Mpal029588.1
Basic Information
- Insect
- Mythimna pallens
- Gene Symbol
- ZNF131
- Assembly
- GCA_961205895.1
- Location
- OY540851.1:6849675-6873943[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 1.8 1.9e+02 3.8 0.2 1 23 218 241 218 241 0.89 2 9 0.003 0.3 12.6 1.4 1 23 347 370 347 370 0.96 3 9 6.2e-05 0.0064 17.8 3.2 2 23 375 396 374 396 0.97 4 9 0.088 9 7.9 1.4 2 23 404 424 404 424 0.97 5 9 2.9e-05 0.003 18.9 1.3 1 21 430 450 430 455 0.94 6 9 0.00089 0.091 14.2 0.3 1 23 463 486 463 486 0.94 7 9 9.5e-05 0.0097 17.3 0.2 1 23 492 515 492 515 0.97 8 9 5.3e-06 0.00054 21.2 0.5 1 23 525 547 525 547 0.94 9 9 4.3e-05 0.0044 18.4 1.4 2 23 554 576 553 576 0.96
Sequence Information
- Coding Sequence
- ATGCCAGAGATGGACCAGCTAATTTGCTGGGAGTGTCTTGCTTTGATGAAGAGGTTCCACAAGTTCAAATGGCAGGTGCACAGTGCTCAGGAGCACCTGAGGGTCTTGGCACTCAGCAGGACACAGGAGAGCATGGATCACACATACATGTCTCAATCACTCTCCAGCCTAGAAATGGGAACTAAAACGGAATACGACAAGATCTATTTTGATTTTTCCTCTGCCTCCGAGGAGCAGGAGTACATCATCACCAGTCACCCTCAAAACGTGAAGAGTGAGCACTATGATGTGGCTCAAGTCGTGAGGGAACAGGGGAATAATCTACTGGATATTGATGATCATATCTTAGAAGTACCAGAAATAGTACTGGAGAACCCAGTAACTGGTGTGATGTCTCATATCGTGGTCGGGACGGATGCTCTGGTCTCTACAGATCCAATCACGCATACTGTTGAGGGGGGCATGCCGCATTTAACTATAGGGCCACTAACATCTTCGAAAATCGAGACAGTCATTATGTGTCAGAGCACGCAGCCTAAACTAGAAAAGCCAGCCTCAAAATTAGGATATAATGTCGAGTATATGAGCGAAACTGATATGCTAGCTTCCAGAGAGGAAGCTAAACAGAAGATCCAGTACGCGAGCTCTGTATATAAGTGTGAATTGTGCATCATTGGATTCTACACGCAACAACAGGTCGAAGACCATTTCGTTTCTTTACACCGAGCGAAACCCGGTCAAGTTGCCTGCAAAGTATGCTATATCTATATAGATGAGAGCAAGCTTCCAGCTCACACGGAATCTCACTACGTCCGGTACAATTGCAAACTGTGCACCCACAGTGAGATGAGCAACAAACTGATCAGACAACATGTGTCTTTGCACATGAACAAACAGACGAGCAACGCGAGCATTAAGATTGGTGACGTGCGGACTAACAAGGgcagaaaaaagaaagataaacagAAGGAAGCCAACATTACTCCTCCAAAGCCCGGTGATCTTCGTAAGCTGTTGTCCAAGACCTCTATTGAAGTCTACCAGTGCTTGGAATGTGATATGTTCTTCAAAAACTCCCGCGCACGTAAGAACCACGTGGCTCGCTTCCACAGGGAGGGCCTACAATGTGACCACTGCAAAAAACGATTTGTTAACAGGACTACTTTGGCAACACATCTCAAACTCCACGAAGGTCCCCTACCCCGAGCCGAGTGCTCGATCTGCCACAAAATGGTCCGCGTCATACAGCTCAAGTACCACATACAGCGACATCAGAACAAGAGCCGTTACGAGTGCGAGGAGTGCAACAAGACGTTCAGCCACCTCGCCACTTACCAGGCGCATCTCAAGTACTCGCGGGCGCATGCGTCTGAACAGGTCTTTAAattccCATGTCCGATGTGCAATAAAGGTTACCCCACCAAGGAAGCGATGCAGGATCACTTCAATTATCAACATCTCGGCAAAACTGTGCACAAGTGTCCTATTTGCGAGAAGcCTATAGCTTCAAGAGCGAATGTAGAGAAACATATGATGCGAGTCCACGGTCAGAAGAAGGAGAAACCGAGGAATCACGTGTGTCAGGAATGTGGAAAGGCTTTTACTGACAAAAAAGCGCTGACCCAGCACGAAGTGATCCACTCGGGCGACCGTCCCCTCTCCTGCGACATCTGCCAACAAACGTTCAAGCAGAAAGCGTCCCTGTACACGCACAGGAAGCGCGTGCACAAAGTGTTCCCCGCCAAACGGCTCGTCGAGTACATGGACGATACTGTACAAGATTGGAAAGTTGAAAAAAGGTTCATTGTCTGA
- Protein Sequence
- MPEMDQLICWECLALMKRFHKFKWQVHSAQEHLRVLALSRTQESMDHTYMSQSLSSLEMGTKTEYDKIYFDFSSASEEQEYIITSHPQNVKSEHYDVAQVVREQGNNLLDIDDHILEVPEIVLENPVTGVMSHIVVGTDALVSTDPITHTVEGGMPHLTIGPLTSSKIETVIMCQSTQPKLEKPASKLGYNVEYMSETDMLASREEAKQKIQYASSVYKCELCIIGFYTQQQVEDHFVSLHRAKPGQVACKVCYIYIDESKLPAHTESHYVRYNCKLCTHSEMSNKLIRQHVSLHMNKQTSNASIKIGDVRTNKGRKKKDKQKEANITPPKPGDLRKLLSKTSIEVYQCLECDMFFKNSRARKNHVARFHREGLQCDHCKKRFVNRTTLATHLKLHEGPLPRAECSICHKMVRVIQLKYHIQRHQNKSRYECEECNKTFSHLATYQAHLKYSRAHASEQVFKFPCPMCNKGYPTKEAMQDHFNYQHLGKTVHKCPICEKPIASRANVEKHMMRVHGQKKEKPRNHVCQECGKAFTDKKALTQHEVIHSGDRPLSCDICQQTFKQKASLYTHRKRVHKVFPAKRLVEYMDDTVQDWKVEKRFIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00039201;
- 90% Identity
- iTF_00124626;
- 80% Identity
- -