Msep009822.1
Basic Information
- Insect
- Mythimna separata
- Gene Symbol
- -
- Assembly
- GCA_030763345.1
- Location
- CM061174.1:17941538-17942605[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.5e-07 0.00014 22.5 0.1 13 41 27 54 20 56 0.88 2 2 5.6 5.3e+03 -1.7 0.1 7 21 145 160 144 160 0.75
Sequence Information
- Coding Sequence
- atGCCGAGAAAACGTGTCAAAGTATCTGCAAAAGGACAGAGTAGCATATCACAGTACATGGAAGCGTATGACGAATTACGAACAGGCATGTCACTTCGAACAGCAGccgaaaaatacaatattaattatgtgTCCCTGCTTCGATATAAAAGAAAACGCGAGGCTAACAATGATGAAAGCGGTGAGTCTACATCAATGGGCTACATAGCACACAACAGAGTTTTCACAGATCCTATGGAGAAAAGCTTGTCAAAATATCTCATGCGATGTGCCGATATTTATTTTGGCCTATCTCCTAAAGAAGTGAGAAAATTGGGTTATGAGTTGGCtgttaaatacaatttaaaaaggcCGAGTACCTGGGATGCAAATGAAATGGCAGGAGAGGATTGGTTTACAGCATTCATGCATAGAAATCCAGAACTTTCCATAAGAGCTGCTCAAGCCACTAGCATGTCCGGGGCAACAAGCTTCAATAGAGTGAACGTGGACGCGTTCTATGATAACCTACAGCAAGTTATGGACAAGAATAACTTCGAGCCCCAAGATATTTATAATGTCGACGAAACGGCTGTTACCACCGTTCAAAAACCAGATAAAGTGGTGACTAGACGTGACCCTTTAGTGGGTGATTCCCATGATGTTGACGTCTCAAACCCCCTTATCCAAACCATCCGCCACATTCCCATGGTACCAGAGCCATTCTTTCGGTTAGTTAATTGTATTGGCGTTCTCAAGCACCAGGGCGATGTTTATCTTCCAGTGCTCCCGAAAGAGCTTCATGTGCGAGGCGCCTTTACTCCACGCAGTCATACGGTTTTATTGTCAAACCTAAGGCGAACCGTTGAAACTTTAAGTAATCCTAGAACATCACGATTAGTCCGTGAGGAATTTTATCATCACTCACCAATACCAGGAGCGAGATGGGAAGGTCGTCGCTTGATGAACCCAGACGCTATCATTCCACCGGATTATGACAACGTAGCCTTTAAAAGAAACCACGACCATCTTAACGATTTGGCAATTTACTTAGAGCGTAACCGCGTTCTGGAGCCAAACGGAAGTTGA
- Protein Sequence
- MPRKRVKVSAKGQSSISQYMEAYDELRTGMSLRTAAEKYNINYVSLLRYKRKREANNDESGESTSMGYIAHNRVFTDPMEKSLSKYLMRCADIYFGLSPKEVRKLGYELAVKYNLKRPSTWDANEMAGEDWFTAFMHRNPELSIRAAQATSMSGATSFNRVNVDAFYDNLQQVMDKNNFEPQDIYNVDETAVTTVQKPDKVVTRRDPLVGDSHDVDVSNPLIQTIRHIPMVPEPFFRLVNCIGVLKHQGDVYLPVLPKELHVRGAFTPRSHTVLLSNLRRTVETLSNPRTSRLVREEFYHHSPIPGARWEGRRLMNPDAIIPPDYDNVAFKRNHDHLNDLAIYLERNRVLEPNGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -