Msep021994.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Mythimna separata
Gene Symbol
-
Assembly
GCA_030763345.1
Location
CM061186.1:12389529-12401499[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 1.5 1.5e+02 4.2 0.2 1 20 9 28 9 30 0.93
2 25 1.5 1.5e+02 4.2 0.2 1 20 82 101 82 103 0.93
3 25 0.091 8.7 8.1 0.2 2 23 149 171 148 171 0.94
4 25 4.9e-06 0.00047 21.5 0.9 1 23 180 202 180 202 0.98
5 25 0.0028 0.26 12.8 0.8 3 23 210 230 208 230 0.96
6 25 9.4e-06 0.0009 20.6 2.6 1 23 236 259 236 259 0.98
7 25 9.4e-06 0.0009 20.6 2.6 1 23 284 307 284 307 0.98
8 25 9.4e-06 0.0009 20.6 2.6 1 23 332 355 332 355 0.98
9 25 9.4e-06 0.0009 20.6 2.6 1 23 380 403 380 403 0.98
10 25 9.4e-06 0.0009 20.6 2.6 1 23 428 451 428 451 0.98
11 25 9.4e-06 0.0009 20.6 2.6 1 23 476 499 476 499 0.98
12 25 9.4e-06 0.0009 20.6 2.6 1 23 524 547 524 547 0.98
13 25 9.4e-06 0.0009 20.6 2.6 1 23 572 595 572 595 0.98
14 25 9.4e-06 0.0009 20.6 2.6 1 23 620 643 620 643 0.98
15 25 9.4e-06 0.0009 20.6 2.6 1 23 668 691 668 691 0.98
16 25 9.4e-06 0.0009 20.6 2.6 1 23 716 739 716 739 0.98
17 25 9.4e-06 0.0009 20.6 2.6 1 23 764 787 764 787 0.98
18 25 9.4e-06 0.0009 20.6 2.6 1 23 812 835 812 835 0.98
19 25 9.4e-06 0.0009 20.6 2.6 1 23 860 883 860 883 0.98
20 25 9.4e-06 0.0009 20.6 2.6 1 23 908 931 908 931 0.98
21 25 9.4e-06 0.0009 20.6 2.6 1 23 956 979 956 979 0.98
22 25 9.4e-06 0.0009 20.6 2.6 1 23 1004 1027 1004 1027 0.98
23 25 9.4e-06 0.0009 20.6 2.6 1 23 1052 1075 1052 1075 0.98
24 25 9.4e-06 0.0009 20.6 2.6 1 23 1100 1123 1100 1123 0.98
25 25 9.4e-06 0.0009 20.6 2.6 1 23 1148 1171 1148 1171 0.98

Sequence Information

Coding Sequence
ATGGTAGTGAACACGGCCGACCCGCACTACTGCGCCGACTGCGAGATACAGTTCATGTCGTTTGCCGCCTTCACCACGCATCTCGGCAGCTCCTACAAACACGCCACCACTAATCTTTCATGTCGTTTGCCGCCTTCACCACGCATCTCGGCAGCTCCTACAAACACGCCACCACTAATCTGTAAGTACTCGTACTATAAGATAGAACAAAGCAACAAGATGCTAGTGAACACGGCCGACCCGCACTACTGCGCCGACTGCGAGATACAGTTCATGTCGTTTGCCGCCTTCACCACGCATCTCGGCAGCTCCTACAAATACGCTACCACTAATCTGTCGATAAAGCCGTCGCGTCGCAGTAAGACAGAAGAGCCCCGGGCACGCGGACGTCCGCGGCGCGGCGCGTGCTCCGAGATCGTCAACAACGGCCTCACCACCTCCAGCACCTGCGAAGTGTGCGGTAAATTCCTATCGAACGACGTGCAGGCGCGCAAGCACTACGAGTCGGAGCACCCCGACACCGAGTACCTCAAGCGGTACATGTGCGACGTCTGCGGACACACCACCAGGCAATACGCGAACCTGATAGTGCACATGCGCACGCACACGAACGAGAAGCCGTACGGCTGTCCGCACTGCGACCGCCGGTTCAACATGCCCAGCAACAGAGACAGGCATCTCGTCGTGCACACAGGTGAGAAGCGCTACCAGTGCCAGCACTGCAACCGGCGCTTCACGCAGAGCAGCGCCGTCAAGCTGCACATACAGACGGTGCACCTCAAGATACCCTACGCGCCCTGGAACAAGAAGAACAGGAAGCGACGCAAGGTGCACACAGGTGAGAAGCGCTACCAGTGCCAGCACTGCAACCGGCGCTTCACGCAGAGCAGCGCCGTCAAGCTGCACATACAGACGGTGCACCTCAAGATACCCTACGCGCCCTGGAACAAGAAGAACAGGAAGCGACGCAAGGTGCACACAGGTGAGAAGCGCTACCAGTGCCAGCACTGCAACCGGCGCTTCACGCAGAGCAGCGCCGTCAAGCTGCACATACAGACGGTGCACCTCAAGATACCCTACGCGCCCTGGAACAAGAAGAACAGGAAGCGACGCAAGGTGCACACAGGTGAGAAGCGCTACCAGTGCCAGCACTGCAACCGGCGCTTCACGCAGAGCAGCGCCGTCAAGCTGCACATACAGACGGTGCACCTCAAGATACCCTACGCGCCCTGGAACAAGAAGAACAGGAAGCGACGCAAGGTGCACACAGGTGAGAAGCGCTACCAGTGCCAGCACTGCAACCGGCGCTTCACGCAGAGCAGCGCCGTCAAGCTGCACATACAGACGGTGCACCTCAAGATACCCTACGCGCCCTGGAACAAGAAGAACAGGAAGCGACGCAAGGTGCACACAGGTGAGAAGCGCTACCAGTGCCAGCACTGCAACCGGCGCTTCACGCAGAGCAGCGCCGTCAAGCTGCACATACAGACGGTGCACCTCAAGATACCCTACGCGCCCTGGAACAAGAAGAACAGGAAGCGACGCAAGGTGCACACAGGTGAGAAGCGCTACCAGTGCCAGCACTGCAACCGGCGCTTCACGCAGAGCAGCGCCGTCAAGCTGCACATACAGACGGTGCACCTCAAGATACCCTACGCGCCCTGGAACAAGAAGAACAGGAAGCGACGCAAGGTGCACACAGGTGAGAAGCGCTACCAGTGCCAGCACTGCAACCGGCGCTTCACGCAGAGCAGCGCCGTCAAGCTGCACATACAGACGGTGCACCTCAAGATACCCTACGCGCCCTGGAACAAGAAGAACAGGAAGCGACGCAAGGTGCACACAGGTGAGAAGCGCTACCAGTGCCAGCACTGCAACCGGCGCTTCACGCAGAGCAGCGCCGTCAAGCTGCACATACAGACGGTGCACCTCAAGATACCCTACGCGCCCTGGAACAAGAAGAACAGGAAGCGACGCAAGGTGCACACAGGTGAGAAGCGCTACCAGTGCCAGCACTGCAACCGGCGCTTCACGCAGAGCAGCGCCGTCAAGCTGCACATACAGACGGTGCACCTCAAGATACCCTACGCGCCCTGGAACAAGAAGAACAGGAAGCGACGCAAGGTGCACACAGGTGAGAAGCGCTACCAGTGCCAGCACTGCAACCGGCGCTTCACGCAGAGCAGCGCCGTCAAGCTGCACATACAGACGGTGCACCTCAAGATACCCTACGCGCCCTGGAACAAGAAGAACAGGAAGCGACGCAAGGTGCACACAGGTGAGAAGCGCTACCAGTGCCAGCACTGCAACCGGCGCTTCACGCAGAGCAGCGCCGTCAAGCTGCACATACAGACGGTGCACCTCAAGATACCCTACGCGCCCTGGAACAAGAAGAACAGGAAGCGACGCAAGGTGCACACAGGTGAGAAGCGCTACCAGTGCCAGCACTGCAACCGGCGCTTCACGCAGAGCAGCGCCGTCAAGCTGCACATACAGACGGTGCACCTCAAGATACCCTACGCGCCCTGGAACAAGAAGAACAGGAAGCGACGCAAGGTGCACACAGGTGAGAAGCGCTACCAGTGCCAGCACTGCAACCGGCGCTTCACGCAGAGCAGCGCCGTCAAGCTGCACATACAGACGGTGCACCTCAAGATACCCTACGCGCCCTGGAACAAGAAGAACAGGAAGCGACGCAAGGTGCACACAGGTGAGAAGCGCTACCAGTGCCAGCACTGCAACCGGCGCTTCACGCAGAGCAGCGCCGTCAAGCTGCACATACAGACGGTGCACCTCAAGATACCCTACGCGCCCTGGAACAAGAAGAACAGGAAGCGACGCAAGGTGCACACAGGTGAGAAGCGCTACCAGTGCCAGCACTGCAACCGGCGCTTCACGCAGAGCAGCGCCGTCAAGCTGCACATACAGACGGTGCACCTCAAGATACCCTACGCGCCCTGGAACAAGAAGAACAGGAAGCGACGCAAGGTGCACACAGGTGAGAAGCGCTACCAGTGCCAGCACTGCAACCGGCGCTTCACGCAGAGCAGCGCCGTCAAGCTGCACATACAGACGGTGCACCTCAAGATACCCTACGCGCCCTGGAACAAGAAGAACAGGAAGCGACGCAAGGTGCACACAGGTGAGAAGCGCTACCAGTGCCAGCACTGCAACCGGCGCTTCACGCAGAGCAGCGCCGTCAAGCTGCACATACAGACGGTGCACCTCAAGATACCCTACGCGCCCTGGAACAAGAAGAACAGGAAGCGACGCAAGGTGCACACAGGTGAGAAGCGCTACCAGTGCCAGCACTGCAACCGGCGCTTCACGCAGAGCAGCGCCGTCAAGCTGCACATACAGACGGTGCACCTCAAGATACCCTACGCGCCCTGGAACAAGAAGAACAGGAAGCGACGCAAGGTGCACACAGGTGAGAAGCGCTACCAGTGCCAGCACTGCAACCGGCGCTTCACGCAGAGCAGCGCCGTCAAGCTGCACATACAGACGGTGCACCTCAAGATACCCTACGCGCCCTGGAACAAGAAGAACAGGAAGCGACGCAAGGAGTTAGAAACAGCGGGAATGTCGACGCCGCTGATCCTACCGCCGCCCAACAAGCTGGCCGCTTACGACGCGCCAGCGGATTATCTCAACGCGTACATCACCTATAACGACGACTAG
Protein Sequence
MVVNTADPHYCADCEIQFMSFAAFTTHLGSSYKHATTNLSCRLPPSPRISAAPTNTPPLICKYSYYKIEQSNKMLVNTADPHYCADCEIQFMSFAAFTTHLGSSYKYATTNLSIKPSRRSKTEEPRARGRPRRGACSEIVNNGLTTSSTCEVCGKFLSNDVQARKHYESEHPDTEYLKRYMCDVCGHTTRQYANLIVHMRTHTNEKPYGCPHCDRRFNMPSNRDRHLVVHTGEKRYQCQHCNRRFTQSSAVKLHIQTVHLKIPYAPWNKKNRKRRKVHTGEKRYQCQHCNRRFTQSSAVKLHIQTVHLKIPYAPWNKKNRKRRKVHTGEKRYQCQHCNRRFTQSSAVKLHIQTVHLKIPYAPWNKKNRKRRKVHTGEKRYQCQHCNRRFTQSSAVKLHIQTVHLKIPYAPWNKKNRKRRKVHTGEKRYQCQHCNRRFTQSSAVKLHIQTVHLKIPYAPWNKKNRKRRKVHTGEKRYQCQHCNRRFTQSSAVKLHIQTVHLKIPYAPWNKKNRKRRKVHTGEKRYQCQHCNRRFTQSSAVKLHIQTVHLKIPYAPWNKKNRKRRKVHTGEKRYQCQHCNRRFTQSSAVKLHIQTVHLKIPYAPWNKKNRKRRKVHTGEKRYQCQHCNRRFTQSSAVKLHIQTVHLKIPYAPWNKKNRKRRKVHTGEKRYQCQHCNRRFTQSSAVKLHIQTVHLKIPYAPWNKKNRKRRKVHTGEKRYQCQHCNRRFTQSSAVKLHIQTVHLKIPYAPWNKKNRKRRKVHTGEKRYQCQHCNRRFTQSSAVKLHIQTVHLKIPYAPWNKKNRKRRKVHTGEKRYQCQHCNRRFTQSSAVKLHIQTVHLKIPYAPWNKKNRKRRKVHTGEKRYQCQHCNRRFTQSSAVKLHIQTVHLKIPYAPWNKKNRKRRKVHTGEKRYQCQHCNRRFTQSSAVKLHIQTVHLKIPYAPWNKKNRKRRKVHTGEKRYQCQHCNRRFTQSSAVKLHIQTVHLKIPYAPWNKKNRKRRKVHTGEKRYQCQHCNRRFTQSSAVKLHIQTVHLKIPYAPWNKKNRKRRKVHTGEKRYQCQHCNRRFTQSSAVKLHIQTVHLKIPYAPWNKKNRKRRKVHTGEKRYQCQHCNRRFTQSSAVKLHIQTVHLKIPYAPWNKKNRKRRKVHTGEKRYQCQHCNRRFTQSSAVKLHIQTVHLKIPYAPWNKKNRKRRKELETAGMSTPLILPPPNKLAAYDAPADYLNAYITYNDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-