Msep025767.1
Basic Information
- Insect
- Mythimna separata
- Gene Symbol
- -
- Assembly
- GCA_030763345.1
- Location
- CM061190.1:5506288-5538982[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 9.9 9.4e+02 1.7 1.5 6 15 58 67 55 70 0.76 2 13 0.39 37 6.1 0.2 1 23 501 523 501 523 0.95 3 13 0.00033 0.031 15.7 0.4 1 23 536 558 536 558 0.97 4 13 0.00047 0.044 15.3 1.9 1 23 564 586 564 586 0.96 5 13 0.00047 0.044 15.3 1.9 1 23 659 681 659 681 0.96 6 13 1.6e-05 0.0015 19.9 2.4 1 23 688 710 688 710 0.99 7 13 5.6e-06 0.00053 21.3 0.4 1 23 716 738 716 738 0.93 8 13 1e-07 9.7e-06 26.8 0.1 1 23 744 766 744 766 0.98 9 13 7e-06 0.00067 21.0 1.9 1 23 772 795 772 795 0.96 10 13 0.00014 0.013 16.9 2.6 1 23 801 824 801 824 0.96 11 13 0.00019 0.018 16.5 2.3 2 23 831 852 830 852 0.97 12 13 2.8e-05 0.0027 19.1 1.1 1 23 858 880 858 880 0.97 13 13 0.0034 0.32 12.6 0.1 1 23 886 910 886 910 0.94
Sequence Information
- Coding Sequence
- ATGAATGTATGCTGCTTCATCTGCGACAACAAGGCTGGTCTCTCACTGCGCAATGCTTCGAGCCTGTTTGGAGAACATAACACATTGCAATCCGGTAAGAAAGTCTCGGAGGTAGTGAGTGAGATAGTGGGTAAGCCGGTGGTGGAGAATAAGGTTCACACCAACATACTGTGTAAGAAGTGCTTCAAGACTTGCTCCGAGTATGACAGCATTCACGTCAGattacaaacaataaaaacagaattacTAGCACAATTCAAAGAATCATTACCTAATCATAATTTAGATTATGACAACTATGAGAAGAACGCGTGCTTCCCGCCGAAACCCAAGCCGGTGGCGAAGAAGATAGTGTTGCCAGCTTCGAAATTACAACCTATACCACCGGATTTGTTGCTCAAGGTTGGCAAGTTAGCGTCGTTTACTAAACCCAACATGATATTGCCACAGATTAAGCCAACCACAGCATCAACCTTAAACCTAAAAGTAACCGTCGGATCATCAGTCCtaacacaaacaataaaaacatccACTAGCAAACCGGTAGAAAAACCCAATTTAGACTCAAATTCCCTTCTCAACTCCCTCACAAGCGCCTTGAAAGATGACCTCGACGATATGGTGACTTCGCAAGCCAATATAGACTCTATGAACCAAAAGAATTCGATTTTGGGCTTCAATGTGAATTCTTTGCCGAAAGACTTTCTTTCCGGGGCTATTTTGACGAAGATTGAGGGGAAGGAAAATGATAAGGATGGGGATGGAAAGGAGGATGAAGGGAATGATGTGAATGATGATCAACCCATGGAGATTGATGAAGattgtcTATCTGTGGTTCCTGTAACAAGTACGTCTGGCGGGAACCTGGTGCTACAAGTTGAAGGATTACAGTCTAAATCGGAGCCAGCGCCCGAAGTGAGTGAATACCTGAACTTACCGCTACTGGATGGCGCGGACGGAGAACTGAGCGACGCACAAAAGTACATCCTCGGCAAGCTGGAGATACTCAACGAGGGCgatgaggatgatgatgatgaggagggACACACAATAGTGGTGGACAGTGAAAACGGTTCGATTCTTCGAATGGTGGCCGGACAGAAGTTCATATACGAAGGCGGTGAGATATCACTGGTGAtgcctgatgatgatgaacaacaAGAGAATGATGGTGATCAACTCGAGAATGGTGATAGTCAAGatTCTAATGATGAATCTCAAATAGAGTTACAAGTGTCTGGTGATGAAGAAACAGCGAACGCTATCATCGCTGCTGCTCAAGaacaagGCGGGGCCTTCATAAAAGTGGAGTCTGGCGAGATGTTCCGCGTGAAGTCCGTGTCGTCTGCGCAGCGAGCCGACGCGCTGCAGATCGTCGCTCAGGAAGGCAACCAGTTCAAGTGTCTGCTGTGTGAGAAGAATGATGAAACCCCACCAAGTTCTACGCTTGATGCTGACTCGATGATGCGCCACCTGAAGTCAGTTCACGACGCCAGGATATACTTGTGTCGTTTCTGCGGGGCGGTCATGAGGAGACGCACGGAGTATGCCACGCATATAGCGTCACACGCAAACGACAAGTCTGCAGGCGGGTCCAGGGCGGCTCACCGCTGCGGCGTGTGCGGCAAGAGCTACAGTTCGCGCACGCTACTGGGCGAGCACGCCAACGTGCACTCGGGCGCGCGCCCGCACGCCTGCGCCGTCTGCGGGAAGGCCTTCGCCTCCAAGTACACGCACCAGGCGCACATGAAGACCCACGCGGTGAGTGCTAGCGACCTCACGCCACGCCTGGCGTGTCCCGGCCGAGCACGCCAACGTGCACTCGGGCGCGCGCCCGCACGCCTGCGCCGTCTGCGGGAAGGCCTTCGCCTCCAAGTACACGCACCAGGCGCACATGAAGACCCACGCGCGACCTCACGCCACGCCTGGCGTGTCCCGGCCGAGCACGCCAACGTGCACTCGGGCGCGCGCCCGCACGCCTGCGCCGTCTGCGGGAAGGCCTTCGCCTCCAAGTACACGCACCAGGCGCACATGAAGACCCACGCGATTCGTCCGCGCCCTTACAAATGCACTCAGTGCGGTAAATCGTTCCTCACGCAGCAAAACCTCAATCAGCACGAGAAAACACATTCGGGAGTCAAGGATTTCGTCTGTAATGTATGCAATAAAGCCTTCAGTACACAGCACAATTTGGAAGTTCACGGAGTAGTGCACTCGGGGAATAAAGCGTTTGTCTGCAGTGTCTGCGGTAAAGCGTTCGCGAGGAGGGCTGAACTAAGAGATCACATGCGGATACATACGGGTGAGCGTCCATTCTCGTGTGACATCTGTGGCGCCCGCTTCACACAGCGCTCGAACCTACACTCGCACCGGCGCGCCACGCACTTCGACGACAAGAGATATCACTGCGAGCTGTGTCCTAAGAGGTTTAAGAGGAGGAGACTACTGGAGTACCACATAAAGGCGTCGCACACTGGCGAGCGGCCGCTCAAGTGCGGCGTGTGCCACCTCTCCTTCGTGTACCCCGAGCACTACAAGAAACATGTGCGCATACACAGCGGCGAGCGGCCCTACACCTGTGAGATCTGCGGCAAATCGTTCAACTCGCTCGACAACCGCAACACGCACCGTTTCGTACATTCTGACAAAAAACCGTATGAATGTGTCGTGTGCGGCGCCGGGTACATGCGCAAGCAACTTCTCTACGCGCATATGAACACCAGCGGACATTTGGCAGAATCGATAGTAGTCAATCAACCTAGAGTCATCAAAGTTACTGAAAATaatCAACCGGCTGAAATTACTCATGTAGAAgctaaaaatagtaaatttgaATCGatatttGACCCCAACGAATTGGAGGCCAGCGTTAAGTCTGTCGTGAAATCGGAGACGGAAGTGAACCTGAGTGATGCCAAGTTCTATATCACAGAAGATAAGAAGATTATATTACAAGATAGCGACAAAACAACATTGAACCTGATACAAGAAGGCGATGAGTCGACGTTGCTAACTATACATAATATAGGAGAGAGAGCTGAGGGCACTATTCTAGAAGCGGTAGATGTTGATCAACTCGGGGACCAGACTGAGatCGTAGCCAACGACGAAAACGGCGGCATGGTGCGTCTTATACAAATCAAGTTGCCGGACGGGAACAACGGCTGGGTCGCTATCAACCGTTGA
- Protein Sequence
- MNVCCFICDNKAGLSLRNASSLFGEHNTLQSGKKVSEVVSEIVGKPVVENKVHTNILCKKCFKTCSEYDSIHVRLQTIKTELLAQFKESLPNHNLDYDNYEKNACFPPKPKPVAKKIVLPASKLQPIPPDLLLKVGKLASFTKPNMILPQIKPTTASTLNLKVTVGSSVLTQTIKTSTSKPVEKPNLDSNSLLNSLTSALKDDLDDMVTSQANIDSMNQKNSILGFNVNSLPKDFLSGAILTKIEGKENDKDGDGKEDEGNDVNDDQPMEIDEDCLSVVPVTSTSGGNLVLQVEGLQSKSEPAPEVSEYLNLPLLDGADGELSDAQKYILGKLEILNEGDEDDDDEEGHTIVVDSENGSILRMVAGQKFIYEGGEISLVMPDDDEQQENDGDQLENGDSQDSNDESQIELQVSGDEETANAIIAAAQEQGGAFIKVESGEMFRVKSVSSAQRADALQIVAQEGNQFKCLLCEKNDETPPSSTLDADSMMRHLKSVHDARIYLCRFCGAVMRRRTEYATHIASHANDKSAGGSRAAHRCGVCGKSYSSRTLLGEHANVHSGARPHACAVCGKAFASKYTHQAHMKTHAVSASDLTPRLACPGRARQRALGRAPARLRRLREGLRLQVHAPGAHEDPRATSRHAWRVPAEHANVHSGARPHACAVCGKAFASKYTHQAHMKTHAIRPRPYKCTQCGKSFLTQQNLNQHEKTHSGVKDFVCNVCNKAFSTQHNLEVHGVVHSGNKAFVCSVCGKAFARRAELRDHMRIHTGERPFSCDICGARFTQRSNLHSHRRATHFDDKRYHCELCPKRFKRRRLLEYHIKASHTGERPLKCGVCHLSFVYPEHYKKHVRIHSGERPYTCEICGKSFNSLDNRNTHRFVHSDKKPYECVVCGAGYMRKQLLYAHMNTSGHLAESIVVNQPRVIKVTENNQPAEITHVEAKNSKFESIFDPNELEASVKSVVKSETEVNLSDAKFYITEDKKIILQDSDKTTLNLIQEGDESTLLTIHNIGERAEGTILEAVDVDQLGDQTEIVANDENGGMVRLIQIKLPDGNNGWVAINR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -