Basic Information

Insect: Mythimna pallens
Gene Symbol: -
Assembly: GCA_961205895.1
Location: OY540836.1:11310614-11321870[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00042 0.043 15.2 0.2 2 23 144 165 143 165 0.93

2 10 0.00061 0.062 14.7 2.4 1 23 171 193 171 193 0.96

3 10 7e-05 0.0071 17.7 0.3 1 23 285 307 285 307 0.98

4 10 0.00063 0.065 14.7 0.0 3 23 386 407 384 407 0.90

5 10 0.0002 0.02 16.2 0.1 1 23 422 444 422 444 0.97

6 10 1.5e-05 0.0015 19.8 0.2 1 23 476 498 476 498 0.98

7 10 0.00065 0.066 14.6 0.2 1 23 504 526 504 526 0.97

8 10 0.00037 0.037 15.4 0.3 1 23 532 554 532 555 0.95

9 10 0.0098 1 10.9 1.1 1 23 568 590 568 590 0.96

10 10 0.03 3.1 9.4 0.0 1 20 739 758 739 761 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00042	0.043	15.2	0.2	2	23	144	165	143	165	0.93
2	10	0.00061	0.062	14.7	2.4	1	23	171	193	171	193	0.96
3	10	7e-05	0.0071	17.7	0.3	1	23	285	307	285	307	0.98
4	10	0.00063	0.065	14.7	0.0	3	23	386	407	384	407	0.90
5	10	0.0002	0.02	16.2	0.1	1	23	422	444	422	444	0.97
6	10	1.5e-05	0.0015	19.8	0.2	1	23	476	498	476	498	0.98
7	10	0.00065	0.066	14.6	0.2	1	23	504	526	504	526	0.97
8	10	0.00037	0.037	15.4	0.3	1	23	532	554	532	555	0.95
9	10	0.0098	1	10.9	1.1	1	23	568	590	568	590	0.96
10	10	0.03	3.1	9.4	0.0	1	20	739	758	739	761	0.93

Sequence Information

Coding Sequence: ATGGATGGGGAAGCCGAAGACTTCAACCTCCAATGGGAGGAAGAAGTTGAAGTGAAGCACAGTCCTGGTGGCGTAGTTGAAACTGAAGAAGAGATGTCAGGTCTAGAAAATGTGCAGCATACAGGATATGCCAACATGACTGCCGAAGAGATGATGAACACGGACCAAATGGCTGCAGAGAACTTAATGTTTCTATCTCAAGACGTGAACTACACTGAGACAGCCGAACTTGCCGATGACCCTAGTGTGGAATGTGTTACGGAAGAGGTCATTACGGACGATTGGGTGATTCCTGGTGGGCAGGAAAGGTACCAagtCGAAGTTCCTATGGATCATTTGAATAACGCCGATATAGTTCCGAAAGAAGAAAACGACCTTGATGTTCCTTTACCGACAGATCAAGATGAATACACAGCGATGCGTCCTTGGCCGTGCGACTTTTGTTCACGGCGGTTTCGTAAAAAGGCCGCTCTCATGAATCACATGGTGGCCCATCAGAACGACCGGCCGCACGCGTGTAACTTGTGCGGCGTGCGATACGTGCGGAAATGCGACCTCATGAACCATCTCAAGGTTCACGCTTTTGTGCCTGACAACACTGATTCTATAGACTATGagGAAGTTTTAGACAATAATCAAATTGTAAAACCAAAGAAGAAACGAGGTCGACGGAAAAAGAATCCTGAACCTGTGGAGGAGAACGGTCTGTGGGAGAACATGACGTCGGCGCGCACGCAGCAGTGGTCGCGGCGCGCGCGCTCGCCGGCGCCGCCCCCCGCGTCGCCCCCCtccccgccgcccgcgccgcccgcgccgtcGCCCCCGCCGCCGCCCAGTGACCCCTCGCGCCCCTTCGTCTGCCGGCACTGCGGCGTCGGCTTCGCGAGGGAGAAGGCGCTGCAGTCACATGCTAGGGTGCATGGAGGCGATTCTCCAGTGGAATGCGGTTCCTGCGGCGAGCTGTGCTGGTCGCGCGAGGCTCTGGCGTCGCACACCGCACAGCGGCACCCGCACCTGCCTCCGCGCGACCAGCCTCCCGATCCTCCCTACGAAGACTCCGACTCGGGTGACGACATGGAGTTCCGCCTTTCTCCGCTGTCGCACGGAGCTAGCGAACGCGCTGTGTACGACACGATGCGTGGACCCGAGCTATTCTGTCAGGACTGTGGCGTTGCCTTCCAGCGAGCTGACCTGCTTAGGAGACACGTTGCTGCAGCTCACAGTTACAAGCGGCACGACAGTTCAAGCAGCACATGGGCGGAGCACACGTGCGACGTATGCGGCGAGGGCTTCACGGACGCGCTGCAGTTGCTGGCGCACGCCGAGACGCACGCCGAGAGACACCGCACGCCGCACTCGCAGCCCAGGTTAAAAAGAATGGCTCGAGGTCGAAACAATACATCATCAGTGAATAACTTACGACAGTTCCCTTGTAGGGTTTGTGGCAAGGTGTTTGGTTCGCGCAGCTCGCAACAGATCCACATCCGCATCCATACGGGTGAGCGGCCCTACGCGTGCCGGTTCTGCTGGAAGGCGTTCGCGGACGGTGGCACTCTGCGGAAGCATGAGAGGATACACACAGGTGAAAAGCCGTACGCTTGTGCAGTGTGTCCGCGTGCGTTCAATCAGCGCGTCGTGCTGCGTGAACACGTACGCTCGCATCATTCTGCTCCAGACAGGCGCGCCAACGGTGGACCGGCTTACTGTTGTGTAGTATGTGGCCGTACGCTGCACTCGAGCGCGGAACTGGTGCAACACCTCATACAGCATTGCGACGCCAACACGGCGCTCAAGAGACAACCACAGACGGGGCCACGGAAGTACAAGAGACGACGAAAACTGAAGACAGAGTCCCCGGCGACGCCACGCGAGTGGGAGCGTCCCTCCCCCTCCCCGCCGGCCGTCTCGCGGTCCATCTCCCCCGCGTCCGACACGCCGCAGCCCTCGCCCCCCTCCCCCGCGTCGCCCACGTCGGGCGCGcgccggcgccggcgccgcGGCCCCTCGCCCGCGCCGCGGCCGCGCATGATCCACACGGAGGAGCGCGCGCGCGGCAAGCCCAGCCCGCGCCGGCGCCGCGCTCCCGGGCGCGCCGCGTCGCCCGCGTCGCCGGCGCGCGCGCGGCCCGCCCGCCGCCGTCCGCCGCGCCGCCCGGCCGACGACCTGCGCGCTATCCGGACGTCCGCGTCGCCACCGCCGGACGCGGCCGGCCCCTACAAGTGCGAGATGTGCGCGCTGGAGTTCCCGCGGCGCGACGCGCTGCTGCTGCACGTGCCGGTGCACATCTGA
Protein Sequence: MDGEAEDFNLQWEEEVEVKHSPGGVVETEEEMSGLENVQHTGYANMTAEEMMNTDQMAAENLMFLSQDVNYTETAELADDPSVECVTEEVITDDWVIPGGQERYQVEVPMDHLNNADIVPKEENDLDVPLPTDQDEYTAMRPWPCDFCSRRFRKKAALMNHMVAHQNDRPHACNLCGVRYVRKCDLMNHLKVHAFVPDNTDSIDYEEVLDNNQIVKPKKKRGRRKKNPEPVEENGLWENMTSARTQQWSRRARSPAPPPASPPSPPPAPPAPSPPPPPSDPSRPFVCRHCGVGFAREKALQSHARVHGGDSPVECGSCGELCWSREALASHTAQRHPHLPPRDQPPDPPYEDSDSGDDMEFRLSPLSHGASERAVYDTMRGPELFCQDCGVAFQRADLLRRHVAAAHSYKRHDSSSSTWAEHTCDVCGEGFTDALQLLAHAETHAERHRTPHSQPRLKRMARGRNNTSSVNNLRQFPCRVCGKVFGSRSSQQIHIRIHTGERPYACRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHVRSHHSAPDRRANGGPAYCCVVCGRTLHSSAELVQHLIQHCDANTALKRQPQTGPRKYKRRRKLKTESPATPREWERPSPSPPAVSRSISPASDTPQPSPPSPASPTSGARRRRRRGPSPAPRPRMIHTEERARGKPSPRRRRAPGRAASPASPARARPARRRPPRRPADDLRAIRTSASPPPDAAGPYKCEMCALEFPRRDALLLHVPVHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01064911;
90% Identity: iTF_00888537;
80% Identity: -