Basic Information

Insect: Mythimna pallens
Gene Symbol: -
Assembly: GCA_961205895.1
Location: OY540851.1:10437984-10474891[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.073 7.4 8.2 7.1 1 23 45 68 45 68 0.97

2 15 0.0013 0.13 13.7 7.9 1 23 74 96 74 96 0.98

3 15 5.3e-06 0.00054 21.2 0.8 1 23 102 124 102 124 0.98

4 15 8.6e-05 0.0087 17.4 3.4 1 23 130 152 130 152 0.99

5 15 6.2e-05 0.0063 17.8 0.9 1 23 159 182 159 182 0.92

6 15 0.00015 0.015 16.6 0.6 1 23 190 213 190 213 0.95

7 15 5.3e-05 0.0054 18.1 0.4 2 23 220 240 219 240 0.98

8 15 0.00012 0.013 16.9 0.6 1 23 246 270 246 270 0.92

9 15 7.5e-05 0.0076 17.6 1.7 1 21 276 296 276 297 0.95

10 15 0.00029 0.03 15.7 0.6 2 23 303 325 303 325 0.96

11 15 0.28 28 6.3 0.8 1 23 334 357 334 357 0.94

12 15 0.055 5.6 8.6 3.8 2 23 364 385 363 386 0.95

13 15 2.5 2.5e+02 3.4 9.7 1 23 682 704 682 704 0.91

14 15 2.2 2.2e+02 3.5 0.7 2 23 715 735 714 735 0.82

15 15 0.026 2.6 9.6 0.9 1 23 862 884 862 884 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.073	7.4	8.2	7.1	1	23	45	68	45	68	0.97
2	15	0.0013	0.13	13.7	7.9	1	23	74	96	74	96	0.98
3	15	5.3e-06	0.00054	21.2	0.8	1	23	102	124	102	124	0.98
4	15	8.6e-05	0.0087	17.4	3.4	1	23	130	152	130	152	0.99
5	15	6.2e-05	0.0063	17.8	0.9	1	23	159	182	159	182	0.92
6	15	0.00015	0.015	16.6	0.6	1	23	190	213	190	213	0.95
7	15	5.3e-05	0.0054	18.1	0.4	2	23	220	240	219	240	0.98
8	15	0.00012	0.013	16.9	0.6	1	23	246	270	246	270	0.92
9	15	7.5e-05	0.0076	17.6	1.7	1	21	276	296	276	297	0.95
10	15	0.00029	0.03	15.7	0.6	2	23	303	325	303	325	0.96
11	15	0.28	28	6.3	0.8	1	23	334	357	334	357	0.94
12	15	0.055	5.6	8.6	3.8	2	23	364	385	363	386	0.95
13	15	2.5	2.5e+02	3.4	9.7	1	23	682	704	682	704	0.91
14	15	2.2	2.2e+02	3.5	0.7	2	23	715	735	714	735	0.82
15	15	0.026	2.6	9.6	0.9	1	23	862	884	862	884	0.98

Sequence Information

Coding Sequence: ATGAATATTCTCCCAGTCAAGACAAATATGCATGTTTACCCAAATGCCAAACTTAAATCCAACCCTATGAAGCAATTTGACAACTCCTCAAACTGGGGTAGCCACGTGAAACTTCACTCCACTGAGGAGCCATACCACTGTGACCTCTGCGACTATAAGTGTAAGGTCAAGAAGTATTTAAGTCGTCATGTGAAGAAGACACACACGAAACCTACTGGACATCAGTGTCCTGTCTGCGGGAAATGCTTCCACTTCGACTGTGGACTGCGGAATCATATGAGAGTGCATACACGTGAAAAACCATACAAATGCGAATATTGTGACAAGGCGTTTAGCTCATCATACACTTTGTCAGGACACAGATTGATACACACTGGAGAGAAACCCTATCAATGCCAATACTGCGACTACGCCTGTCGGGACAGTTCCACGATCAGAAAGCACATGGAGAGGCATATGGGAATCAGCAAGAATTACACTTGTTCTATATGCAATAagaacttcAAAAAGAAGCAGACGCTACAGATACACGTCGACGAGGTCCATTTCGACCTGGACACGAGAAAGTATCCATGTGAGCAGTGTGACAAGGTTTTCAAGACTAAAGGGACGCTTACTTTTCATGTGAGCACGGTCCACAAGAAGTCCAATCGCGTAAAATGCGAGATTTGCGGGCGCGTCACAACTAAGAACAACTTGTTGGCACACATGAGACGTCATGTAGACgtgaaaccttacaaatgtagTTACAAGCCATGCGGGAAGAGATTCGGCGATAAGGGCGACTTGAAACGGCACCTCAACATCCACTTCCCAGACAACCAGCACATGTGTCCCGTCTGCAACAGACGGTTCTCCCGCAGGTTCCGCCTCGCCAAGCACATGAGGAACGGGTGTCGTCGAGCTCAGTGCAACGATTGTGGACAGCTgtTCTCCACCAAATTCTTCCTAGCCCAGCATATCAAGAACGCTCACGGCCCCTACCCTAAGTTGAGGGAGTATCTCTGCGATATCTGTGACATTGTGACATACAACAGGCGATGTATCATACAACATCTCAAGTATGGACATGGCACTATTAATGACACAAAATGCCAAATATGCAAAAAGGATTATTTCAAATATGAAACTTTGAAGGAACATTATTTGAGTCATCACAATCTCAAATATAGTTTATTGGACCAGAAaaaagacGAAATAGTTGTAGTAAAAGAAGAACCTGTGGAGGTGGACGAAGAGATGGGTGACCCTCCAGACTTCATGTATGAAGTTGAAATACAGAAACAGGAAATAGTTAACGATCCTCCACCAGAACCGGTCCTGGAGCCGACCAGCCCTGAACACTTCACGATCGACACAGACACCATCACGTACTCCAAGAAGGTGCTATCTGAAGACATCTCTCACTGCCTCATAGAGCGAGAGAGCACGACAGATGTGTTCGACGATTTCTTTATAGGGCATGTGCTGCAGAAGACCGAGTCTGTTGTTACACCTAAACACATAGTAGACGAGAAAAAGAAGGAGTGCGTAGAGAAACGTCTAGAAGAACTGCTAACCAAAGTGAGGGTACGCAACCAGTGGGCCGTGTTGGAGAAACTCAGGAAACAGTACAACAGGCGGATCAAAATGGCGACCGGTGGTGGAGATAAGAAAGagcaaaaacaaaacattagatATTTCAAAAACCCAAAAAGTAATACGACTGATCAATCGGCAAATGATACTAATGGAAATAAAACCCAtattgataatgatgatgataaaactgAAGACCAAGACAGAACAACCAATGATGATAATATAAACATGCAGAATAATGAttctgaaaatattaaaaataataatgataatagtcAAGATAGCAAAAATGGTGAAGCAAATAGTGAAATGGCTGGTCCTAATGGTGATAAAATAGGTGAAGAAAATGCTGAGGAAAATGATGATTCagaggaaaatgatgatgataaagatcCTGATTACAATTTTGAAAGCAACAGTGATGAAGAAACTAACCATAATGGAAAGTTAACATTTCATACACATCAGTGCTATATTTGTTTTAAgCTATTCAAAACGAAAACCGACTTAAAGCTCCACTGCAAGCACCATTTCGATTTATGCAACGAGAAAATGCTAAAAAAGTGTCCCTtctgtggttacgtcacaaataaaactatCACTAGACACATCAAGTTAGTTCACAACCTATCATACGACATACGAAAGAACGGTAGAATTAAAGAGAAGGAAACGGCATCCGGCTCGAAGTACGTGTTTCAAATTGACAAAGACTGCGATCTAGATATCATACCTAGCattagtaatttaaataaaatcgcgTCCATGAAAATCGATGAAAAGAAACGCGTATCAAATAATCTATTTTTAGGAACGACTAAGTTAGTTAAAAAGGGGGACGATTGGATGGTTCAGAAGCAAAAAGTTGATGTTAACAGCGAATTTTTGCTACCAGAGTTTACTAAGCAAGAATATCTGTCGTTGAAATGTATTGGTGAAAATTATTTAGAGAGAATTAGGAATTTGAGTATATTAGCCAAGAAAAAGGGTTTGAAAATATTGTATCCTTGCGAAGGGTGCGATAAAATATGTCTTACTATGAGCGCCCTAAAGCTCCATAATAGAAAACATGAGACTAACCCCAAACAATATAAACCTAAAGTTTGGAAGAACAAAATCCTAAACGGCTTAAATGGTCGGTATAGCcaagtcaataaaataaataacaaaaagaaaaagaagtatgGTGATACCAGCCAAAAGACCAATATTCCAATAActgataaaaaaagtaataaaagaagCCATAGACTAGAAAGAGTTGGGAAGAAAGTAGATAGCGCTCCTGAAACCATAGCCAATCGTTTTGCGGATCCTAATCCTGTCAAAAATAACCATAAATGTGATAGAAAACTCATAGAGTTCTATCACAAGAACATTAAAGGTGGTGATATAGAATTCTGGCAGTTTTTAAAGATCTTCAATAAAATGAGTCGTGAAAAAATCAATGATTTTCAAGACTTGGAAAGTCGGTACGATTTTGGTATgcataatatcaaaaataaggATAATTCTACCGcggaaaatacaaaagaatctACTGAAGAAGATGCTATGGAGAGAGTgcagaagaaaactaaaaaaatcaagAAGAGTAGGCAGAAAAAAGCGTTTACAAGAGCAATTATGATTAGTAAAAAGGAGCATTTGAGACGAATGGAGATTAAAAACCAAATGAGAGAGAAATTAAAGGGATCGTAA
Protein Sequence: MNILPVKTNMHVYPNAKLKSNPMKQFDNSSNWGSHVKLHSTEEPYHCDLCDYKCKVKKYLSRHVKKTHTKPTGHQCPVCGKCFHFDCGLRNHMRVHTREKPYKCEYCDKAFSSSYTLSGHRLIHTGEKPYQCQYCDYACRDSSTIRKHMERHMGISKNYTCSICNKNFKKKQTLQIHVDEVHFDLDTRKYPCEQCDKVFKTKGTLTFHVSTVHKKSNRVKCEICGRVTTKNNLLAHMRRHVDVKPYKCSYKPCGKRFGDKGDLKRHLNIHFPDNQHMCPVCNRRFSRRFRLAKHMRNGCRRAQCNDCGQLFSTKFFLAQHIKNAHGPYPKLREYLCDICDIVTYNRRCIIQHLKYGHGTINDTKCQICKKDYFKYETLKEHYLSHHNLKYSLLDQKKDEIVVVKEEPVEVDEEMGDPPDFMYEVEIQKQEIVNDPPPEPVLEPTSPEHFTIDTDTITYSKKVLSEDISHCLIERESTTDVFDDFFIGHVLQKTESVVTPKHIVDEKKKECVEKRLEELLTKVRVRNQWAVLEKLRKQYNRRIKMATGGGDKKEQKQNIRYFKNPKSNTTDQSANDTNGNKTHIDNDDDKTEDQDRTTNDDNINMQNNDSENIKNNNDNSQDSKNGEANSEMAGPNGDKIGEENAEENDDSEENDDDKDPDYNFESNSDEETNHNGKLTFHTHQCYICFKLFKTKTDLKLHCKHHFDLCNEKMLKKCPFCGYVTNKTITRHIKLVHNLSYDIRKNGRIKEKETASGSKYVFQIDKDCDLDIIPSISNLNKIASMKIDEKKRVSNNLFLGTTKLVKKGDDWMVQKQKVDVNSEFLLPEFTKQEYLSLKCIGENYLERIRNLSILAKKKGLKILYPCEGCDKICLTMSALKLHNRKHETNPKQYKPKVWKNKILNGLNGRYSQVNKINNKKKKKYGDTSQKTNIPITDKKSNKRSHRLERVGKKVDSAPETIANRFADPNPVKNNHKCDRKLIEFYHKNIKGGDIEFWQFLKIFNKMSREKINDFQDLESRYDFGMHNIKNKDNSTAENTKESTEEDAMERVQKKTKKIKKSRQKKAFTRAIMISKKEHLRRMEIKNQMREKLKGS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01026708;
90% Identity: iTF_01026708;
80% Identity: -