATGAGCGCTACTGGCGGAGAACACCCAGCAGGGCCTCTAAGACACCAGTATCAAATACATCTAGAAATGGGACACCTGATATTAGATTGCTCGATGTGAACTTTGAGAGTCATGGCATTGCTGGAAGTGGTTCTGGACAACATGTAAACAATCCCTTTCATTTAAAAGCTGACAAGCTTCAGCATACTTTCCAATGTCCTCCAGTTCCAGAGTTTGATCCACAGTTTGTTTACTACCCAGAGCAACAAGAGGACAGGGAGATCAAGTACTCCCGGAGTGCTGAGTACAATGCCATGGACAGCAGCAACAACCTGTTTTCTTACAATGTACCACCAATGACAGGGTCAGGGGTGAAATTGTTACCAGCAGGGTCTAGAAAAGCTAATGACCTTGTTAAAGTTCTGCCAAAACCAAATAACATTCTCCTTAAGACCAATATGGGTGGTGTGCAATACATAGGTCCAGGGGTCAAGCCCATGCATGTCATGGTACCATCTACACCTACGTTCATGCAGAAAAATGTGCAAAACAACATGATCATGACAGGCAGTGTGCCAAACCAACAGATGCACATTGATACCAAAACTGCTTCACCCCCGCTAGCTAGCAGCCAACTGAACCAAATGACTTCTGGTGCATTCACTCCAGGAACAACTGTTGTTACCCAAAACTCCCAAATAATTTACAGAGAAATGGTGCACAACATAGATGGGAAACCTTTTATAACTACCATGCCCACAGTTCTCGGTGACAATGTTTCCAATTTAGCTCAAGCTAGTTCCATGTATCAAAATGTAATGGTTGTAGATCAGTTTGGAAATACTTCATGTATGTACACAACTCCTCAACAAGTGATGAATAAATCATGCTCAACATCCATGTACAATGAGTCTGGGACACTAATGCCAAGTGTACACATTGATAAATCTGTACAAAATATGAGTGATCCtaaaacactaattattgaGGTAGGTCCACTCATTACTCCTGTTCATGATAATATTGAAGATACAAGCTCCATGCCACAGTCAGTTAGCAGCAGTGTAGTTGACAATACTGAGATTTCCACTGAGGCAGACCCTAAATATGATATGCCAGGCAGTACTAAGGGTTTAAAAATTCTAAGCAACATAAAAGTAGAAGTTCCCGTGCAACATCACAAGAATATGGTCAACACTGTCATGGATCTGACTGGGCCTAATGAGTCAGACTATCCTGTAGAGCGAGTAGATTCACCCGACAAGATCCTGCCTGACCTGGAAGATAACAACCAGCTGTCGTCTGATGACACTCAGCCATCATCCATGTCCAGTGCTGACAGCATGGTCTCCCACACATTTTCTGTGATAAAGAATGTAGGTAATCCAAGCAAAAGTTCTGACAGTAAGTTGGACACAGATTTTTCAGACAGTTGTCCTGTGCCAGATTTAATATGTAATGAGAAGCCTTCCATATCACCTTGTAGTGAGTTGTCAGAAAATGGCGACAATTCAACCGATCGTACCTCAATGTCTCCCAAACCTGAAAGTAATCAAGTTAGCCATAGTAACCTAGGACTTCCAGAAAAGAAAATTCAGCTTTCACAGAAGCCATACAGGCACAACACACTAAGactgaacaatatttttgtgaagaaGCACAAGAAAGTTTTGCAGATTAAAAATGCCAAGGGGTTTCTGACCACTGCCAAGAAAACTGACAAGAGGGACACCATGCCCACGTCGTCGACTTGCAGGTCGCCAGAGAACTTTACCATGAATAAAATGCACCAAACAGATAAGATAGATTGTAAGGAGAAGGCTAACTTCTTGCAAACCATATCTGTTGAGGAGATCAAGGACAATGATGACAACAATGACTTTGATCCCAACACATCAGAACAGTCTTTGGACATAGAGCCACTAGCTGCTGATTTGAACCAGTCTGAGTTTGCTACCAACATTGATCTGATTCAAGTGAAGGAGGAAATAAACACGAGCAATGAAGGAGGGTTCAGCAATGAGCCCGTGACGACGGACCGCATGCTGACGCCACTAGAGACATTGCGACCCATCAATGTTATCAGCTACGGCAATCTGTCCAATGAGGATTTCAACGAGGAGTCCACCGACCGGGAGCTGCTGGACCTCGAGGCGGCGTCCAAGAACAAGCAGTTCGTGAACATGATGAACGAGAACTATTTCGGCGACAACATTTACGCAGACTACTTTACTGCGGACCGCGTGGAGGCGTTCGACGCCGAGCGCGAGGCGGCGGGGTTCAAGGAGAGCGCTAAGGATGGTATGTACGCCCTCTGGGGCGAACCTTCACAGAAGGACGGCGATTTCGTGCTGCCCAACTTTATACACGAGAGTTACAAAATAGCCGAGAGTAATGGGATAGATTATTCTGAGCTAGGTGCTAGAGCAGGACAGGTGGACGTGGAGGGAGACGGGTGCGAGCGGGACAGCAAGGCGGACGTGCTGAGCGAGGGCCGCAGCGACAGCGACGCGCCCATGGACATCTGCGCCGACGAGCGCATGCCGCCGCGCGGCGAGCTCAGCGGCCAGGAGAGCAACGGCGACATGGAATCGCCCTGGAGCGGGATGTACACAGAGGTGACGCCGGCGGAGCCCTACGACCTGATCGCCCGCGAGAGCTGGGTGTCGGACGGGTCCGAGGTGGATGCCAACGAAAAGCGGGAGCCCATCGAGGAGGAGTTGCCGCTGGCGCCGCCGCTGGCGCCGGTGTTCGGGCGCGCGCGCGTGCACTCGTgcgcggcgtgcggcgcggcgtgcgcgtCGCTCAAGGAGCTGCGCGCGCACAAGGCGCTGGTGCACGCGCTGCCCACGTGCTCCGCCAGCAAGACCTCCTACAGCAGGCTCGTCACCGCACGGGCCATCAAGAAGGAGGAGAAACCTGATACTAACAACCTACTACCACCAATAGACTCAAAAGATTCGATATCTTCTACAATTCTCCAAGTTTACGAGAGTATTCAAGTTGAGGAGGCCAAACCCAAGATCGAGGTGGACCGGCTGATCAAGCAGGAGGTGAAGCGCCGGCGGAGGGACTACGTGTGTCCCACGTGCAAGGTGGACCAGGGCTCGGACGTGCAGTTCAACGCCCATCTGAAGATCCACCCGCTGGAGTGTCTCACCTGCGGCAAGTGCTTCTCCCGGAGAGCCAACCTGTCCCTGCATATAAAGACACATTTAGGAATTAAGAATTATAAATGTGAGGTGTGTGAGAAGCGTTTCGTGACGCGCCAGAAGCTGACTGAGCACCACAACGTGCACACGGGCCGCGCGCCCATCAAGTGCACCCTGTGCGACGACACCTTCCGACGGTACTCCAACATGGTGCAGCACAGGGACCGGCATCATCTGGCCAAGCGCGCCAAGGTGCGCGACTTCGTGTGCCAGTGCGGCGTGGTGTTCCACTCGCGCGCCAAGCTGCGCTGGCACCAGGAGACGCACGCCGAGCGGCCGCGCGCCTGCCTCTACTGCAGCGACAAGTTCGTGCACGCCGCCTCCCTCACGCGCCACGTGCGCCGCTCGCACAACGAGTACTTCCTGGCCGAGCGCCACAAGGGCAAGCAGGAGAACGTGCAGTGCCCCGTCTGCAAGCAGGTGTACCTCCGGTCGAACCTGCGCACGCACCTGCAGACGCACAGCGGGCAGCGGCCCTACATGTGCATCATCTGCAACAAGGCCTTCACCACCAAGTGGAACCTCAAGCTGCACCGCTGGACGCACGCGTCGCGCTCGGCCAAGCCCTACAAGTGCAGCCTGTGCAAGGGCGCCTTCATCCGCCAGTCCGAGTACGTGTCGCACATGAACGCGCACAAGTCCGTGCGGCCCTACACGTGCAACTACTGCGGCTGCCAGTTCATCCGCAAGTACAACTGCCAGCGCCACGTGCGCGAGCACGAGATGGCCAAGAAGTACGTGTGCAAGGTGGCCGAGTGCGGCAAGTCCTTCCACCGCTCCTACTACCTGTCCGAGCACATGAAGGTGCACAGCGGCGCGCGCCCCTTCGCCTGCAACATCTGCGGCAAGACGTCCTCCAACAAGTCCAACCACAACAAGCACGTCAAGATCCACCACGCCAGGGAGCCCGTCGCCACGGAGGCGTAG
Protein Sequence
MDQLAVQCPVCTLFLHNGITLESHLDTHPKDQVIKALCNIANKGSNYASRTSTPVHSERSYRSRSRTPATDDSTKWPTSRSNDHERYWRRTPSRASKTPVSNTSRNGTPDIRLLDVNFESHGIAGSGSGQHVNNPFHLKADKLQHTFQCPPVPEFDPQFVYYPEQQEDREIKYSRSAEYNAMDSSNNLFSYNVPPMTGSGVKLLPAGSRKANDLVKVLPKPNNILLKTNMGGVQYIGPGVKPMHVMVPSTPTFMQKNVQNNMIMTGSVPNQQMHIDTKTASPPLASSQLNQMTSGAFTPGTTVVTQNSQIIYREMVHNIDGKPFITTMPTVLGDNVSNLAQASSMYQNVMVVDQFGNTSCMYTTPQQVMNKSCSTSMYNESGTLMPSVHIDKSVQNMSDPKTLIIEVGPLITPVHDNIEDTSSMPQSVSSSVVDNTEISTEADPKYDMPGSTKGLKILSNIKVEVPVQHHKNMVNTVMDLTGPNESDYPVERVDSPDKILPDLEDNNQLSSDDTQPSSMSSADSMVSHTFSVIKNVGNPSKSSDSKLDTDFSDSCPVPDLICNEKPSISPCSELSENGDNSTDRTSMSPKPESNQVSHSNLGLPEKKIQLSQKPYRHNTLRLNNIFVKKHKKVLQIKNAKGFLTTAKKTDKRDTMPTSSTCRSPENFTMNKMHQTDKIDCKEKANFLQTISVEEIKDNDDNNDFDPNTSEQSLDIEPLAADLNQSEFATNIDLIQVKEEINTSNEGGFSNEPVTTDRMLTPLETLRPINVISYGNLSNEDFNEESTDRELLDLEAASKNKQFVNMMNENYFGDNIYADYFTADRVEAFDAEREAAGFKESAKDGMYALWGEPSQKDGDFVLPNFIHESYKIAESNGIDYSELGARAGQVDVEGDGCERDSKADVLSEGRSDSDAPMDICADERMPPRGELSGQESNGDMESPWSGMYTEVTPAEPYDLIARESWVSDGSEVDANEKREPIEEELPLAPPLAPVFGRARVHSCAACGAACASLKELRAHKALVHALPTCSASKTSYSRLVTARAIKKEEKPDTNNLLPPIDSKDSISSTILQVYESIQVEEAKPKIEVDRLIKQEVKRRRRDYVCPTCKVDQGSDVQFNAHLKIHPLECLTCGKCFSRRANLSLHIKTHLGIKNYKCEVCEKRFVTRQKLTEHHNVHTGRAPIKCTLCDDTFRRYSNMVQHRDRHHLAKRAKVRDFVCQCGVVFHSRAKLRWHQETHAERPRACLYCSDKFVHAASLTRHVRRSHNEYFLAERHKGKQENVQCPVCKQVYLRSNLRTHLQTHSGQRPYMCIICNKAFTTKWNLKLHRWTHASRSAKPYKCSLCKGAFIRQSEYVSHMNAHKSVRPYTCNYCGCQFIRKYNCQRHVREHEMAKKYVCKVAECGKSFHRSYYLSEHMKVHSGARPFACNICGKTSSNKSNHNKHVKIHHAREPVATEA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00908225;
90% Identity
iTF_01026666;
80% Identity
-