Mpal029564.1
Basic Information
- Insect
- Mythimna pallens
- Gene Symbol
- salm_1
- Assembly
- GCA_961205895.1
- Location
- OY540851.1:6367801-6406825[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00036 0.037 15.4 0.6 1 23 475 497 475 497 0.98 2 11 0.013 1.3 10.6 7.1 1 23 504 526 504 526 0.94 3 11 0.1 10 7.8 0.9 1 23 530 552 530 552 0.97 4 11 9.1e-06 0.00093 20.5 1.0 1 23 557 580 557 580 0.98 5 11 0.0054 0.55 11.8 0.3 1 23 584 607 584 607 0.93 6 11 2.9 3e+02 3.1 0.4 3 21 621 639 620 644 0.91 7 11 0.19 20 6.9 0.2 2 23 685 707 684 707 0.96 8 11 0.0067 0.69 11.4 3.7 2 23 723 744 722 744 0.94 9 11 1.3e-05 0.0013 20.0 2.6 2 23 751 772 750 772 0.96 10 11 7.9e-07 8.1e-05 23.8 1.8 1 23 779 801 779 801 0.99 11 11 1.4e-05 0.0015 19.8 0.1 1 23 807 830 807 830 0.97
Sequence Information
- Coding Sequence
- ATGAAATTGGTCTTCATTCGTCAGGAATACGACAAAAAGGAGAGCATACGCCATCGCGTTTGTTGGGAGTGTGCTGCACGGCTCACATCGGCTGCTGCGTTCAGGAACAAAGCGCTGCTCTGCGATGCATTGCTGAAAAATATAGCACACATGAACAAAAGCGACATCGCAAAATTGAAACACAAGTATCGTAGCTTTCTCAAATCACCCCTCATCAATCGAACTGTATTCACTTCATCTGATATTGGATGCGAAGATATCAGACCTGATCACAAAGAAATGGAAATTCTCACTGATGAAACACAGTTCGGGGACGACGAATCCTTAGCGAATATACCTATGGAAACTGACGTTGGATCTAGTCCTATAGCAGAAAATAATACCAATTTTCAAACCAAACATTtgaaaaggaaaatatttccaGGATTCGTACATTTCGATGATAGTATGTCGTCTCACAGTAAAAATGCAAAAGAAAACAGTGAtgtatataataacaataatgttcTAAATGATGTCACTGTAATGACTAAGGCACCTCTATCAGAAAATAAATCCAATATTCAAATCATACATATGAATAGTGAAATATTTTCAGCACCCACAGACACAACAGAAAACAGTGAagtatattatagtaataatGATAAAGTTTTATGTGAAGATGACGTAATGACTAACGCACCAATAAATGACGATTGCTATGTAGTTATAGTAGTAAGGGATGACGAAAATAGCCCAAAGTTAGATGTGGTCGGTGATACTGTAAATGAGTCCATATGTGAAGAAGATACACAGAGTCTAGAAGTAGCATCTGCCAATAATGCTAAGAAGATGACGATCAGGAAGGTTGAAGCTTCGTGTGAACAAGAAAATGGGCTCAATGTCGGGGAGAAACAGAAAATTATTACGTTAAAGGAAAAATGTTTCTCGTTGGCagaaatatctgaagaaactgGGAAATCGGACAAATCTCCACAGACTTGCAATGTTGACATCAAAGACGACTACGGAGTATTCCTCACAGAAGACATCACGGATAAGGACGATGACGGACTTAATGACCCCGGAATTAACGACCCCGGAATTAACGACGCCGGATTTTACGACCCCGGATTTTACGACGGCGAAATTGCAGATACGGTTGTTTTAAACGACATAGATGATCCGtatgaagaagaaaacgtgttgtgtGATAAAGAAAATTATTCCTCAGACGATAGTACTCCTTTAGAAAACTGTAAGGCGaacaaaattcgaacaatgaaAGAGAAGGCAGACAAAACCgctaaaagaatgaaaaaagtaaaagtaaacgATGAATTGATAGAACCTTTTTTTACGATAACGGATTTGACGTTGGAAGAACAGATGGCCGAGATCGCGGCAAGGCAGAAGAGTTCGAATTATAAGAATTCTCTTTTTAAGTGTTCCATGTGTTTTAAGGGATTTGTGGATGAAAATGCTTACAATATTCATATGTTGAGGCATACTGACcacAACGGCGAACACGAATGTAAGATCTGCAAGATGCGCTTCAAAAACCCGCATTGGCTCCATAAACACACGTTTTTACACTCAGAAAGCTACAGCTGCAATCAGTGCACCTACGTCACTAAGAATCGGCAGACGGCGACGCTACACGCACGCTGGCACATGGGGATCAAGTACAGATGTCCGCATTGTCCGGAAGAGTTCGATCAATGGTCAACTTACATGAGCCACCTCCGCATCAAGCACCCGTCAGACTTCGCATGCGAGATTTGCGGCTACTCCTTCGTCAGCGCGAAAGGCCGAGAGCAACATAAGAATCTGAAGCATCCATTTGAGAATGTACAGATACCAGAAGACGGTCCATTATGCGAGCTGTGTAACGTGAAGTTCGTCTCATCAGAGGCGCACCAACGTCATCTCAGTGTTTCGGCTAAACATAACACAGACAACGACTCGAGGGAACCGAACCAGCCCAAGAGACCGCAAATCAAGAAAGTTAATAGTGACGAAAGGAGACGACGAAGAGCGAAATACAGGCAGAAGGTGGTGGGACCGATACCTTGTGAACAGTGTGGCGTCGAATTAAAAGGCTCCTCGGCGTACCACGCTCACTTCAGACGCATGCACCCCGACAAGAACAGAACCAACTTCCCCGCCATGAAGTATCCCTGCATGTGTGAAGTATGCGGGAGAATGTTCCAAAGTACCACTCATCTAAAAGACCACACCTTGTTACACATGGGCGGGACTGCCTTGAATTGTGAGACGTGCGGCAAGGCGTTCAGAACGAAGCATTATCTGATGATGCACCAGCGCCTGCACAGCCCGATGCGCCCCAGCTACGAGTGCACGCTCTGCGGGAAGAGCTTCTCTAACTACAGCAACAGGCAGCGGCATCTTTTGACCCACACCGGCGTAAGACCCTTCAAATGCGACATATGTGGCAAAGGTTTCAAGGTTCCTGGTGAGATGCGAACACACATAAATTATGTGCATCTGAAGAAACCCTGGCCGAAACGAAATAGAGATAAGCGGGGATCGGAGACGAGTgagGTAGAAGAAGATACAGACAATTATATGGAATATAAAATCATGTATTTGCAAGAAAAACGAAATTGTACGTTAAGATTAAAGAAAGGGATTGTTCCACACAAATTCCAATGTCGAAAGGAAACTAAATCACAGCCAGCATCGAGGAAAAAAGGTTCTTTGAAACGAAAACCTTTAGAAGCAATAGAAGACGTTCCAACTGCGCCCCCTGCTAAACTAAGTGTGTGCCGAGGATGTCTAGCTTTGGATGTCAAAATGTTCGATATGAAGGACTTCCAATTGACAGAGATGTTCCAGAATGTCACGGGAATATCGGTAAACGACAATACGGAGATCATACACCATCGCGTTTGTTGGGAGTGCGCTGCACGGCTGACAGCGGCTGCAACTTTTAGAGACAAAGCGCTGCTCAGCGATGCATTGCTGAAAGATATAGCACACATGAAAAAAAGCGACATcgcatcattaaaaaaaaattatagcatGCTAAAATCGCGTCTCACCGTCTTTACTCCACTTACTTCCTCTGAAATTAAATGCGAAGAAACGAACAAAGAAACAGTTTCTAATGACGAGGCAGtttcaaaagaaattaaaactgaaataatgaATCAAGAAGATATAGAATTTGAGGAACATGAGCCGTGGATAGATGTACCTGTTAAATTAGAAATGGTATCTAATACTGTAGCGGAAGATAACATCAAAGGCGATGCATTTAAAATACTGACCCATGATTGTACATCTAAAGAAGACATTGGAAGTGACAAAACCAACATAGCAACATTAGAAAAAAATCACAGCATTCTATCATCACGGCAAACCGATCCTACAGCGCttacatgcaaaaaaaatataattgaaaacaGAGATAAAGAAACGGCATCTAATAACCAAAAGGCATTAAAAGAAACGATAATTAAACAAGAACGAAAAGAGACAGATTTTGAAGAAAACGAACCATGGGAAGATATTTCAgttaaaatagaaatagaatcTGATACTACAGCGAAAAATAGCACCAAAAACGAGGCATTTACAAAACTAACCCGTTTGAACAATGATTCTACTTCTAAAGAAGACAGTGGAGGTGATATAAGAAGTAGTGAACCGCAAGATTACTTTGAAGAAGATGCCAAAATGAGTTACGATCCGGTTATAAATGATGATAGTAAAGCGAACGTAAATATCACTGTTGTAGATGATACAGAGATAAAATCAAAGCTTAATATCATTAGTATTACTGAGGATGAGATCTCAAGCGAAGAAGATACAGTGTTTAGCTGA
- Protein Sequence
- MKLVFIRQEYDKKESIRHRVCWECAARLTSAAAFRNKALLCDALLKNIAHMNKSDIAKLKHKYRSFLKSPLINRTVFTSSDIGCEDIRPDHKEMEILTDETQFGDDESLANIPMETDVGSSPIAENNTNFQTKHLKRKIFPGFVHFDDSMSSHSKNAKENSDVYNNNNVLNDVTVMTKAPLSENKSNIQIIHMNSEIFSAPTDTTENSEVYYSNNDKVLCEDDVMTNAPINDDCYVVIVVRDDENSPKLDVVGDTVNESICEEDTQSLEVASANNAKKMTIRKVEASCEQENGLNVGEKQKIITLKEKCFSLAEISEETGKSDKSPQTCNVDIKDDYGVFLTEDITDKDDDGLNDPGINDPGINDAGFYDPGFYDGEIADTVVLNDIDDPYEEENVLCDKENYSSDDSTPLENCKANKIRTMKEKADKTAKRMKKVKVNDELIEPFFTITDLTLEEQMAEIAARQKSSNYKNSLFKCSMCFKGFVDENAYNIHMLRHTDHNGEHECKICKMRFKNPHWLHKHTFLHSESYSCNQCTYVTKNRQTATLHARWHMGIKYRCPHCPEEFDQWSTYMSHLRIKHPSDFACEICGYSFVSAKGREQHKNLKHPFENVQIPEDGPLCELCNVKFVSSEAHQRHLSVSAKHNTDNDSREPNQPKRPQIKKVNSDERRRRRAKYRQKVVGPIPCEQCGVELKGSSAYHAHFRRMHPDKNRTNFPAMKYPCMCEVCGRMFQSTTHLKDHTLLHMGGTALNCETCGKAFRTKHYLMMHQRLHSPMRPSYECTLCGKSFSNYSNRQRHLLTHTGVRPFKCDICGKGFKVPGEMRTHINYVHLKKPWPKRNRDKRGSETSEVEEDTDNYMEYKIMYLQEKRNCTLRLKKGIVPHKFQCRKETKSQPASRKKGSLKRKPLEAIEDVPTAPPAKLSVCRGCLALDVKMFDMKDFQLTEMFQNVTGISVNDNTEIIHHRVCWECAARLTAAATFRDKALLSDALLKDIAHMKKSDIASLKKNYSMLKSRLTVFTPLTSSEIKCEETNKETVSNDEAVSKEIKTEIMNQEDIEFEEHEPWIDVPVKLEMVSNTVAEDNIKGDAFKILTHDCTSKEDIGSDKTNIATLEKNHSILSSRQTDPTALTCKKNIIENRDKETASNNQKALKETIIKQERKETDFEENEPWEDISVKIEIESDTTAKNSTKNEAFTKLTRLNNDSTSKEDSGGDIRSSEPQDYFEEDAKMSYDPVINDDSKANVNITVVDDTEIKSKLNIISITEDEISSEEDTVFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -