Msep030517.3


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Mythimna separata
Gene Symbol
-
Assembly
GCA_030763345.1
Location
CM061196.1:9719569-9768693[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 0.0022 0.21 13.2 0.1 1 23 510 533 510 533 0.95
2 17 0.4 38 6.1 1.1 2 21 658 677 658 678 0.94
3 17 0.06 5.7 8.6 3.8 2 23 741 762 740 762 0.95
4 17 0.6 57 5.5 1.1 1 23 774 798 774 798 0.91
5 17 0.00022 0.021 16.3 0.3 2 23 805 828 804 828 0.97
6 17 0.24 23 6.7 0.3 1 23 834 856 834 856 0.93
7 17 0.0057 0.55 11.8 2.9 1 23 862 884 862 884 0.98
8 17 3.9 3.7e+02 2.9 0.3 2 19 895 912 895 915 0.87
9 17 0.075 7.1 8.3 0.2 1 23 1300 1322 1300 1322 0.97
10 17 3.5 3.3e+02 3.1 7.2 1 23 1329 1351 1329 1351 0.95
11 17 0.0023 0.22 13.1 1.8 1 23 1401 1424 1401 1424 0.95
12 17 0.00039 0.037 15.5 0.7 1 23 1431 1454 1431 1454 0.98
13 17 0.0065 0.62 11.7 0.2 2 23 1541 1563 1540 1563 0.96
14 17 0.0046 0.43 12.1 3.1 3 23 1580 1601 1579 1601 0.95
15 17 0.00025 0.024 16.1 1.3 1 23 1621 1643 1621 1643 0.97
16 17 0.00021 0.02 16.4 0.1 1 23 1649 1671 1649 1671 0.97
17 17 0.00065 0.062 14.8 0.7 3 23 1679 1700 1677 1700 0.95

Sequence Information

Coding Sequence
ATGGAGAATGCGACAGGCGAGGAAGTGGCCCTCCGAGTAGAGCCTGGAGATAACTTCCAGATGTTTCTAGATAGAGCCAAATTACTCCTAGGCTACGATGTAGATATAAACTCTATTACCAGAAACCAACCTGTCTCGCTATCAGAAAACATTTACCAATTTCTGGTAAATGCCGAACAAAACTTACAAGCAGACGATCTAACGCAAAACTTTGACCAAATGTTGGACACCAACGATGGGGCCAACGACTTGGTCTACATATTGGACGATGGCACTCAGATCCGTGCTTCTCAAATACATTTTGACAATGACGATCCTTTAGTTGATTTGACTGCTGAGAAAATACCATTTGTTAAATACGCTGACGATCTTACTGACATAGAATTTGATGACGTTATTGTCCAAGAAACGAAAAAGATTAACATTGTTGAAAGTCCTGTTTCTAGATGGTCTAGCAAAAATTCTAGTCCAAAATGTAGCTTCGTCAATTCTTTACCATTCAAACTTGTGTGCAATAATACCTCTGGATTCGAAGCGCAATTTACGAAGTATTTAGAAGCTAATACAACTAAGACTTACGCTACTTTAAATCCGGTGACGACTAGAAATAAATCTCCAAAAAGTTTGATcaaagataattttaaaaattacgatGATAGTTATCAGAGGAATGACAATCTATCCTACACAAGAGAGGAGATTTTGAACATGTTCAAAGACTCTCCTATGACGTCATTGCCTTATGATCAGGGTTACAGTGAGAGGAGACATGTAAGGAAAACTGACCCTTCAAGACTCGTTCATAAGACTTGGAGCAAGCCTCTTTCCTATGTCGATATTGATGGAGTTTTAATAGGCGAGAGTGAGAGCCAGATATGTTTTATTTGCGGAAAACATGTGGATAATAACGTGGATAAACTGTACCTATTTGATAATGAAGACCAAAGGTTATACAGATGTTCTCCGCAGAAGAAAATGTCGACACAACTGAAAATTATCTGCGTTTGTTGTCTTAATGAAAACTTCACGCCGTGTCGTATGAAAAGTGCTAACCAATTCTTGAATCCCGACGAATATCTCGTCATAAGAAATAATCAACAATACATCTTCCAAAAGATCAAAAACTTCAATTTCGCGCACCTTGGTAAAGCTAAAGATATCATAAACAAGATAGAGAAGAGAACAGACAAGGAAGAGTTTGTTAAAGTCGAAATTGGTTCTGATGGGGAAATTATTACTAAACCCATAGACAATCGGTCTGATGACGTAGTTATTGTGAAAGATGAGAAGAAGGAGGGTAGTTCGAGTGATGTAGAGATTGTAGAGCCGGATCCGGAAATAGATCATATCATAGACAATTTGGAGGAAGCGGATGAGGAGGTAAAGGAGTTTTTGGGGAAATATCAGCGAGATGACAGTGAAGTTACTGAGTTGAAATGCAGATTCTGTGAGCTAGTCTTCCCGGACCTGGCGGCCGTGTCGGAGCACTGTGAGACACACAAACATGACCTAGAAGACGGCGAGGTGTTCCCGTGTCCCCTCTGTAACTATGGTTATGCCAATTTGAAATATCTGAAAGCGCATGTGAAGGCAGCTCACGAGAAGAGTGAAACTCCTAAGATATTGAATGAAGGAAATGAATCGGCCAAAGACGAGAATAAAGATGGTGAAGCAGGTCAAAATAAAGGGTCACCGCCTATTGCAAAACGGACAAGGAGTTCTAGTAGAAAAGGAGATGGTGATGGAAAAGATAGTGAAAAGTCTTCAGAAGAAACAAAGGCTGATTCTAATACAGAGGCGTACGAGCCACCCATCATAAAGACTGAGGTAAAGCAAGAATGCCTGGACAGCAGTGAGGATGAGATCTGGATCGTGCAGACCGCTGATGCTGAAGCTTCTCAGGAGTTGCAGAAACTACTCTGTACTACCAAGAAAGAAGACGACCAGGATGGTAGATCTGAGAAAGCACCGAAATGCTTTAATTGCAGCCAAATCTTTCCCAACGCGGACGGCCTGTCCAGCCACCGCTGTAGAAGACGCGCTCGCAAGCGGAAGTCCAAAGACTTGGGCAACCTCATCTGTATACCTACCGAGGAAGACTTTCTCAAGAGAGCTCAAGGACGGCCAAGACCAGCGGACACATCTATAGACAACGATCTGCTGGTTATgCGTCCTCGAAAACGCCGCAGCCGGGAACCGACTTCCAACCCTCAAGTGGTGACCTGCCACAACTGTAACGAATCCTTCACTTCCAAAGTTAGACTTAAGTTTCATATGCAGTTCCACGAGGTGTCCAACCAAGCGCGCTCAGACGGACGCTACTCATGCTCGGAGTGCGACGACGCCACCTTCTCCACGGAGACGGAACTCTTCGACCACGTACACTTCCAGCACGACAAGCAGAAGCGCTGGCAGTGTCCTGTAGACGGCTGCGGGAAGACATTCTTCCTCAGGGCAACACTAACAAAACACAGTcgcacacacacagacacgcgTCGTTACGTGTGCGTGACGTGTGACAAGCGGTTTTTGGACAAACAGACTCTGGACGAGCATGGAGTCACACATTTACAGATCAAGCCGTTCCAGTGCCACATCTGCCTGAAGCAGCTGACGCGGCGCTCGCGCCTGCGCATGCACGTGCGCGCGCACGAGGAGGAGCTGGCGCCGCGCCTCGTGCGCGTCTGTGCCGTCTGCACGAGGGCCTTCCGCGACCACCTGCACGCACAGGAGCACGCATCAAAATCATCGGAATGTATCGAAGCGTTTGCGAACGAGTTGAAAGAGGAAGCGGAAGAGGTGTCGGTGCAGCTGTCCCCCACCAGTGGGCTCGTCAGGCACACTGTGCAGATTGTGGgtgagttcatcatcatcatcatcatcacagcgTTTGCGAACGAGTTGAAAGTGGAAGCGGAAGAGGTGTCGGTGCAGCTGTCCCCCACCAGTGGGCTCGTCAGGCATACTGTGCAGATTGTGGgtgagttcatcatcatcatcatctcaaccggcagacgtccaccgctggtgCAGCTGTCGCCCACCAGTGGGCTCGTCAGGCACACTGTGCAGATTGTGGgtgagttcatcatcatcatcatcatctcaactgaaagacgtccaccgctggtgCAGCTGTCCCCCACCAGTGGGCTCGTCAGGCACACTGTGCAGATTGTGGgtgagttcatcatcatcatcatcatctcaactgaaagacgtccaccgctggtgCAGCTGTCCCCCACCAGTGGGCTCGTCAGGCACACTGTGCAGATTGTGGgtgagttcatcatcatcatcatcatctcaactgaaagacgtccaccgctggtgCAGCTGTCCCCCACCAGTGGGCTCGTCAGGCATACTGTGCAGATGGTGGgtgagttcatcatcatcatctcaaccgaaagacgtccaccgctggtgCAGCTGTCCCCCACCAGTGGGCTCGTCAGGCACACTGTGCAGATTGTGGAATCTCCTAAACTATCGAAACCAATAAAACGCCAAGTATCGAACGAGGTGGGCGAGCCACTGCTATCCCAGCTAGCTGATGAGGCGAGGGCCTTGATCAGAGTCGTCGAGATCGAGAAGGCGTTCCGCTGCGAGTACTGCGAAGAGTTAGTATCATGTTGTAACACGACTAGCTCAGAACGAGCTCAGAACGAGGTGGGCGAGCCACTGCTATCCCAGCTAGCTGATGAGGCGAGGGCCTTGATCAGAGTCGTCGAGATCGAGAAGGCGTTCCGCTGCGAGTACTGCGAAGAGTTAGTATCATGTTGTAACACGACTAGCTCAGAACGAGCTCAGAACGAGGTGGGCGAGCCACTGCTATCCCAGCTAGCTGATGAGGCGAGGGCCTTGATCAGAGTCGTCGAGATCGAGAAGGCGTTCCGCTGCGAGTACTGCGAAGATGTATTTTACTTGGAGAGCGGTCTGAACTCGCACCGCGCGATACACAAAGGAGTCAAGAACCCCTTCACTTGCCACATATGTAAAGTTAGCTTCGCCACTTATTCCAGATGCACAACACACAAAACGACACACGGTTTCTACAAGCGCTCACTAGCTGACGCTAAAAAGCAAGTCGACGCCAAAAAACAAGCCGACGGCCCTTCACAAACGGAAGCCGACGGCTCCACCCGGTCGGCGACCGGTATACTGGGATACGGCGACTTTCCAGTCGTGAAACACTTTCTGTGCGAGGACTGCGGGCGCTCGTACCTGCACTGGACGTACCTACAGGTGCACAGACGAATGAAGCACGCCAACGAGAACTTTCTCTACAAATGTAACCAGTGCGAACTCACCTTTCCCAACAGTTGGAGCCTGGCGTACCATCGTAAGAAGGTGCACGGTAAGAACGGAGCTGATGACCCTGGCATAGCCGCCAACAAGAGCGGCACTGAAGATTACAgTTGGAGTCTGGCGTACCATCGTAAGAAGGTGCACGGTAAGAACGGAGCTGATGACCCTGGCATAGCCGCCAACAAGAGCGGCACTGAAGATTACAgTTGGAGCCTGGCGTACCATCGTAAGAAGGTGCACGGTAAGAACGGAGCTGATGACCCTGGCATAGCCGCCAACAAGAGCGGCACTGAAGATTACAgGATACCGTGCCGGGATTGTGACGAAGTGCTGCCGAACAAAACAGCTTTGTACAAGCATCGGAAGAAGGAACACAGTGATGGCATGTACCCGAACTCCGAGTCGGAGGCTACAGGCGGGGCGTGTCCCCACTGTCCCGCCACGTTCACGCACACTACCGACCTGCACAAACATGTCAAAGAAATCCACGGCAAAGACGAGGATTACGGCAACAAAACGTCCGCCGACGCGTGTCCACGGCGGCCGCACGTGTGTCCCGTATGCGGGCACGCGTTCCGCACGCTGTCCATGCGGAACGAGCATCTGCGGGTGCACACTGGCGAGCGACCCTTCCCTTGTGATGTGTGCGGAGTAGCGTTTAGACGCTCGACGGCCATGCGCAACCATCGGCTCATCCACACGGGGGTCCGCGCCTGGGCTTGTGGGCGCTGTCCCAAGCGCTTCCGCATCCGCTCCGACCTCCGCACGCACCTCCGGCTGAAGCATCCTGCTACTATTGTAGTTGTTGAGATGGAAGGCTTGAACCCGTCGTCTGAAGAAGTACTGCAGGCGCTGGCAGCACAGAATGTTCCGCACGACAAGCTTATAGACATCACTAAGATGTCTTTCACGAAGGGCTCCACAAGCGTGATCCCGTCGTGTGCGCGCGCACTGTCAGCGCTCAACAACGTGCCGCGCACACACGTCGCCTGCATCAAGCCCACGCCCGCTCCTATGTtGGATGATTTACCAGCCCGTCGCGGTCGAGGCATCGCCAAGAATCCGCGGAGACCCAAGATACTGCAGCGAGGAGAAGTGGACTCGCAAGACAACGCGGACTATCCTATCGACGGCGCCGAGGAGCTATCGGACCTCAACGTGCAGCTGTTGCTTCGGGACGGCGTGCTCGTCAACGGCAATCAGATGGTACAGCTGCAGCTAGACGACCCTATACTCATGGAGTACCCTCCGGACAGAGGGACATAG
Protein Sequence
MENATGEEVALRVEPGDNFQMFLDRAKLLLGYDVDINSITRNQPVSLSENIYQFLVNAEQNLQADDLTQNFDQMLDTNDGANDLVYILDDGTQIRASQIHFDNDDPLVDLTAEKIPFVKYADDLTDIEFDDVIVQETKKINIVESPVSRWSSKNSSPKCSFVNSLPFKLVCNNTSGFEAQFTKYLEANTTKTYATLNPVTTRNKSPKSLIKDNFKNYDDSYQRNDNLSYTREEILNMFKDSPMTSLPYDQGYSERRHVRKTDPSRLVHKTWSKPLSYVDIDGVLIGESESQICFICGKHVDNNVDKLYLFDNEDQRLYRCSPQKKMSTQLKIICVCCLNENFTPCRMKSANQFLNPDEYLVIRNNQQYIFQKIKNFNFAHLGKAKDIINKIEKRTDKEEFVKVEIGSDGEIITKPIDNRSDDVVIVKDEKKEGSSSDVEIVEPDPEIDHIIDNLEEADEEVKEFLGKYQRDDSEVTELKCRFCELVFPDLAAVSEHCETHKHDLEDGEVFPCPLCNYGYANLKYLKAHVKAAHEKSETPKILNEGNESAKDENKDGEAGQNKGSPPIAKRTRSSSRKGDGDGKDSEKSSEETKADSNTEAYEPPIIKTEVKQECLDSSEDEIWIVQTADAEASQELQKLLCTTKKEDDQDGRSEKAPKCFNCSQIFPNADGLSSHRCRRRARKRKSKDLGNLICIPTEEDFLKRAQGRPRPADTSIDNDLLVMRPRKRRSREPTSNPQVVTCHNCNESFTSKVRLKFHMQFHEVSNQARSDGRYSCSECDDATFSTETELFDHVHFQHDKQKRWQCPVDGCGKTFFLRATLTKHSRTHTDTRRYVCVTCDKRFLDKQTLDEHGVTHLQIKPFQCHICLKQLTRRSRLRMHVRAHEEELAPRLVRVCAVCTRAFRDHLHAQEHASKSSECIEAFANELKEEAEEVSVQLSPTSGLVRHTVQIVGEFIIIIIITAFANELKVEAEEVSVQLSPTSGLVRHTVQIVGEFIIIIISTGRRPPLVQLSPTSGLVRHTVQIVGEFIIIIIISTERRPPLVQLSPTSGLVRHTVQIVGEFIIIIIISTERRPPLVQLSPTSGLVRHTVQIVGEFIIIIIISTERRPPLVQLSPTSGLVRHTVQMVGEFIIIISTERRPPLVQLSPTSGLVRHTVQIVESPKLSKPIKRQVSNEVGEPLLSQLADEARALIRVVEIEKAFRCEYCEELVSCCNTTSSERAQNEVGEPLLSQLADEARALIRVVEIEKAFRCEYCEELVSCCNTTSSERAQNEVGEPLLSQLADEARALIRVVEIEKAFRCEYCEDVFYLESGLNSHRAIHKGVKNPFTCHICKVSFATYSRCTTHKTTHGFYKRSLADAKKQVDAKKQADGPSQTEADGSTRSATGILGYGDFPVVKHFLCEDCGRSYLHWTYLQVHRRMKHANENFLYKCNQCELTFPNSWSLAYHRKKVHGKNGADDPGIAANKSGTEDYSWSLAYHRKKVHGKNGADDPGIAANKSGTEDYSWSLAYHRKKVHGKNGADDPGIAANKSGTEDYRIPCRDCDEVLPNKTALYKHRKKEHSDGMYPNSESEATGGACPHCPATFTHTTDLHKHVKEIHGKDEDYGNKTSADACPRRPHVCPVCGHAFRTLSMRNEHLRVHTGERPFPCDVCGVAFRRSTAMRNHRLIHTGVRAWACGRCPKRFRIRSDLRTHLRLKHPATIVVVEMEGLNPSSEEVLQALAAQNVPHDKLIDITKMSFTKGSTSVIPSCARALSALNNVPRTHVACIKPTPAPMLDDLPARRGRGIAKNPRRPKILQRGEVDSQDNADYPIDGAEELSDLNVQLLLRDGVLVNGNQMVQLQLDDPILMEYPPDRGT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-