Msep025605.1
Basic Information
- Insect
- Mythimna separata
- Gene Symbol
- clz9
- Assembly
- GCA_030763345.1
- Location
- CM061190.1:1484148-1487030[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.3e-09 2.1e-06 28.3 0.1 2 45 16 60 15 60 0.94
Sequence Information
- Coding Sequence
- ATGCCTCGAAATTACATTCGGAAAACTAATAAAGCTGCTTACTCTGATGAAAAACTGCAAAATGCAATACTAGCAGTCAAAAATAGAACTATGTCTGCGTACACTGCTTCGAAACATTACAACATTCCAAGATCGACTATAGTTAACCGCATTTATGAACGCAGAGGTTTTAAATCCAATACCTTGGGCAGGAGTACGGTTTTATCAAATGAAGTAGAAAAGTCGTTGGCTAAAAATATCCACATTATGGAAAAATATGGGTTTGGACTAACTAGGAAAGAACTTCTGGAAGTAGTTGGTGAATATGTGAATAAAAATTGTGTTGCCAACCCTTTCAATAACGGAATGCCAGGCGAAGATTGGTTTCTGGGGTTCAAGAAAAGGCATGGACTATCGGTCAAAAAACCACAGCCTGTAGAATATGCCAGAAAAAATGCGTGTAGACCTGATGTTATATATCCATACTTTGACTTACTAGAGGAAACTATTAACGAATTAAATTTACAGAATAAACCTGCTCATATATATAACTTGGACGAAACAAGTTTCAGTAAGGATCCTAGTAAGTCAAAGGTGGTGGGTCTCAAGGGCTTCACGTCCACACGTACAATTTCATCACCCGGGAAGGACAACACGACCGTCTTGTTAGGTTGTAACGCGCAAGGTGAAAAACTTCCTCCCCTTATCATATACAAGGGAAAAAATGTCTGGGACGAGTGGACGTCTCAGGAAGCATACCCGGGAACCGTATATGCGGCAACTTCTAACGGTTGGATGGAATCCACAgtatttgaaaatttttttgATAAAGTTTTTCTACCAACCGTTGGCGACAAACGGccgattttattaatatacgaCGGCCATAGTACGCACGTGGGCTTAAACATAATAGAGAAAGCTCGTGCAGCTGGAATAACCATACTTAAAATCCCACCGCATACTAGCGATGTTCTCCAACCACTGGATCTGTCTGTTAATAAATCCTTTAAGGATAAATGGGACGCTCTCTTGGTGAAATGGCAAAGACAAAATATAGGGAAAGTCTTACCAAAAAAGGATTTCTCTAAGATGATTGGTCAAATATGGGCTGCATTAGAACCCAGTGTATGCTCGGCAGGATTTAGGAAAGCAGGTATTTATCCACTTAACAAAAATGCAGTACCACCAGAGAAATTCAATCAGGTTCTGTTACGGGCTTGGAAATCAACAACAAAGACGTCTGAGGAACCTGACGAAATTGTTGACTCGGCATTTTCTAGAGAAGAATATCGAGCGTACACAGCAACTCACGAAACATGTCCTGATATATGTCATAATGACAATGACGTAAACCTGGTCCTCCAGCAACCAAATGAATTTTGTGAACATACTGCTAACCAACCTgaactcttaaaaaaaatagtactgGTTAGCATCAATAAAGTGATATCTGGTACAGATGTTGGCGCATTACAGCCAAGTTACAATATTCATGAATCGTCGATACTTCAACCAACTGAAACACGAAGTGCATTACAGGAAAATTTTGCAGTTGGTAGCAAGTGGAATTTGAGCGAACCGTCAACCTCGACTTTTCACCGAAATTTAATCGAACATAACATTAAGTCGGTAGCTCAAAGACAAGATCACCTTAAAAATAACCACTTCTTGGAGAACGAACAAACGAGTATAGAATCATTTGTGGTAAATAATGAGCTTCATTTCTCATTAGAAAATTGTGTACCAATTTCTAGGCATCATGATATATCTTTGATAAACAAACAAGGGATTGCACCAACCACAAGTTTACATACAACTTGTAGTGATACACGTAATTCAAGAGTCCAAATTCTTGATGACAGCATAGTGACATGTGAAGTTTCATTTGAAGATCTGCTTCTGAAATCTGTTAAAGGAGGGACTGTAAACAGAAGAAAAAAGGTTAAGATAGCTACAGGTGCCGAATTAATTACACACGACGAAGTATACAATAGATGTAAAATCATAGAAGCTGAAAAAGAGCAAAAAACAAGGATAAAGGAACAAAAAGcgaaagaaaaggaagaaaaaagaaaaaccaatgAACAGTTAAAGAAATCCAAGGAAGACAAGAacaatattactaaaataaaaaattcaaaaaaacttgtaaagaaaaatgtcaaaaaggtACGGAAAATATCTACATCCAGTGACAGCGAAGTAGAAATCAATCTGGATGATGAAAGTGATGCTGATTATGGAGAATATTGTAAGGACCTTTTAGATGATATAGAAAATGAAGACTTAACCTTAGATAAAATTATTGAGGCTGAAAAAGAGCAAAAAGTAAGGATGAAGGAACAAAAAGcaaaagaaaaggaaaagaaaagacaagccaatgaaaaattaaagaaatctaACAAAGACAAGAACAATGTTTCTAATATTATTGGAAATGCTAAAAAACTTATAAAGAAAACTGACAAAAAGGTACGGAAACTATCCACATCCAGTGAGAGCGAAATAGAAATCAATCTGAATGATGAAAGTGATGTAGATTATGGAGAATATCCTCCGGACCTTTTCGATGATAaagaaaatgataatgataaacaaaataaagacctaaccctagataatggggattgggttttagtaaaattttgTACGAAAAAATCAGTGAAGCACTTTGTTGGCGTAGTACTGCATAGGAACGGTAACGGTTATCCAGTAATAAAATATGTGAGAAAAACGGTGTCAATTATAGATGGCCAAACAGTGTTTACTTTCCCAACCATTGATGACATATCAGAAATTCGTCATACAGAAGATATTGTTGAAAAACTTCCTAAGCCCATTATAGGACGAAGAGGACAAAtcatatttaaaatgttattcaAAACCTATAATATTCAATAA
- Protein Sequence
- MPRNYIRKTNKAAYSDEKLQNAILAVKNRTMSAYTASKHYNIPRSTIVNRIYERRGFKSNTLGRSTVLSNEVEKSLAKNIHIMEKYGFGLTRKELLEVVGEYVNKNCVANPFNNGMPGEDWFLGFKKRHGLSVKKPQPVEYARKNACRPDVIYPYFDLLEETINELNLQNKPAHIYNLDETSFSKDPSKSKVVGLKGFTSTRTISSPGKDNTTVLLGCNAQGEKLPPLIIYKGKNVWDEWTSQEAYPGTVYAATSNGWMESTVFENFFDKVFLPTVGDKRPILLIYDGHSTHVGLNIIEKARAAGITILKIPPHTSDVLQPLDLSVNKSFKDKWDALLVKWQRQNIGKVLPKKDFSKMIGQIWAALEPSVCSAGFRKAGIYPLNKNAVPPEKFNQVLLRAWKSTTKTSEEPDEIVDSAFSREEYRAYTATHETCPDICHNDNDVNLVLQQPNEFCEHTANQPELLKKIVLVSINKVISGTDVGALQPSYNIHESSILQPTETRSALQENFAVGSKWNLSEPSTSTFHRNLIEHNIKSVAQRQDHLKNNHFLENEQTSIESFVVNNELHFSLENCVPISRHHDISLINKQGIAPTTSLHTTCSDTRNSRVQILDDSIVTCEVSFEDLLLKSVKGGTVNRRKKVKIATGAELITHDEVYNRCKIIEAEKEQKTRIKEQKAKEKEEKRKTNEQLKKSKEDKNNITKIKNSKKLVKKNVKKVRKISTSSDSEVEINLDDESDADYGEYCKDLLDDIENEDLTLDKIIEAEKEQKVRMKEQKAKEKEKKRQANEKLKKSNKDKNNVSNIIGNAKKLIKKTDKKVRKLSTSSESEIEINLNDESDVDYGEYPPDLFDDKENDNDKQNKDLTLDNGDWVLVKFCTKKSVKHFVGVVLHRNGNGYPVIKYVRKTVSIIDGQTVFTFPTIDDISEIRHTEDIVEKLPKPIIGRRGQIIFKMLFKTYNIQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01030143; iTF_01030144; iTF_01093965; iTF_01093964; iTF_01026008; iTF_01026006; iTF_00172737; iTF_00172738; iTF_00172739; iTF_00172740; iTF_00172772; iTF_00172741; iTF_00172734; iTF_00172735; iTF_00172736; iTF_01221464;
- 90% Identity
- iTF_01026008;
- 80% Identity
- iTF_01030143; iTF_01030144;