Msep028133.2
Basic Information
- Insect
- Mythimna separata
- Gene Symbol
- -
- Assembly
- GCA_030763345.1
- Location
- CM061193.1:8592479-8611717[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.023 2.2 9.9 0.1 1 23 208 231 208 231 0.95 2 12 0.0051 0.49 12.0 3.3 1 23 238 260 238 260 0.98 3 12 1.1 1.1e+02 4.6 0.6 1 23 264 287 264 287 0.96 4 12 6.9e-05 0.0065 17.9 1.2 1 23 326 348 326 348 0.98 5 12 0.0058 0.55 11.8 1.3 3 22 360 379 359 383 0.89 6 12 9e-05 0.0085 17.5 0.4 1 23 424 446 424 446 0.98 7 12 9e-05 0.0085 17.5 0.4 1 23 454 476 454 476 0.98 8 12 0.018 1.7 10.3 0.5 2 22 485 505 484 509 0.90 9 12 3e-05 0.0029 19.0 0.4 1 23 517 540 517 540 0.91 10 12 0.00031 0.03 15.8 3.4 1 23 546 569 546 569 0.96 11 12 0.0023 0.22 13.1 3.4 3 23 578 599 576 599 0.92 12 12 0.019 1.8 10.2 3.3 1 23 605 628 605 628 0.96
Sequence Information
- Coding Sequence
- ATGGATCCCgaagataatattatttgttgtgGTTGCCTCAGTACCGGTCGGAAAATGAAACTTCTAGTGGAGTACTGGAAAAAGCAATCTTTTATGCAAATTATTAGCGATTTAGCTTTTTCAGAAGCAGACAGTATACCCCTATGGCTGTGCTGGGAATGTGATGCCCGGATGATCGGCTTCACTAAGTTTAAGCTACAAGTCAGGACTTCCTACTCTCTGTTCTATGATTATGTTAaacagAATACGAACCTATCAAAACTACAGCCAGCCCAAAGACTGACAACACACAAACTACACAACTTCACACTACAAAACAACGAACAACAACTACAACAATTCCAAATAATAACAACAGAAAACAACGAACAACCCGAATCCCCAGAAAACATTGACGTTTACACCAATACTGGGGATTCGAATTCCGAAGACGAAAAACCAGTAATGAGTCTAGCGAAAAAACAGAAACGGGTGAACAGGATTATTTTAGGTGgaattaaaaagaagaaaaaacggAAACGGAAAGAAGTGGAGTTGTATAAAGAGATTGAGTTGAGTGAAGAAGAGTTGAAAGAAGAAAGGAAGTTAGCTATGATGAGAGAAGATTATGTTAATGCTATGTTTCGGTGTGAAAGATGTATCCTGTCTTTTCCTAATGCAGAGGATTTGAAAGACCATGTTAGTGTGAAACATGAATTGAACTCAAACAACTTCAAATGCGCCATCTGCGAGTGTACGTTCAGTTCAGAGGTGTCGTACAACTACCACACAAACAAACACAGGCGCCGCTACGAGTGCGCGTCGTGTGCGGAGCGCTGTGCCAGTAAGAGAGCGGTGCTCAAGCATTATGAGATGTCACATTATCATGGgCCATCAATAGAAATCGACGTTCAAAGTCATCAGCAACAAAATGGCGGAACAACTGATGATGCagaaggcacggaggaaaatggTACAAAACAGTCGTCAGCGACATTTTCCTGTGAGTTCTGCGATAAGAGTTTTCGTTGGAAGGCGTCACTTCGGAAGCACGTTGAGACGCACCGGATAGAGACCGGACAGAAACGGAAGCCTTACTGTGAACCGTGCAGGTTATCGTTTACAAACACATCGAATTTACAGAAACACGTAAAGACTAGCTCAAAACATCAAATACAACTAAAACTAAGGAAACTGACAGAATCGCTTCCCGAAGACTCTTCAAACCCTGAGAAACATCAGCAGTTCATAGACCAGATCAAGTGTTCAGTGAACAGCGCTAAGGAGAAGTATCCATGTCCTCAGTGTGACAAGAAGTTCCAGTGGCGAGGAAACCTGCTGAGACATCTCAATAGTCATGTCGCTAGCGCTAAGGAGAAATACCCGTGTCCTCAGTGTGACAAGAAGTTCCAGTGGCGAGGAAACCTGCTGAGACATCTCAATAGTCATGTCGCTAGAGCGAACGGCGAGTTAGTCTGTGAACCGTGCAACCGAACATTTTCGTCTATAGCAACTTACAAGCAACATATGAAAATTAGTAGGAAACATGTCAGCGAAAATGATTTCAAGTACATGTGCAGTGATTGTGGCAAACGTTTCGCCAACAAAACCCGTCTCAAAGACCACGTGGACTGGGAGCATTTGAAGAACTACGTGCACACCTGTCCTGTCTGTCAGAAGgTGTTCAAAAGCCATACGTCATTATATCTACACAAGCAAGTGGTACATAAGAAGGATAATGCTGAACATCTGTGTGACCACTGCGGGAAACCTTTCCCGAACCAAGCCAAACTCCGTTGTCACATGATGGCGCTCCACAGCTCGACGTCGGCCTACAAATGTAACACGTGCGGCGCGCGGTTCAGTTGGCTGTCGTGTCTGTCGCGCCACAACAAGAAGCTGCACCCCAATCTCAACCCTATGCCTCACAGATAA
- Protein Sequence
- MDPEDNIICCGCLSTGRKMKLLVEYWKKQSFMQIISDLAFSEADSIPLWLCWECDARMIGFTKFKLQVRTSYSLFYDYVKQNTNLSKLQPAQRLTTHKLHNFTLQNNEQQLQQFQIITTENNEQPESPENIDVYTNTGDSNSEDEKPVMSLAKKQKRVNRIILGGIKKKKKRKRKEVELYKEIELSEEELKEERKLAMMREDYVNAMFRCERCILSFPNAEDLKDHVSVKHELNSNNFKCAICECTFSSEVSYNYHTNKHRRRYECASCAERCASKRAVLKHYEMSHYHGPSIEIDVQSHQQQNGGTTDDAEGTEENGTKQSSATFSCEFCDKSFRWKASLRKHVETHRIETGQKRKPYCEPCRLSFTNTSNLQKHVKTSSKHQIQLKLRKLTESLPEDSSNPEKHQQFIDQIKCSVNSAKEKYPCPQCDKKFQWRGNLLRHLNSHVASAKEKYPCPQCDKKFQWRGNLLRHLNSHVARANGELVCEPCNRTFSSIATYKQHMKISRKHVSENDFKYMCSDCGKRFANKTRLKDHVDWEHLKNYVHTCPVCQKVFKSHTSLYLHKQVVHKKDNAEHLCDHCGKPFPNQAKLRCHMMALHSSTSAYKCNTCGARFSWLSCLSRHNKKLHPNLNPMPHR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00906467;
- 90% Identity
- -
- 80% Identity
- -