Basic Information

Insect: Mythimna separata
Gene Symbol: -
Assembly: GCA_030763345.1
Location: CM061187.1:8228798-8246930[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.32 30 6.4 1.0 2 20 34 52 33 54 0.93

2 13 0.82 78 5.1 0.5 1 12 217 228 217 237 0.83

3 13 0.64 60 5.4 0.0 1 19 373 391 373 391 0.97

4 13 0.00048 0.045 15.2 1.0 1 23 398 420 398 420 0.98

5 13 0.0037 0.36 12.4 2.9 1 23 435 457 435 457 0.99

6 13 0.35 33 6.2 0.7 1 23 482 503 482 503 0.87

7 13 0.00032 0.03 15.8 0.3 3 23 511 531 509 531 0.96

8 13 0.00091 0.087 14.3 2.3 1 23 547 569 547 569 0.98

9 13 1.7e-06 0.00016 23.0 4.5 1 23 575 597 575 597 0.98

10 13 0.00062 0.059 14.9 5.2 1 23 603 625 603 625 0.97

11 13 1.1e-05 0.001 20.4 0.4 1 23 631 653 631 653 0.98

12 13 0.00074 0.07 14.6 0.6 1 23 657 679 657 679 0.97

13 13 0.00023 0.022 16.2 0.1 1 23 687 710 687 710 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.32	30	6.4	1.0	2	20	34	52	33	54	0.93
2	13	0.82	78	5.1	0.5	1	12	217	228	217	237	0.83
3	13	0.64	60	5.4	0.0	1	19	373	391	373	391	0.97
4	13	0.00048	0.045	15.2	1.0	1	23	398	420	398	420	0.98
5	13	0.0037	0.36	12.4	2.9	1	23	435	457	435	457	0.99
6	13	0.35	33	6.2	0.7	1	23	482	503	482	503	0.87
7	13	0.00032	0.03	15.8	0.3	3	23	511	531	509	531	0.96
8	13	0.00091	0.087	14.3	2.3	1	23	547	569	547	569	0.98
9	13	1.7e-06	0.00016	23.0	4.5	1	23	575	597	575	597	0.98
10	13	0.00062	0.059	14.9	5.2	1	23	603	625	603	625	0.97
11	13	1.1e-05	0.001	20.4	0.4	1	23	631	653	631	653	0.98
12	13	0.00074	0.07	14.6	0.6	1	23	657	679	657	679	0.97
13	13	0.00023	0.022	16.2	0.1	1	23	687	710	687	710	0.96

Sequence Information

Coding Sequence: ATGGGAGGCCAGGCGTTCAATTGCTCCCTTTGTTGCAATGCTACTTTTGGTTCTAAGCAATCTCTACTTGAACATTTTACCGCTATTTTAGAGAATATATACTGTCCTGTATGTAAATCCAAATGTAGTTCATTAGCTCACCTTGTAGAGCACCTGGCTCACGACAATTGCCAGCCACCTAACAATGTACATACTATTATATTTGAGCGACAAATACAACCGACAACAAATGAGGAAAATGTAGAAAACTCATCAGTTATTGAAAATTCTCATATTAAAGTTTATCAAAATGaaaTACAAACTAATGATGGAACTCAATTTGCAACAGAACAAACTTATGAAGCCCAGGTGGATCCAAATGATGCCAATAAAATGTATGTGGAGTTATTTAGCAAACAGTTGAAACCATGTCTACAAACTCGGGAATTTAAACTGGTGAAGGAAAATGGGGAAAGCCGGTACATGATAGTCACTCAAGAAGACGCTGACTTGACTGCAGGAAACACTATTGTGactaaacaaaatattgatGGAACTATTTCTCTGACTACAGTTAAAGATATGAACCTGGAATCAGAGAATTTAGTTACACCAGAAAAGCAACAAGAAAACACTGAAGGAATTCCAGAAGAAAGTCACGAGGAGATCTACAGCTGCAACACTTGCAAAGTGTCCTTCTCATCTGTTATAGAGCACATACAGAACTATCATAATGATCAGGATGTTGTTGTTGAGGAGCCAATGGAAGAAACTCAGAGCGAAACAGTTCCTATAGAATATGAAGCAATGGAGAGTGAAGACACGTTGGTGGCTGACAAGCAGGCGCCTCGTCGCGTCATCACCGACACCGGCGACATTGTGGAGGAACCTCTCATCTTCAAATCTGAAACACAAGTTATGGAGCCGGATCCCCTGACCTTGAATGAAACGCAAGAACCAAGTAAACCGAAGGAAAATAAATTGCGCGTCATAACGAAACGTTTACTGCAAGTGGACAAACTTTGCGATAGCGTCATCAAGGAAGCCATTCAAACTGACGCCAAAGaTAAAACTGGGCCTTACCACAAAGTGATCGTCAAAGAGGTGCAAACGGACAGCGGTTTCGCGATCAAGATGTACCAATGCTTAGCGTGTGACATTTCCGTCACCAATTTGGATGAGTTCAAAATACATCCTTGTAAAGTATtaaaatatccGTGTCTGCACTGTCCTGTGGCGTATGAGAGCTCAAAATCGCTGTGTGCACACATGAAGGCTCATAAAGTTAAAACAACAGAAACGATCGTCCCTGGGCCCATATCGTACGAGTGTTCAGTTTGCTGCACAGTCTTCCCAACCAACAAGTCTTTGAAGCTACACAAACGGATGCACGATCCAGTCAAaTCTCGTCCCATAGAGCCTCCAGTGGAAAACAATGACGGTTCAGAAGTGAGCGAAGGCCGGTACCGATGTACGATCTGCAACAAGATGATCCCCAACGACTACAAGACGATCCACCAGAACTCGCACAAGACCTCGCAGAAGATGAATTGCGGCATCTGTAATAAGAAGTTCACTTCTATCGAGTATCTGGAGATGCACACTAATGTACATAATGTTGATAAGGCACCATTGAACGCTCAAGACAAGAACCTACCATACAGCTGTTTGTATTGCAACAGAAGATTTGCTAGACCGCACGAAAAAGTGAAACATGAGAGAATACACACAGGTGAAAAGCCCCACTCTTGTGAGATCTGCGGCAAGTCGTTCCGCGTGTCCTACTGCCTCACACTGCACATGCGCACGCACACCGGCGCGCGGCCGTACGCCTGCCCGCACTGCGGCAAGAGGTTCAAGGCGCACAGCGTGTACAATCACCACCTGCTCACCCACTCAGAAGTGCGCGCCTACAAGTGCCCCTTCTGCCCCAAAGCGTTCAAGACGTCCGTGCAACTAGCGGGACACAAGAACTCGCACACCAAACCGTTTGCTTGCCAACATTGTAATCGGCCATTCGCATCCCTATACGCGGTTCGCGTGCACACCGAAACGCACGCACGTCAGAACAACCTGAAGTTCTCGTGCGAACTGTGCGGCGCGAGCTACGCGCGGGCCTTCGCGCTGAAGGACCACATCAAGCAAGCGCACAGTGAACAGGAAGAACAGGTGCAGTCTCCATCACAAACGATCGCTGGCGATGATGATTGGATGATGAAAGACAACCAGGATGCTGACGGGATTCAGGCTCTCAACAAAGATTTGTCTCATGAGATAGACCTGGGAATGAGTGCCAACGAACTAATAGTTCCTTAA
Protein Sequence: MGGQAFNCSLCCNATFGSKQSLLEHFTAILENIYCPVCKSKCSSLAHLVEHLAHDNCQPPNNVHTIIFERQIQPTTNEENVENSSVIENSHIKVYQNEIQTNDGTQFATEQTYEAQVDPNDANKMYVELFSKQLKPCLQTREFKLVKENGESRYMIVTQEDADLTAGNTIVTKQNIDGTISLTTVKDMNLESENLVTPEKQQENTEGIPEESHEEIYSCNTCKVSFSSVIEHIQNYHNDQDVVVEEPMEETQSETVPIEYEAMESEDTLVADKQAPRRVITDTGDIVEEPLIFKSETQVMEPDPLTLNETQEPSKPKENKLRVITKRLLQVDKLCDSVIKEAIQTDAKDKTGPYHKVIVKEVQTDSGFAIKMYQCLACDISVTNLDEFKIHPCKVLKYPCLHCPVAYESSKSLCAHMKAHKVKTTETIVPGPISYECSVCCTVFPTNKSLKLHKRMHDPVKSRPIEPPVENNDGSEVSEGRYRCTICNKMIPNDYKTIHQNSHKTSQKMNCGICNKKFTSIEYLEMHTNVHNVDKAPLNAQDKNLPYSCLYCNRRFARPHEKVKHERIHTGEKPHSCEICGKSFRVSYCLTLHMRTHTGARPYACPHCGKRFKAHSVYNHHLLTHSEVRAYKCPFCPKAFKTSVQLAGHKNSHTKPFACQHCNRPFASLYAVRVHTETHARQNNLKFSCELCGASYARAFALKDHIKQAHSEQEEQVQSPSQTIAGDDDWMMKDNQDADGIQALNKDLSHEIDLGMSANELIVP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01440338;
90% Identity: iTF_01031362;
80% Identity: -