Basic Information

Transcription Factor Domain

TF Family: GTF2I
Domain: GTF2I domain
PFAM: PF02946
TF Group: Other Alpha-Helix Group
Description: This region of sequence similarity is found up to six times in a variety of proteins including GTF2I. It has been suggested that this may be a DNA binding domain [2, 1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.0078 2.9e+02 2.9 0.0 23 49 2 28 1 43 0.93

2 6 0.0022 84 4.6 0.0 20 49 48 77 38 81 0.92

3 6 0.006 2.3e+02 3.3 0.0 16 49 85 122 80 125 0.71

4 6 0.0029 1.1e+02 4.3 0.0 16 50 130 168 123 176 0.71

5 6 0.1 3.9e+03 -0.7 0.0 22 49 179 206 173 209 0.84

6 6 0.0049 1.9e+02 3.5 0.0 16 49 214 251 206 254 0.71

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.0078	2.9e+02	2.9	23	49	2	28	1	43	0.93
2	6	0.0022	84	4.6	20	49	48	77	38	81	0.92
3	6	0.006	2.3e+02	3.3	16	49	85	122	80	125	0.71
4	6	0.0029	1.1e+02	4.3	16	50	130	168	123	176	0.71
5	6	0.1	3.9e+03	-0.7	22	49	179	206	173	209	0.84
6	6	0.0049	1.9e+02	3.5	16	49	214	251	206	254	0.71

Coding Sequence: ATGCTGCCCGTGCCGCTGTCCAGTATAAAGGAGGAGGACGTCAAGATCGACGTCACCAGCGTGCCGAGCGAACTGCCCATCAGAGTGTTTAGTGTAACTAGGACTGTCCTAGGACTGGACAGGATAGTGGACGTGGCTATAGACGACATGCTGCCCGTGCCGCTGTCCAGTATAAAGGAGGAGGACGTCAAGATCGACGTCACCAGCGTGCCGAGCGAACTGCCCATCAGAGTGTTTAGTGTAACTAGGACTGTCCTAGGACTGGACAGGATAGTGGACGTGCCGATAGACGACATGCTGTCCAGTATAAAGGAGGAAGACGTCAAGATCGACGTCACCAGCGTGCCGAGCGAACTGCCCATCAGAGTGTTTAGTGTAACTAGGACTGTCCTAGGACTGGACAGGATAGTGGACGTGCCGATAGACGACATGCTGTCTAGTATAAAGGAGGAAGACGTCAAGATCGACGTCACCAGCGTGCCGAGCGAACTGCCCATCAGAGTGTTTAGTGTAATGGACGTGCCGATAGACAACATGTTGCCCGGGCCGCTGTCCAGTATAAAGGAGGAGGACGTCAAGATCGACGTCACCAGCGTGCCGAGCGAACTGCCCATCAGAGTGTTTAGTGTAACTAGGACTGTCCTAGGACTGGACAGGATAGTGGACGTGCCGATAGACGACATGCTGTCCAGTATAAAGGAGGAAGACGTCAAGATCGACGTCACCAGCGTGCCGAGCGAACTGCCCATCAGAGTGTTTAGTGTAAGTTGTACTATATTAAGTACCTAG
Protein Sequence: MLPVPLSSIKEEDVKIDVTSVPSELPIRVFSVTRTVLGLDRIVDVAIDDMLPVPLSSIKEEDVKIDVTSVPSELPIRVFSVTRTVLGLDRIVDVPIDDMLSSIKEEDVKIDVTSVPSELPIRVFSVTRTVLGLDRIVDVPIDDMLSSIKEEDVKIDVTSVPSELPIRVFSVMDVPIDNMLPGPLSSIKEEDVKIDVTSVPSELPIRVFSVTRTVLGLDRIVDVPIDDMLSSIKEEDVKIDVTSVPSELPIRVFSVSCTILST

Sequence clustering based on sequence similarity using MMseqs2