Mpal028038.1
Basic Information
- Insect
- Mythimna pallens
- Gene Symbol
- ZFY
- Assembly
- GCA_961205895.1
- Location
- OY540849.1:2934289-2938172[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.24 25 6.5 8.2 1 23 148 171 148 171 0.97 2 18 0.00034 0.034 15.5 2.6 1 23 180 203 180 203 0.96 3 18 0.031 3.2 9.3 0.4 2 23 216 238 216 238 0.97 4 18 0.00038 0.039 15.4 0.8 1 23 247 270 247 270 0.97 5 18 0.00031 0.031 15.7 2.9 1 23 282 305 282 306 0.96 6 18 0.00012 0.012 17.0 0.9 2 23 334 356 333 356 0.97 7 18 0.0013 0.14 13.6 1.2 2 23 366 388 365 388 0.96 8 18 0.077 7.8 8.1 1.2 3 19 394 410 392 413 0.92 9 18 0.00016 0.016 16.6 0.5 2 21 418 437 417 440 0.95 10 18 0.37 37 6.0 2.2 3 23 450 471 449 471 0.93 11 18 0.00026 0.027 15.9 3.5 1 23 476 499 476 499 0.94 12 18 3.6e-05 0.0036 18.6 2.0 2 23 511 533 510 533 0.97 13 18 0.17 17 7.0 0.4 1 23 562 585 562 585 0.92 14 18 0.51 52 5.5 0.1 2 23 592 613 591 613 0.91 15 18 0.018 1.8 10.1 1.4 2 23 619 640 618 640 0.97 16 18 4.2 4.3e+02 2.6 2.0 3 23 648 670 646 670 0.90 17 18 0.019 1.9 10.0 0.1 1 23 706 728 706 728 0.97 18 18 0.081 8.2 8.0 1.9 1 23 734 757 734 757 0.97
Sequence Information
- Coding Sequence
- ATGGATCTAGaagtaaaagttaaaatagaaaaagatgATTCAAGAAAGGACCCTACCTCATTTTTGCCTGAGGAAGCAATGTCTTATGAaattaagaagaagaaaaagaaaaaaaagaagaaacaagaaGATCCATTTAAAGATATTGATGACAAAATGAATGTCAAGATTGAACCAATAACTTTGTTGGATCCAGAGGTGAAAATAAAGGTCGAGGATATTGAAGTGGAATTAGATTTTAATGATTTTGGAGACAGCGGTCTGATGCATGAAGGTCCACATGATGCTGATGAAGAACCAGTCGTGAAGATAGAGCCACAGAACCACGATGCCGTCCTTCTCACCTTCGAGAGCGTCATCAGCGAAAAACCACCTATGGCAAACAGCACAGAAATGTTCCCGTTTTCCAACAATGACCTGCCCACTGAACAAGCCCCAAACCACGTCTGTAAAGTCTGCCATCTAGTCTTTCAATCCCATAAAACAATGCGAATGcatcaaaaaagaaaacacaagtCGTTCAGAAAATCCTTCAAACACATTTGTGATCACTGCGGCATGTCCTACGAAATGAAGAACAGTTTAGTAGCTCACATGAAAAGGAAACATGGACCTGATTCCAAACCAGACGATAGAGAAGAACGGACTTGCGAAATATGTGCTCTAGTCTTCAAAGGAATGCCTCGGCTGCGCATGCACATGAGAAGAAAACACGGATCGTTCCAGGATTCTTTCAAGCACGTTTGCGAAGACTGTGGCTTAACTTATGAAAAGTACAGAAGTTTAATCGTCCATATACAACGTAAACATTCGAATAATcagaaacctgaaataaatCGATGGTACAACTGCCCTTTctgtccaaaaatatttactaaaagaGAAACTTACGCCAGGCATGTGCAGAGAAAGCATCACGTTTcagatgaaaatattaaacaagaAAATGATAATGAAAATGATTTGGTGAACTGTAAAAATGAACAAACTGGTGAGATTACTTGTAAAGAATGCCCTCTAGTCTTTTCATCTATGAATTTCTTAAAACTTCACATGAGAAGGAAGCATAATGCGTTGAGAGATAACTTCAGATTGAAGTGCAGAATTTGTAACTTGTCTTACGATAAAATTGAGAGTTTGAAGAGGCATGTGAGAAGAAAACACGATAAAGGATCACATTGTGAAGTTTGTAATAAACAGTTTGATACACGAGAGATGTATCTCAATCATTCTCACGTGAAAGCAATAAAAGAGTGCAATATTTGTGGCCTGATTTTCGCGTCACAAGGCGGCTTAGCGAAACACATGCGCTGCACACACAAAATAGACTCACCTAAAACAGTATTCTGCAATTTATGCAACGAAGGTTTCCACGATAAACGGCAGCTGAAACCGCATTTTATGAAAGTGCATTTAAAAGTATCTTACACTTGTAGATACTGCAAAAAAGTGTTTAAAGCAAAAGAGAGTTATCGACGGCACATATTATTTAAACACCCTAATGGGAACCATTTTAACGTTCAGAGGCAAAAGTGTGAACAATGTAATGAGACTTTCAAAGACGAATTTGATCTCTGTCGTCATATAAATATGATTCATGGACGTTCAGAAGATATGAAGAAAGAGGACAGagaaattttagaaataaaaagagaagATCATGATCAGGACGTTAAGGACTGTTTTCAGTGCACCAAGTGCCCTGATACGTACTTAACTTGGGAACAATTAAAGCTACATTATGAAGCAACACATCATAATATAGAAGAAACACAGTGTCAAATATGTGGAGAGATACTCCCAGGAAATGAATTACAGAAGCATATAAAGAGTCGTCATACAGATACTGAAATGCAGTGTAAATACTGTGAATTCAAGACGAATATTAGAGTTAGTTTGACACAACACATGTTAAGGCATAAAAATGCTGAAACAATTCACTGTGAATACACAGGATGCAAGTACAAGACGTTTTACGAAGGTGCTATGGAAAAACATAAGAGAAAACATGCCGATCTAGGAGTCAAACTCCAATGTACACAGTGCCCATTCCAGTCTATGAACAAATACATATTGAAATATCACGAGGAAGCTCACGAAACCGGTAAAAAACGATACATGTGTGATCAATGTGATTATGCAACGATTTTACCAGCAAATCTCGTTCAGCATAAATATAAGCATTCAACGGAAAAGAGATTCAAATGTGAAGTGTGTCCATTCGCAACGAAATATAATACATCACTTAGATTCCATGTTAGGAAAAAACACTGTGATCTACCGACATTcagttaa
- Protein Sequence
- MDLEVKVKIEKDDSRKDPTSFLPEEAMSYEIKKKKKKKKKKQEDPFKDIDDKMNVKIEPITLLDPEVKIKVEDIEVELDFNDFGDSGLMHEGPHDADEEPVVKIEPQNHDAVLLTFESVISEKPPMANSTEMFPFSNNDLPTEQAPNHVCKVCHLVFQSHKTMRMHQKRKHKSFRKSFKHICDHCGMSYEMKNSLVAHMKRKHGPDSKPDDREERTCEICALVFKGMPRLRMHMRRKHGSFQDSFKHVCEDCGLTYEKYRSLIVHIQRKHSNNQKPEINRWYNCPFCPKIFTKRETYARHVQRKHHVSDENIKQENDNENDLVNCKNEQTGEITCKECPLVFSSMNFLKLHMRRKHNALRDNFRLKCRICNLSYDKIESLKRHVRRKHDKGSHCEVCNKQFDTREMYLNHSHVKAIKECNICGLIFASQGGLAKHMRCTHKIDSPKTVFCNLCNEGFHDKRQLKPHFMKVHLKVSYTCRYCKKVFKAKESYRRHILFKHPNGNHFNVQRQKCEQCNETFKDEFDLCRHINMIHGRSEDMKKEDREILEIKREDHDQDVKDCFQCTKCPDTYLTWEQLKLHYEATHHNIEETQCQICGEILPGNELQKHIKSRHTDTEMQCKYCEFKTNIRVSLTQHMLRHKNAETIHCEYTGCKYKTFYEGAMEKHKRKHADLGVKLQCTQCPFQSMNKYILKYHEEAHETGKKRYMCDQCDYATILPANLVQHKYKHSTEKRFKCEVCPFATKYNTSLRFHVRKKHCDLPTFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00327297;
- 90% Identity
- iTF_00974040;
- 80% Identity
- -