Basic Information

Insect: Mythimna separata
Gene Symbol: -
Assembly: GCA_030763345.1
Location: CM061197.1:7244833-7255337[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.54 51 5.6 2.7 1 23 17 40 17 40 0.90

2 20 0.045 4.3 9.0 0.3 3 23 142 163 140 163 0.91

3 20 0.13 12 7.6 0.3 2 23 189 211 188 211 0.93

4 20 0.0012 0.11 14.0 0.3 2 23 234 255 233 255 0.97

5 20 0.00088 0.084 14.4 0.0 1 23 259 281 259 281 0.98

6 20 8.6e-05 0.0082 17.6 1.8 1 23 286 309 286 309 0.97

7 20 0.079 7.5 8.3 0.5 2 23 317 339 316 339 0.94

8 20 8.2e-05 0.0078 17.6 2.2 2 23 347 369 346 369 0.96

9 20 7.5e-05 0.0072 17.8 2.5 1 23 375 397 375 397 0.98

10 20 4.9e-05 0.0046 18.4 0.6 1 23 403 425 403 425 0.99

11 20 0.00015 0.014 16.9 4.4 1 23 431 454 431 454 0.97

12 20 1.7 1.6e+02 4.1 0.2 1 23 604 627 604 627 0.90

13 20 0.023 2.2 9.9 0.0 2 23 653 675 652 675 0.97

14 20 0.014 1.3 10.6 1.7 1 23 795 818 795 818 0.93

15 20 6.9 6.6e+02 2.1 0.1 2 23 845 867 844 867 0.90

16 20 0.013 1.2 10.7 0.5 2 23 890 911 889 911 0.97

17 20 0.00087 0.082 14.4 0.4 1 23 915 937 915 937 0.96

18 20 0.0019 0.18 13.3 1.2 1 23 942 965 942 965 0.98

19 20 0.064 6.1 8.5 0.5 2 21 973 992 973 995 0.88

20 20 0.00022 0.02 16.3 2.1 1 21 1001 1021 1001 1022 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.54	51	5.6	2.7	1	23	17	40	17	40	0.90
2	20	0.045	4.3	9.0	0.3	3	23	142	163	140	163	0.91
3	20	0.13	12	7.6	0.3	2	23	189	211	188	211	0.93
4	20	0.0012	0.11	14.0	0.3	2	23	234	255	233	255	0.97
5	20	0.00088	0.084	14.4	0.0	1	23	259	281	259	281	0.98
6	20	8.6e-05	0.0082	17.6	1.8	1	23	286	309	286	309	0.97
7	20	0.079	7.5	8.3	0.5	2	23	317	339	316	339	0.94
8	20	8.2e-05	0.0078	17.6	2.2	2	23	347	369	346	369	0.96
9	20	7.5e-05	0.0072	17.8	2.5	1	23	375	397	375	397	0.98
10	20	4.9e-05	0.0046	18.4	0.6	1	23	403	425	403	425	0.99
11	20	0.00015	0.014	16.9	4.4	1	23	431	454	431	454	0.97
12	20	1.7	1.6e+02	4.1	0.2	1	23	604	627	604	627	0.90
13	20	0.023	2.2	9.9	0.0	2	23	653	675	652	675	0.97
14	20	0.014	1.3	10.6	1.7	1	23	795	818	795	818	0.93
15	20	6.9	6.6e+02	2.1	0.1	2	23	845	867	844	867	0.90
16	20	0.013	1.2	10.7	0.5	2	23	890	911	889	911	0.97
17	20	0.00087	0.082	14.4	0.4	1	23	915	937	915	937	0.96
18	20	0.0019	0.18	13.3	1.2	1	23	942	965	942	965	0.98
19	20	0.064	6.1	8.5	0.5	2	21	973	992	973	995	0.88
20	20	0.00022	0.02	16.3	2.1	1	21	1001	1021	1001	1022	0.95

Sequence Information

Coding Sequence: atGCGCTGGTCCAACGCTACTCTAATAAGACTTTGGGGAGATATGGGCTACATGTGTTGTTACTGTGAAGAGCAATACCATATGCCCGAAGATCTCAAAAAACACAACATACAGGACCACAAGTTTGATACAAAAAGCTCTTCCATTAATAACTTGAGCATGTACAATTATATAATCAAATTAGACATCACTGGTTTACAGTGCAACATATGTCTTGGACGGGGAACTAGGATAATCAGAATAGAAAAACCGACAAAAGCATCCGTTGAATTGAAGTTCATCTCAAAACTATCAGCGAGAAACCCAAACTCCATCTTAAAAGGCTCAATATCAGAAACTAACAAGAACAAAATgaatctaaaaaatatattactcaaTTCTAACGCTAGCCCCATAAGATGTAAAGACGGcaatggatatggctgttctttcTGCCCAAAACAGTTTCAGGAGccaactgctctcaaaaagcaCTTTCTGGAAGAACACAATAATGACAAACTGATAAAGTACACGACTGCTAAGCTATTTGAACACGTCATCAAGTTAGATATAACTTATTTGAACTGTGCTCTTTGTGACAAAGACGTTCAACATTTGGACGAACTTGTAAAACATCTGAAGGATGAACACAACAAGCCGATGTATGTAGACGCCAAAAGTCAAATCGTCCCATTCAGATTCGACTCGCCCGAACTAAAATGTGTCATATGCTCCGCAGAATTCAGTTCATTCAAACTTTTACAGGAACATATGAACTCACATTTCGGTAATTATATTTGTGAAATATGTGGAGCTGGCTTCGTGACGGACAGACTTCTGGTAAGTCACGTCAGACGTCATGATAGTGGAGAATATAAATGTGAGCAATGTGACAAGACGTTTACGAACCAGATTAAAATACGCGAGCATGTGAAGCGAACACACTTGGGTCAGAGTAAGAGAAATAAGTGCAATTACTGCGAGGAAAGGTTCGTTGATTACTGGAAGAAGATGGACCATATGGTGAAAGAACATGGGATGCCTCCTGTTGTCCTCAAATGTTCGGCTTGTGACCGAACCTTTAGTAACCAGAGGTCCTTATCGCGGCACACGAAGAAAGATCACCTCCTGGAGAGAAGACATAAGTGTAGTGAATGTGATATGAGATTCTTTGGAAAGAGTGGTTTGCAGAAACATATGGCCAAGCATACGGGGTTGAGGCAGTTCCGATGTGAAGTATGCTTAAAGGCTTATGGAAGGAAGAATACGCTTAGAGAGCATATGAGGATCCATGCAAATGATAGGAGATTCGCTTGTACGCACTGTGGCCAAGCGTTCGTACAAAAGTGTAGTTGGCGGAGTCATATGCGTTCTAAACACGGTGAACAACGGAACACACCATTAAAAGAAGATAATTTAACTAAACGGGAACCTGTAGTGAACCTTCAACCTACCCCTGATAAACCACGGAAGGAAGCAAAGAGAAACTCTGATGATCTAAAAACGATACTTACATATTCTAATGCCAATTTAATAAGAAACAAAGATAGCGATGGATACCGCTGTCTTCGCTCCAGAACTATTCGCGAATCTCCAATAATcttcgaagaagaagaaaaaggcaTCACTTTAGACAGGAAGCTGAACTATGCTTCCTTCGTATCCATCCGTCCGGTAGGCAAGAAGACAATACCTTGGGTGCGCGAGCAGCAGAAAAAGATAGCCCAAGAGAGACGGTTGACGGAACTGGATTGGCAGTTCGACAACATTAAGACGGTCCTGAAATGCTCCAACGCCTCGCCTGTCCGTTGTCGTGTAGGCTCCAGATTCGCCTGCAGTTACTGCCTTGACCAATTCCAAAACCCGACAGAATTGAGAATCCATTCCTTACAAGTCCATACTAATGACAGACCAGAGTTCTTTAACGCTAGATCTTTGTCTCGACACATCGTTTATTTGGACATTACTGGcttaaaatgtaaaatttgtGACCAGGCTATAGATGGACTGGATCAGTTATTGGACCATTTGAAGACTGTTCATGATGAGTTGATTTATAAACAGATAAAGAACCAGATAATTCCATTTAAGTACGATGGCAGGAAGCTTCTGTGTGGCGTTTGTGCAGCTGACATAGGAGAGCACAACGATTTCCAAGATCATATGTCGGAACACTACCGGAATTATATTTGTGGGTTCTGCGATTCTGGTTTCGTTATTCGCAGTATCGACCCGGAATCCGTTCTGATCGAGATCGAAGTCGACACTTTATCATTTCTCACTTCTGAAGATGAGACCGAAGTGTCTACGCTCAACGAAGTCGATAAACACCGGGAAAATATCCGAACAATCCTCCTTGCAAGTAACGCTACGCCGATCGGAAGATATGGAAGTCTTGGATACAACTGTTGCTACTGTACTGAAGTCTACTCAGCTCCCAGGGATCTCAAAAAGCATACAATCGAACGACACGACGAAGGAAACATCTCTTCCTATATGAATAACTATACTATGCTTAACTACATCGTCAAACTAGACATTACTGGTTTACGCTGCGAAATGTGCATGAAGCCTTTTATCAAACTCCAAGGAATTATTGATCACCTGACGGTAGAACACCAGAAAATCTTCCACACAGATATTGGAAGTCACATCGTCCCTTTTCGGTTCGATTCCGATGTGCTGCAGTGTGTCGATTGCTCCTTCGAGTTCAACAACTTTAAGGTCTTACTTGAACATATGAATACTCACTACGGTAACCACATCTGTGAGGTCTGCGAAGCAGGTTTTGTTAACAGAAGAATGTTACAAGCCCACATGTATAGACACAAAACTGGAGTCTTTAAATGTGGCTTTTGTCGCAAAGTTTTCGATACTCGAATCAAAATGAAAGTTCATGAACGGATGGTCCATTTGTACGTTAAAAAAAGACCGAAGTGTACTATTTGTGAGAGGAAGTTTAGTGACTTCCAGAAAATGATACAGCACGAGGCTGATGATCACGGTCTGAAGAGAGAGTTTAAATGTGAAATTTGTAGTAAAATGTTTACTACACAAAGATCTTTTACGATTCATAAGAAGTTTTACTGTATTCCTAATGATTAG
Protein Sequence: MRWSNATLIRLWGDMGYMCCYCEEQYHMPEDLKKHNIQDHKFDTKSSSINNLSMYNYIIKLDITGLQCNICLGRGTRIIRIEKPTKASVELKFISKLSARNPNSILKGSISETNKNKMNLKNILLNSNASPIRCKDGNGYGCSFCPKQFQEPTALKKHFLEEHNNDKLIKYTTAKLFEHVIKLDITYLNCALCDKDVQHLDELVKHLKDEHNKPMYVDAKSQIVPFRFDSPELKCVICSAEFSSFKLLQEHMNSHFGNYICEICGAGFVTDRLLVSHVRRHDSGEYKCEQCDKTFTNQIKIREHVKRTHLGQSKRNKCNYCEERFVDYWKKMDHMVKEHGMPPVVLKCSACDRTFSNQRSLSRHTKKDHLLERRHKCSECDMRFFGKSGLQKHMAKHTGLRQFRCEVCLKAYGRKNTLREHMRIHANDRRFACTHCGQAFVQKCSWRSHMRSKHGEQRNTPLKEDNLTKREPVVNLQPTPDKPRKEAKRNSDDLKTILTYSNANLIRNKDSDGYRCLRSRTIRESPIIFEEEEKGITLDRKLNYASFVSIRPVGKKTIPWVREQQKKIAQERRLTELDWQFDNIKTVLKCSNASPVRCRVGSRFACSYCLDQFQNPTELRIHSLQVHTNDRPEFFNARSLSRHIVYLDITGLKCKICDQAIDGLDQLLDHLKTVHDELIYKQIKNQIIPFKYDGRKLLCGVCAADIGEHNDFQDHMSEHYRNYICGFCDSGFVIRSIDPESVLIEIEVDTLSFLTSEDETEVSTLNEVDKHRENIRTILLASNATPIGRYGSLGYNCCYCTEVYSAPRDLKKHTIERHDEGNISSYMNNYTMLNYIVKLDITGLRCEMCMKPFIKLQGIIDHLTVEHQKIFHTDIGSHIVPFRFDSDVLQCVDCSFEFNNFKVLLEHMNTHYGNHICEVCEAGFVNRRMLQAHMYRHKTGVFKCGFCRKVFDTRIKMKVHERMVHLYVKKRPKCTICERKFSDFQKMIQHEADDHGLKREFKCEICSKMFTTQRSFTIHKKFYCIPND

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -